Wall clock time and date at job start Mon Mar 30 2020 01:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99905 * 2 1 4 4 H 1.48506 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47335 * 299.99753 * 3 2 1 6 6 H 1.48500 * 109.47557 * 59.99726 * 3 2 1 7 7 C 1.37873 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99777 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00259 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47366 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47324 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47161 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99469 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00377 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99443 * 179.97438 * 13 12 11 16 16 H 1.08998 * 109.47500 * 59.99620 * 15 13 12 17 17 C 1.52999 * 109.47004 * 299.99612 * 15 13 12 18 18 O 1.42903 * 109.47256 * 65.00527 * 17 15 13 19 19 C 1.50697 * 109.47177 * 179.97438 * 15 13 12 20 20 C 1.38241 * 119.99635 * 59.72762 * 19 15 13 21 21 C 1.38237 * 119.99863 * 179.79198 * 20 19 15 22 22 C 1.38235 * 119.99603 * 0.43297 * 21 20 19 23 23 C 1.38228 * 120.00200 * 359.81918 * 22 21 20 24 24 C 1.38228 * 120.00359 * 359.97438 * 23 22 21 25 25 H 0.96997 * 120.00044 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47033 * 60.00469 * 9 7 2 27 27 H 1.08999 * 109.47152 * 300.00305 * 9 7 2 28 28 H 1.09001 * 109.46943 * 60.00555 * 10 9 7 29 29 H 1.08999 * 109.47294 * 300.00292 * 10 9 7 30 30 H 1.08998 * 109.47134 * 59.99825 * 11 10 9 31 31 H 1.08999 * 109.46983 * 300.00249 * 11 10 9 32 32 H 0.96990 * 119.99728 * 359.97438 * 12 11 10 33 33 H 1.08997 * 109.47286 * 305.00087 * 17 15 13 34 34 H 1.09008 * 109.47201 * 184.99867 * 17 15 13 35 35 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 36 36 H 1.08000 * 120.00025 * 359.97438 * 20 19 15 37 37 H 1.07997 * 120.00353 * 180.27590 * 21 20 19 38 38 H 1.08003 * 119.99532 * 179.83654 * 22 21 20 39 39 H 1.08001 * 119.99834 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.00340 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9831 -7.3713 -0.0004 14 8 0.7907 -7.5929 -0.0013 15 6 2.9624 -8.5167 -0.0004 16 1 3.5886 -8.4594 0.8900 17 6 3.8427 -8.4350 -1.2491 18 8 4.6437 -7.2530 -1.1908 19 6 2.2090 -9.8218 -0.0009 20 6 1.3411 -10.1184 -1.0352 21 6 0.6531 -11.3174 -1.0379 22 6 0.8264 -12.2159 -0.0018 23 6 1.6903 -11.9171 1.0351 24 6 2.3814 -10.7200 1.0357 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8898 27 1 0.6240 -2.5567 0.8902 28 1 2.8719 -3.6043 0.8906 29 1 2.8720 -3.6043 -0.8894 30 1 0.8540 -5.0445 -0.8903 31 1 0.8534 -5.0450 0.8896 32 1 3.3860 -5.9233 0.0008 33 1 3.2116 -8.4029 -2.1371 34 1 4.4903 -9.3107 -1.2950 35 1 5.2279 -7.1357 -1.9523 36 1 1.2027 -9.4146 -1.8426 37 1 -0.0215 -11.5511 -1.8482 38 1 0.2869 -13.1516 -0.0026 39 1 1.8253 -12.6189 1.8448 40 1 3.0568 -10.4866 1.8456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597150871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:25 Heat of formation + Delta-G solvation = -106.958391 kcal Electronic energy + Delta-G solvation = -20713.260942 eV Core-core repulsion = 17491.004536 eV Total energy + Delta-G solvation = -3222.256406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39134 -39.64386 -37.76955 -36.95632 -35.14907 -34.22098 -32.93149 -31.78382 -29.83610 -28.38531 -25.54502 -24.61001 -23.47106 -22.63352 -22.28385 -20.77982 -18.73397 -18.46376 -18.04378 -17.45342 -16.97591 -16.73908 -16.43236 -16.11440 -15.74807 -15.40938 -15.27891 -14.76808 -14.33585 -14.25072 -13.97374 -13.81759 -13.65994 -13.47776 -13.39870 -12.78188 -12.56326 -12.39841 -12.34497 -12.01053 -11.83338 -11.68717 -11.60445 -11.26590 -11.14289 -10.63972 -10.57006 -10.03862 -9.77539 -9.67371 -8.20178 -6.31886 0.39505 0.53471 1.41376 1.41792 1.55282 1.61089 2.23415 2.42595 2.86137 3.13467 3.21994 3.63744 3.86842 4.03378 4.12927 4.18396 4.19568 4.22776 4.25856 4.31517 4.54221 4.57033 4.61928 4.68065 4.83339 4.92475 4.98982 5.09320 5.15327 5.16688 5.46758 5.53837 5.57430 5.63528 5.66846 5.68998 5.83014 6.11914 6.21651 6.64374 6.85369 6.86772 7.31859 7.37837 8.92337 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035310 B = 0.002928 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.793307 B = 9561.593371 C = 9999.946307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.099 4.099 11 C 0.129 3.871 12 N -0.705 5.705 13 C 0.509 3.491 14 O -0.583 6.583 15 C -0.062 4.062 16 H 0.126 0.874 17 C 0.097 3.903 18 O -0.585 6.585 19 C -0.083 4.083 20 C -0.104 4.104 21 C -0.135 4.135 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.117 4.117 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.009 1.009 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.418 0.582 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.406 0.594 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.804 -25.241 -1.799 27.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.137 4.137 11 C 0.005 3.995 12 N -0.359 5.359 13 C 0.296 3.704 14 O -0.464 6.464 15 C -0.083 4.083 16 H 0.144 0.856 17 C 0.018 3.982 18 O -0.395 6.395 19 C -0.084 4.084 20 C -0.122 4.122 21 C -0.153 4.153 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.135 4.135 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.257 0.743 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.258 0.742 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.535 -25.189 -1.254 26.962 hybrid contribution 0.293 1.250 -0.581 1.409 sum 9.828 -23.939 -1.835 25.943 Atomic orbital electron populations 1.70122 1.07988 1.27767 1.51760 1.26047 0.95770 1.03638 0.94739 0.85337 0.79185 0.78469 0.77665 1.18161 1.20470 1.20540 1.21702 0.93745 0.91958 1.50378 0.91547 1.18945 0.94395 0.93023 0.94975 1.21568 0.98359 0.91811 1.01965 1.21220 0.92067 0.85947 1.00315 1.46094 1.11460 1.04758 1.73548 1.21009 0.89366 0.84665 0.75362 1.90692 1.18750 1.85355 1.51553 1.20302 0.95276 0.89783 1.02915 0.85581 1.21976 0.92797 0.88913 0.94468 1.86266 1.58764 1.43786 1.50679 1.19259 0.98669 0.94110 0.96346 1.21020 0.96099 0.96678 0.98385 1.21381 0.99883 0.94070 0.99938 1.21504 0.98396 1.00150 0.93947 1.21446 0.96658 0.97149 0.99293 1.21309 1.00396 0.94175 0.97608 0.92787 0.99004 0.99064 0.91655 0.91455 0.93490 0.93564 0.74271 0.93513 0.89702 0.74200 0.87571 0.84804 0.83753 0.83457 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.97 13.29 21.45 0.28 -57.68 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.74 9.11 25.60 0.23 -30.50 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.10 -4.05 5.27 30.59 0.16 -3.89 16 11 C 0.13 4.92 5.67 86.38 0.49 5.41 16 12 N -0.71 -21.86 5.29 -463.05 -2.45 -24.31 16 13 C 0.51 15.90 7.02 87.66 0.62 16.51 16 14 O -0.58 -23.19 15.09 -3.02 -0.05 -23.24 16 15 C -0.06 -1.33 2.67 -12.29 -0.03 -1.36 16 16 H 0.13 2.28 7.88 -2.39 -0.02 2.26 16 17 C 0.10 1.54 6.16 71.98 0.44 1.99 16 18 O -0.58 -8.87 11.43 -148.98 -1.70 -10.57 16 19 C -0.08 -1.86 4.40 -19.87 -0.09 -1.95 16 20 C -0.10 -2.47 7.97 22.27 0.18 -2.29 16 21 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 22 C -0.12 -2.07 10.05 22.27 0.22 -1.84 16 23 C -0.13 -2.09 10.05 22.26 0.22 -1.87 16 24 C -0.12 -2.18 9.67 22.27 0.22 -1.97 16 25 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 32 H 0.42 11.09 6.54 -92.72 -0.61 10.48 16 33 H 0.05 0.81 7.59 -2.39 -0.02 0.79 16 34 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.41 2.67 9.12 -74.06 -0.68 2.00 16 36 H 0.11 2.70 7.58 -2.91 -0.02 2.68 16 37 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 38 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.14 1.98 7.95 -2.91 -0.02 1.95 16 Total: -1.00 -75.10 338.33 1.37 -73.73 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.24 Total: 18.36 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 3.50 Total: -22.61 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -2.17 Total: -81.99 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.75 Total: -33.81 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -75.10 1.37 -73.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597150871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.230 kcal (2) G-P(sol) polarization free energy of solvation -75.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds