Wall clock time and date at job start Mon Mar 30 2020 02:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 8 8 C 1.50703 * 120.00222 * 359.97438 * 7 2 1 9 9 O 1.42891 * 109.47161 * 179.97438 * 8 7 2 10 10 C 1.42901 * 113.99778 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.47190 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99823 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00155 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99935 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47094 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99999 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00014 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99862 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00191 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47479 * 59.99725 * 20 18 16 22 22 H 1.48498 * 109.47501 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47219 * 299.99629 * 20 18 16 24 24 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 27 27 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 29 29 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 30 30 H 1.07999 * 120.00245 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47234 * 300.00356 * 8 7 2 32 32 H 1.09003 * 109.46847 * 59.99501 * 8 7 2 33 33 H 1.08999 * 109.47335 * 299.99917 * 10 9 8 34 34 H 1.08994 * 109.47491 * 60.00641 * 10 9 8 35 35 H 0.96995 * 119.99953 * 0.02562 * 13 11 10 36 36 H 1.09005 * 109.47091 * 300.00525 * 14 13 11 37 37 H 1.09000 * 109.47005 * 59.99767 * 14 13 11 38 38 H 1.08999 * 109.47236 * 299.99661 * 15 14 13 39 39 H 1.09001 * 109.46827 * 60.00372 * 15 14 13 40 40 H 0.97009 * 120.00069 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1970 -0.0058 8 6 1.4446 -2.5021 -0.0115 9 8 2.3732 -3.5881 -0.0175 10 6 1.7586 -4.8782 -0.0227 11 6 2.8253 -5.9429 -0.0281 12 8 3.9965 -5.6278 -0.0271 13 7 2.4777 -7.2450 -0.0330 14 6 3.5147 -8.2799 -0.0388 15 6 2.8567 -9.6611 -0.0443 16 6 3.9234 -10.7256 -0.0496 17 1 4.9663 -10.4451 -0.0496 18 6 3.5679 -12.0578 -0.0556 19 7 2.2979 -12.3994 -0.0561 20 14 4.8900 -13.3773 -0.0615 21 1 5.7350 -13.2370 1.1516 22 1 4.2514 -14.7180 -0.0681 23 1 5.7349 -13.2261 -1.2734 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6583 2.1326 0.0004 28 1 4.1205 2.1326 0.0089 29 1 5.3517 0.0000 0.0002 30 1 4.1206 -2.1323 -0.0101 31 1 0.8182 -2.5639 0.8784 32 1 0.8175 -2.5556 -0.9015 33 1 1.1394 -4.9894 0.8675 34 1 1.1375 -4.9813 -0.9125 35 1 1.5411 -7.4970 -0.0335 36 1 4.1336 -8.1691 -0.9293 37 1 4.1361 -8.1765 0.8507 38 1 2.2376 -9.7722 0.8460 39 1 2.2356 -9.7641 -0.9341 40 1 2.0477 -13.3367 -0.0600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598693700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:45 Heat of formation + Delta-G solvation = -95.393586 kcal Electronic energy + Delta-G solvation = -20007.033941 eV Core-core repulsion = 16785.279023 eV Total energy + Delta-G solvation = -3221.754918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87805 -40.39000 -38.39909 -36.56251 -34.83429 -33.96276 -32.66333 -31.79591 -29.23875 -27.87301 -26.82082 -26.14387 -23.00701 -22.73338 -21.88209 -21.50106 -18.67686 -18.24629 -17.83762 -17.42578 -17.22186 -16.50888 -16.43261 -16.21270 -15.84389 -15.46535 -15.08822 -15.02298 -14.44064 -14.31042 -14.14475 -13.91293 -13.34981 -13.23524 -13.09494 -12.93440 -12.91140 -12.76154 -12.55012 -12.23404 -11.88266 -11.71787 -11.65975 -11.47617 -10.87258 -10.80859 -10.60407 -10.04805 -9.67922 -9.46096 -8.24622 -6.34871 0.40590 0.48981 1.41615 1.43693 1.51626 1.59970 1.85965 2.40840 2.83264 2.99489 3.10081 3.74081 3.91240 3.99261 4.10048 4.20796 4.23894 4.27456 4.35824 4.46335 4.48924 4.49696 4.52674 4.68804 4.84367 4.87438 4.89727 4.98284 5.16192 5.26547 5.32791 5.47285 5.53412 5.58091 5.63396 5.67724 5.77971 6.08695 6.15744 6.16219 6.63040 6.77929 7.26796 7.34244 8.86829 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047604 B = 0.002370 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.039482 B =11813.440381 C =12365.126190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.087 4.087 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.142 4.142 6 C -0.119 4.119 7 C -0.107 4.107 8 C 0.100 3.900 9 O -0.393 6.393 10 C 0.053 3.947 11 C 0.501 3.499 12 O -0.583 6.583 13 N -0.713 5.713 14 C 0.141 3.859 15 C 0.024 3.976 16 C -0.549 4.549 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.269 1.269 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.148 0.852 28 H 0.144 0.856 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.415 0.585 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 26.560 0.137 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.160 4.160 6 C -0.137 4.137 7 C -0.108 4.108 8 C 0.025 3.975 9 O -0.312 6.312 10 C -0.027 4.027 11 C 0.289 3.711 12 O -0.463 6.463 13 N -0.366 5.366 14 C 0.018 3.982 15 C -0.014 4.014 16 C -0.588 4.588 17 H 0.075 0.925 18 C -0.191 4.191 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.194 1.194 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.251 0.749 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.110 26.658 0.136 27.591 hybrid contribution 0.353 -1.296 -0.002 1.343 sum -6.757 25.363 0.135 26.248 Atomic orbital electron populations 1.20906 0.88945 1.04072 1.03423 1.19968 0.97598 0.91711 0.99469 1.21341 0.94312 0.98148 1.00673 1.21465 0.94925 0.98290 0.99338 1.21379 1.00674 0.92687 1.01257 1.21101 0.94766 0.98407 0.99401 1.19757 0.93953 0.94331 1.02717 1.21472 0.90561 0.82920 1.02569 1.87954 1.33938 1.13439 1.95855 1.22287 0.92923 0.81722 1.05719 1.21092 0.90357 0.84027 0.75670 1.90681 1.21935 1.82688 1.50986 1.45992 1.11411 1.04983 1.74195 1.21220 0.90157 0.87167 0.99702 1.19129 0.95827 0.89836 0.96585 1.21444 0.93622 0.91988 1.51731 0.92491 1.25850 0.97780 1.01066 0.94409 1.70041 1.17348 1.18169 1.50863 0.85516 0.78913 0.77649 0.79080 1.19424 1.20481 1.19435 0.89954 0.89938 0.90691 0.83383 0.83848 0.85455 0.87387 0.89725 0.89676 0.86865 0.86856 0.74887 0.93747 0.93737 0.97026 0.97023 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.60 71.24 0.68 -0.46 16 2 C -0.09 -1.46 5.88 -19.86 -0.12 -1.58 16 3 C -0.13 -1.96 9.70 22.27 0.22 -1.74 16 4 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 5 C -0.14 -3.08 10.05 22.27 0.22 -2.86 16 6 C -0.12 -3.08 9.38 22.27 0.21 -2.87 16 7 C -0.11 -2.33 5.88 -19.87 -0.12 -2.45 16 8 C 0.10 1.86 5.05 71.24 0.36 2.22 16 9 O -0.39 -10.53 8.36 -129.94 -1.09 -11.62 16 10 C 0.05 1.16 6.42 71.24 0.46 1.62 16 11 C 0.50 17.00 7.91 87.66 0.69 17.69 16 12 O -0.58 -26.02 16.50 15.99 0.26 -25.75 16 13 N -0.71 -24.05 5.56 -463.05 -2.57 -26.62 16 14 C 0.14 6.11 5.61 86.38 0.48 6.59 16 15 C 0.02 1.18 5.09 29.85 0.15 1.34 16 16 C -0.55 -30.76 9.11 25.60 0.23 -30.53 16 17 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 18 C 0.01 0.44 5.46 84.65 0.46 0.91 16 19 N -0.92 -53.84 13.29 21.45 0.28 -53.56 16 20 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 26 H 0.07 0.62 6.64 -2.39 -0.02 0.61 16 27 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 28 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 29 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 30 H 0.11 3.38 7.01 -2.91 -0.02 3.36 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.19 7.49 -2.39 -0.02 1.18 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.41 11.19 8.47 -92.71 -0.79 10.40 16 36 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -74.10 342.78 3.32 -70.78 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.24 Total: 15.08 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.16 Total: -13.99 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.29 Total: -80.18 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.82 Total: -37.37 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -74.10 3.32 -70.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598693700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.615 kcal (2) G-P(sol) polarization free energy of solvation -74.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds