Wall clock time and date at job start Mon Mar 30 2020 02:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 8 8 C 1.50703 * 120.00222 * 359.97438 * 7 2 1 9 9 O 1.42891 * 109.47161 * 179.97438 * 8 7 2 10 10 C 1.42901 * 113.99778 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.47190 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99823 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00155 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99935 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47094 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99999 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00014 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99862 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00191 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47479 * 59.99725 * 20 18 16 22 22 H 1.48498 * 109.47501 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47219 * 299.99629 * 20 18 16 24 24 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 27 27 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 29 29 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 30 30 H 1.07999 * 120.00245 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47234 * 300.00356 * 8 7 2 32 32 H 1.09003 * 109.46847 * 59.99501 * 8 7 2 33 33 H 1.08999 * 109.47335 * 299.99917 * 10 9 8 34 34 H 1.08994 * 109.47491 * 60.00641 * 10 9 8 35 35 H 0.96995 * 119.99953 * 0.02562 * 13 11 10 36 36 H 1.09005 * 109.47091 * 300.00525 * 14 13 11 37 37 H 1.09000 * 109.47005 * 59.99767 * 14 13 11 38 38 H 1.08999 * 109.47236 * 299.99661 * 15 14 13 39 39 H 1.09001 * 109.46827 * 60.00372 * 15 14 13 40 40 H 0.97009 * 120.00069 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1970 -0.0058 8 6 1.4446 -2.5021 -0.0115 9 8 2.3732 -3.5881 -0.0175 10 6 1.7586 -4.8782 -0.0227 11 6 2.8253 -5.9429 -0.0281 12 8 3.9965 -5.6278 -0.0271 13 7 2.4777 -7.2450 -0.0330 14 6 3.5147 -8.2799 -0.0388 15 6 2.8567 -9.6611 -0.0443 16 6 3.9234 -10.7256 -0.0496 17 1 4.9663 -10.4451 -0.0496 18 6 3.5679 -12.0578 -0.0556 19 7 2.2979 -12.3994 -0.0561 20 14 4.8900 -13.3773 -0.0615 21 1 5.7350 -13.2370 1.1516 22 1 4.2514 -14.7180 -0.0681 23 1 5.7349 -13.2261 -1.2734 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6583 2.1326 0.0004 28 1 4.1205 2.1326 0.0089 29 1 5.3517 0.0000 0.0002 30 1 4.1206 -2.1323 -0.0101 31 1 0.8182 -2.5639 0.8784 32 1 0.8175 -2.5556 -0.9015 33 1 1.1394 -4.9894 0.8675 34 1 1.1375 -4.9813 -0.9125 35 1 1.5411 -7.4970 -0.0335 36 1 4.1336 -8.1691 -0.9293 37 1 4.1361 -8.1765 0.8507 38 1 2.2376 -9.7722 0.8460 39 1 2.2356 -9.7641 -0.9341 40 1 2.0477 -13.3367 -0.0600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598693700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:46 Heat of formation + Delta-G solvation = -74.889783 kcal Electronic energy + Delta-G solvation = -20006.144829 eV Core-core repulsion = 16785.279023 eV Total energy + Delta-G solvation = -3220.865806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.90562 -39.25205 -37.39953 -34.83844 -33.28490 -32.87224 -31.85768 -30.07274 -28.09671 -27.10934 -25.89979 -24.41709 -22.05295 -21.13332 -20.98123 -20.20876 -17.30228 -16.92442 -16.47061 -16.42736 -16.20617 -15.21468 -15.08833 -14.89048 -14.53105 -14.47787 -14.03987 -13.88663 -13.27716 -13.23833 -12.96232 -12.60477 -12.42190 -12.30461 -12.07147 -12.02467 -11.23164 -11.14222 -11.02617 -11.00063 -10.67118 -10.34241 -10.00644 -9.79909 -9.47010 -9.19825 -8.91947 -8.75163 -8.56855 -8.37587 -6.10746 -4.13658 1.13406 1.25555 2.94576 2.98415 3.30803 3.34548 3.38209 3.57665 4.04512 4.41103 4.58224 4.61343 4.77710 4.91723 4.94214 5.00926 5.07959 5.12651 5.13995 5.21483 5.26326 5.32725 5.38014 5.49053 5.62883 5.85242 5.96325 6.26381 6.30300 6.32919 6.39237 6.43604 6.71491 6.84151 6.86017 6.97119 7.49664 7.59351 7.87298 7.96503 8.26117 8.61730 8.92040 9.51227 11.00779 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047604 B = 0.002370 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.039482 B =11813.440381 C =12365.126190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.119 4.119 5 C -0.127 4.127 6 C -0.089 4.089 7 C -0.090 4.090 8 C 0.102 3.898 9 O -0.359 6.359 10 C 0.044 3.956 11 C 0.506 3.494 12 O -0.530 6.530 13 N -0.721 5.721 14 C 0.123 3.877 15 C 0.013 3.987 16 C -0.523 4.523 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.139 0.861 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.398 0.602 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.442 25.242 0.138 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.137 4.137 5 C -0.145 4.145 6 C -0.106 4.106 7 C -0.090 4.090 8 C 0.025 3.975 9 O -0.277 6.277 10 C -0.036 4.036 11 C 0.290 3.710 12 O -0.407 6.407 13 N -0.373 5.373 14 C 0.001 3.999 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.157 0.843 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.494 25.329 0.137 25.918 hybrid contribution -0.115 -0.962 -0.003 0.969 sum -5.609 24.367 0.134 25.004 Atomic orbital electron populations 1.20837 0.91254 1.02919 1.02459 1.19610 0.95898 0.92338 1.00582 1.20923 0.94281 0.97083 1.01974 1.21155 0.94310 0.98072 1.00169 1.21217 1.00118 0.92437 1.00735 1.21188 0.93705 0.98974 0.96773 1.19501 0.94332 0.92905 1.02259 1.21261 0.91012 0.84485 1.00692 1.87976 1.31857 1.12361 1.95469 1.22266 0.95011 0.83836 1.02497 1.20131 0.89806 0.83525 0.77570 1.90701 1.19276 1.81959 1.48734 1.46224 1.11403 1.05371 1.74322 1.21744 0.89713 0.87491 1.00920 1.19324 0.96692 0.88570 0.97869 1.21014 0.92950 0.90670 1.51492 0.92267 1.24996 0.95534 0.98809 0.94956 1.69944 1.15601 1.17496 1.50293 0.86559 0.81632 0.80455 0.78809 1.20088 1.21247 1.20095 0.90981 0.91396 0.91456 0.86120 0.86217 0.85978 0.84335 0.91776 0.91760 0.90312 0.90315 0.76868 0.92471 0.92459 0.95900 0.95900 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.60 36.01 0.35 -0.43 16 2 C -0.08 -0.79 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 4 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 5 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 6 C -0.09 -1.09 9.38 -39.58 -0.37 -1.46 16 7 C -0.09 -1.01 5.88 -104.62 -0.62 -1.62 16 8 C 0.10 1.04 5.05 36.01 0.18 1.22 16 9 O -0.36 -4.92 8.36 -55.14 -0.46 -5.38 16 10 C 0.04 0.53 6.42 36.01 0.23 0.76 16 11 C 0.51 8.63 7.91 -10.98 -0.09 8.55 16 12 O -0.53 -11.46 16.50 -14.36 -0.24 -11.70 16 13 N -0.72 -12.29 5.56 -60.29 -0.33 -12.62 16 14 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 15 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 16 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 20 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 26 H 0.07 0.40 6.64 -51.93 -0.34 0.05 16 27 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.14 1.95 7.01 -52.49 -0.37 1.58 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.54 7.49 -51.93 -0.39 0.16 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.40 5.61 8.47 -40.82 -0.35 5.27 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -33.28 342.78 -8.89 -42.18 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.06 Total: 0.83 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.68 Total: -9.55 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.40 Total: -37.86 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.70 Total: -17.08 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.28 -8.89 -42.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598693700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.713 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds