Wall clock time and date at job start Mon Mar 30 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 8 8 C 1.50703 * 120.00222 * 359.97438 * 7 2 1 9 9 O 1.42891 * 109.47161 * 179.97438 * 8 7 2 10 10 C 1.42901 * 113.99778 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.47190 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99823 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00155 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99890 * 0.02562 * 13 11 10 15 15 C 1.46500 * 119.99935 * 179.97438 * 13 11 10 16 16 C 1.50700 * 109.46877 * 90.00136 * 15 13 11 17 17 H 1.07994 * 120.00007 * 0.02562 * 16 15 13 18 18 C 1.37878 * 119.99616 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99805 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00149 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47377 * 90.00295 * 20 18 16 22 22 H 1.48506 * 109.47177 * 209.99957 * 20 18 16 23 23 H 1.48497 * 109.47381 * 330.00171 * 20 18 16 24 24 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 27 27 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 29 29 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 30 30 H 1.07999 * 120.00245 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47234 * 300.00356 * 8 7 2 32 32 H 1.09003 * 109.46847 * 59.99501 * 8 7 2 33 33 H 1.08999 * 109.47335 * 299.99917 * 10 9 8 34 34 H 1.08994 * 109.47491 * 60.00641 * 10 9 8 35 35 H 1.09003 * 109.47005 * 89.99614 * 14 13 11 36 36 H 1.09006 * 109.46547 * 209.99769 * 14 13 11 37 37 H 1.08994 * 109.47078 * 329.99464 * 14 13 11 38 38 H 1.08995 * 109.47296 * 210.00628 * 15 13 11 39 39 H 1.09004 * 109.46994 * 330.00058 * 15 13 11 40 40 H 0.96998 * 119.99861 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1970 -0.0058 8 6 1.4446 -2.5021 -0.0115 9 8 2.3732 -3.5881 -0.0175 10 6 1.7586 -4.8782 -0.0227 11 6 2.8253 -5.9429 -0.0281 12 8 3.9965 -5.6278 -0.0271 13 7 2.4777 -7.2450 -0.0330 14 6 1.0630 -7.6256 -0.0337 15 6 3.5147 -8.2799 -0.0388 16 6 3.8722 -8.6406 1.3800 17 1 3.3764 -8.1486 2.2036 18 6 4.8325 -9.5988 1.6265 19 7 5.1442 -9.9140 2.8647 20 14 5.6906 -10.4493 0.2019 21 1 6.9066 -9.6833 -0.1721 22 1 6.0773 -11.8248 0.6069 23 1 4.7704 -10.5162 -0.9617 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6583 2.1326 0.0004 28 1 4.1205 2.1326 0.0089 29 1 5.3517 0.0000 0.0002 30 1 4.1206 -2.1323 -0.0101 31 1 0.8182 -2.5639 0.8784 32 1 0.8175 -2.5556 -0.9015 33 1 1.1394 -4.9894 0.8675 34 1 1.1375 -4.9813 -0.9125 35 1 0.7115 -7.7158 -1.0615 36 1 0.9438 -8.5814 0.4765 37 1 0.4813 -6.8626 0.4836 38 1 3.1425 -9.1643 -0.5559 39 1 4.3998 -7.9044 -0.5524 40 1 5.8194 -10.5884 3.0381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598616886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:44 Heat of formation + Delta-G solvation = -52.696072 kcal Electronic energy + Delta-G solvation = -20798.490074 eV Core-core repulsion = 17578.586659 eV Total energy + Delta-G solvation = -3219.903415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.77593 -39.10134 -37.22254 -34.89205 -33.17714 -32.56572 -31.70840 -29.32390 -27.67142 -26.91765 -25.94092 -25.48154 -22.30968 -21.83446 -20.90196 -18.67573 -17.05072 -16.99078 -16.68461 -16.23148 -15.99295 -15.33321 -14.94987 -14.71438 -14.54050 -14.10616 -13.83101 -13.56063 -13.15320 -12.84177 -12.74918 -12.51009 -12.36176 -12.19797 -12.08250 -11.88655 -11.84407 -11.48234 -11.02142 -10.92645 -10.86679 -10.52418 -10.15785 -9.81274 -9.54167 -8.98112 -8.80372 -8.63709 -8.58614 -7.73919 -6.08406 -4.07476 1.24644 1.37005 3.17820 3.29562 3.31590 3.36334 3.38441 3.69088 4.16036 4.40057 4.68339 4.71366 4.87585 5.00872 5.05702 5.10686 5.16933 5.21640 5.25893 5.27458 5.34666 5.43521 5.48729 5.57682 5.58196 5.74380 5.79968 5.96127 6.07800 6.11070 6.38689 6.50136 6.55668 6.65966 6.91566 6.97389 7.11987 7.32839 7.60496 8.18991 8.46701 8.91876 8.97121 9.51479 11.05006 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028261 B = 0.003377 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.513443 B = 8290.130713 C = 8871.802065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.127 4.127 6 C -0.087 4.087 7 C -0.089 4.089 8 C 0.102 3.898 9 O -0.358 6.358 10 C 0.048 3.952 11 C 0.507 3.493 12 O -0.519 6.519 13 N -0.598 5.598 14 C 0.081 3.919 15 C 0.217 3.783 16 C -0.530 4.530 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.032 0.968 39 H 0.037 0.963 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.306 18.192 -7.772 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.145 4.145 6 C -0.105 4.105 7 C -0.089 4.089 8 C 0.025 3.975 9 O -0.276 6.276 10 C -0.032 4.032 11 C 0.293 3.707 12 O -0.394 6.394 13 N -0.332 5.332 14 C -0.063 4.063 15 C 0.097 3.903 16 C -0.569 4.569 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.704 3.296 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.191 1.191 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.352 18.251 -7.664 22.819 hybrid contribution 0.158 -0.593 -0.481 0.779 sum -11.194 17.658 -8.145 22.438 Atomic orbital electron populations 1.20827 0.91325 1.02801 1.02431 1.19598 0.95848 0.92348 1.00730 1.20903 0.94271 0.97024 1.02161 1.21144 0.94304 0.98036 1.00317 1.21222 1.00135 0.92425 1.00692 1.21224 0.93742 0.99064 0.96479 1.19519 0.94357 0.92935 1.02102 1.21241 0.91076 0.84654 1.00495 1.87991 1.31777 1.12436 1.95395 1.22316 0.95266 0.83840 1.01820 1.19919 0.89581 0.83090 0.78148 1.90695 1.19212 1.81239 1.48287 1.47777 1.07422 1.05634 1.72380 1.21699 0.81875 1.02140 1.00544 1.19680 0.86899 0.85297 0.98443 1.21332 1.22414 1.21862 0.91284 0.90745 1.24864 0.96107 0.96429 0.95636 1.69898 1.32373 1.32461 1.18826 0.86836 0.80819 0.79043 0.82899 1.19846 1.21057 1.19053 0.91007 0.91477 0.91500 0.86191 0.86270 0.85971 0.84201 0.91870 0.91961 0.90569 0.90866 0.93480 0.90281 0.92302 0.95036 0.94468 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.60 36.01 0.35 -0.54 16 2 C -0.09 -0.91 5.88 -104.62 -0.62 -1.52 16 3 C -0.13 -1.26 9.70 -39.58 -0.38 -1.64 16 4 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 5 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 6 C -0.09 -1.23 9.38 -39.58 -0.37 -1.60 16 7 C -0.09 -1.14 5.88 -104.62 -0.62 -1.76 16 8 C 0.10 1.22 5.05 36.01 0.18 1.41 16 9 O -0.36 -5.82 8.36 -55.14 -0.46 -6.28 16 10 C 0.05 0.71 4.97 36.01 0.18 0.89 16 11 C 0.51 10.66 7.75 -10.98 -0.09 10.57 16 12 O -0.52 -13.48 16.08 -14.36 -0.23 -13.71 16 13 N -0.60 -12.34 2.86 -182.95 -0.52 -12.87 16 14 C 0.08 1.19 10.24 59.85 0.61 1.80 16 15 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 16 C -0.53 -15.39 9.94 -34.44 -0.34 -15.74 16 17 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 20 Si 0.88 21.69 27.47 -169.99 -4.67 17.03 16 21 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 26 H 0.07 0.46 6.64 -51.93 -0.34 0.11 16 27 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.14 2.27 7.01 -52.49 -0.37 1.91 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.62 7.49 -51.93 -0.39 0.23 16 33 H 0.08 0.98 7.40 -51.93 -0.38 0.60 16 34 H 0.07 0.86 8.11 -51.93 -0.42 0.43 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 37 H 0.06 0.69 6.44 -51.93 -0.33 0.35 16 38 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 39 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -35.94 335.84 -7.99 -43.93 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.93 Total: -1.69 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.01 Total: -4.36 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.25 Total: -39.97 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.69 Total: -20.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.94 -7.99 -43.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598616886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.769 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds