Wall clock time and date at job start Mon Mar 30 2020 02:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 8 8 C 1.50703 * 120.00222 * 359.97438 * 7 2 1 9 9 O 1.42891 * 109.47161 * 179.97438 * 8 7 2 10 10 C 1.42901 * 113.99778 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.47190 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99823 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00155 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99890 * 0.02562 * 13 11 10 15 15 C 1.46500 * 119.99935 * 179.97438 * 13 11 10 16 16 C 1.50700 * 109.46877 * 90.00136 * 15 13 11 17 17 H 1.07994 * 120.00007 * 0.02562 * 16 15 13 18 18 C 1.37878 * 119.99616 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99805 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00149 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47377 * 90.00295 * 20 18 16 22 22 H 1.48506 * 109.47177 * 209.99957 * 20 18 16 23 23 H 1.48497 * 109.47381 * 330.00171 * 20 18 16 24 24 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 27 27 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 29 29 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 30 30 H 1.07999 * 120.00245 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47234 * 300.00356 * 8 7 2 32 32 H 1.09003 * 109.46847 * 59.99501 * 8 7 2 33 33 H 1.08999 * 109.47335 * 299.99917 * 10 9 8 34 34 H 1.08994 * 109.47491 * 60.00641 * 10 9 8 35 35 H 1.09003 * 109.47005 * 89.99614 * 14 13 11 36 36 H 1.09006 * 109.46547 * 209.99769 * 14 13 11 37 37 H 1.08994 * 109.47078 * 329.99464 * 14 13 11 38 38 H 1.08995 * 109.47296 * 210.00628 * 15 13 11 39 39 H 1.09004 * 109.46994 * 330.00058 * 15 13 11 40 40 H 0.96998 * 119.99861 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1970 -0.0058 8 6 1.4446 -2.5021 -0.0115 9 8 2.3732 -3.5881 -0.0175 10 6 1.7586 -4.8782 -0.0227 11 6 2.8253 -5.9429 -0.0281 12 8 3.9965 -5.6278 -0.0271 13 7 2.4777 -7.2450 -0.0330 14 6 1.0630 -7.6256 -0.0337 15 6 3.5147 -8.2799 -0.0388 16 6 3.8722 -8.6406 1.3800 17 1 3.3764 -8.1486 2.2036 18 6 4.8325 -9.5988 1.6265 19 7 5.1442 -9.9140 2.8647 20 14 5.6906 -10.4493 0.2019 21 1 6.9066 -9.6833 -0.1721 22 1 6.0773 -11.8248 0.6069 23 1 4.7704 -10.5162 -0.9617 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6583 2.1326 0.0004 28 1 4.1205 2.1326 0.0089 29 1 5.3517 0.0000 0.0002 30 1 4.1206 -2.1323 -0.0101 31 1 0.8182 -2.5639 0.8784 32 1 0.8175 -2.5556 -0.9015 33 1 1.1394 -4.9894 0.8675 34 1 1.1375 -4.9813 -0.9125 35 1 0.7115 -7.7158 -1.0615 36 1 0.9438 -8.5814 0.4765 37 1 0.4813 -6.8626 0.4836 38 1 3.1425 -9.1643 -0.5559 39 1 4.3998 -7.9044 -0.5524 40 1 5.8194 -10.5884 3.0381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598616886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:43 Heat of formation + Delta-G solvation = -76.195962 kcal Electronic energy + Delta-G solvation = -20799.509106 eV Core-core repulsion = 17578.586659 eV Total energy + Delta-G solvation = -3220.922447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89973 -40.39769 -38.39406 -36.62191 -34.73159 -33.96396 -32.63214 -31.07639 -28.89953 -27.82075 -27.24317 -26.61460 -24.18252 -22.77261 -21.74828 -20.23454 -19.17371 -18.30087 -17.80611 -17.39125 -17.14604 -16.87940 -16.26287 -15.85890 -15.78058 -15.42581 -15.00560 -14.66324 -14.49997 -14.08344 -13.90729 -13.87967 -13.67050 -13.31044 -13.24454 -13.07923 -12.94375 -12.77733 -12.72371 -12.44689 -12.03919 -11.88276 -11.76236 -11.69548 -10.86038 -10.84943 -10.64995 -9.68482 -9.46478 -9.43767 -8.35743 -6.41277 0.40094 0.48359 1.31515 1.36692 1.44657 1.70271 1.93784 2.30008 2.82689 2.92650 2.98949 3.64225 3.90096 3.98973 4.09389 4.11394 4.22504 4.23985 4.34583 4.43336 4.47821 4.52077 4.66554 4.68065 4.79568 4.88180 4.89887 4.93077 4.97829 4.98577 5.15552 5.32999 5.43858 5.51628 5.57570 5.63316 5.67672 6.08925 6.15933 6.24038 6.60091 6.65091 7.19194 7.37708 8.81374 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028261 B = 0.003377 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.513443 B = 8290.130713 C = 8871.802065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.122 4.122 5 C -0.143 4.143 6 C -0.121 4.121 7 C -0.108 4.108 8 C 0.100 3.900 9 O -0.396 6.396 10 C 0.060 3.940 11 C 0.492 3.508 12 O -0.587 6.587 13 N -0.605 5.605 14 C 0.073 3.927 15 C 0.224 3.776 16 C -0.539 4.539 17 H 0.028 0.972 18 C 0.009 3.991 19 N -0.946 5.946 20 Si 0.950 3.050 21 H -0.279 1.279 22 H -0.273 1.273 23 H -0.235 1.235 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.016 0.984 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 19.360 -9.731 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.161 4.161 6 C -0.139 4.139 7 C -0.108 4.108 8 C 0.024 3.976 9 O -0.315 6.315 10 C -0.019 4.019 11 C 0.280 3.720 12 O -0.467 6.467 13 N -0.338 5.338 14 C -0.069 4.069 15 C 0.101 3.899 16 C -0.578 4.578 17 H 0.046 0.954 18 C -0.189 4.189 19 N -0.586 5.586 20 Si 0.772 3.228 21 H -0.205 1.205 22 H -0.198 1.198 23 H -0.158 1.158 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.169 0.831 28 H 0.163 0.837 29 H 0.144 0.856 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.382 19.417 -9.632 26.012 hybrid contribution 1.024 -0.852 0.216 1.350 sum -13.358 18.565 -9.416 24.734 Atomic orbital electron populations 1.20907 0.88725 1.04193 1.03428 1.19980 0.97717 0.91553 0.99363 1.21356 0.94217 0.98187 1.00568 1.21468 0.95010 0.98147 0.99313 1.21367 1.00612 0.92732 1.01373 1.21093 0.94959 0.98316 0.99535 1.19774 0.93850 0.94472 1.02717 1.21489 0.90582 0.82932 1.02573 1.87978 1.34161 1.13598 1.95803 1.22297 0.92903 0.81661 1.05074 1.21130 0.90230 0.84221 0.76427 1.90655 1.22383 1.82369 1.51307 1.47906 1.09146 1.05053 1.71679 1.22077 0.78643 1.02753 1.03419 1.19358 0.87963 0.87224 0.95331 1.21581 1.22290 1.21457 0.92455 0.95384 1.25891 0.96855 0.97335 0.98786 1.70052 1.33440 1.33585 1.21502 0.85688 0.79480 0.77757 0.79848 1.20467 1.19802 1.15767 0.90031 0.89693 0.90594 0.83076 0.83685 0.85650 0.87943 0.90000 0.89216 0.87873 0.86356 0.89631 0.91294 0.88896 0.92543 0.96624 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.60 71.24 0.68 -0.64 16 2 C -0.09 -1.64 5.88 -19.86 -0.12 -1.76 16 3 C -0.13 -2.19 9.70 22.27 0.22 -1.97 16 4 C -0.12 -2.38 10.05 22.27 0.22 -2.15 16 5 C -0.14 -3.60 10.05 22.27 0.22 -3.37 16 6 C -0.12 -3.64 9.38 22.27 0.21 -3.43 16 7 C -0.11 -2.71 5.88 -19.87 -0.12 -2.83 16 8 C 0.10 2.22 5.05 71.24 0.36 2.58 16 9 O -0.40 -12.86 8.36 -129.94 -1.09 -13.95 16 10 C 0.06 1.67 4.97 71.24 0.35 2.03 16 11 C 0.49 20.81 7.75 87.66 0.68 21.49 16 12 O -0.59 -32.13 16.08 15.99 0.26 -31.88 16 13 N -0.61 -24.60 2.86 -851.13 -2.43 -27.03 16 14 C 0.07 1.92 10.24 127.77 1.31 3.22 16 15 C 0.22 11.07 4.23 85.63 0.36 11.43 16 16 C -0.54 -32.42 9.94 25.60 0.25 -32.16 16 17 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 18 C 0.01 0.56 5.47 84.65 0.46 1.02 16 19 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 20 Si 0.95 45.14 27.47 68.60 1.88 47.03 16 21 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.23 -9.89 6.54 99.48 0.65 -9.24 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 26 H 0.08 0.73 6.64 -2.39 -0.02 0.72 16 27 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 28 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.10 3.77 7.01 -2.91 -0.02 3.75 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.47 7.49 -2.39 -0.02 1.45 16 33 H 0.10 2.32 7.40 -2.39 -0.02 2.31 16 34 H 0.12 2.25 8.11 -2.39 -0.02 2.23 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.97 8.07 -2.38 -0.02 1.95 16 37 H 0.09 1.81 6.44 -2.39 -0.02 1.79 16 38 H 0.06 2.51 7.13 -2.39 -0.02 2.49 16 39 H 0.02 0.84 6.85 -2.39 -0.02 0.83 16 40 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -85.94 335.84 4.99 -80.95 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.96 Total: 11.95 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 5.10 Total: -6.55 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -2.13 Total: -87.56 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -0.83 Total: -45.82 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.03 kcal Total: -85.94 4.99 -80.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598616886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.751 kcal (2) G-P(sol) polarization free energy of solvation -85.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds