Wall clock time and date at job start Mon Mar 30 2020 02:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37834 * 120.04531 * 2 1 4 4 C 1.38497 * 120.30259 * 180.25353 * 3 2 1 5 5 C 1.38102 * 120.39013 * 359.74683 * 4 3 2 6 6 C 1.38662 * 120.08242 * 359.97438 * 5 4 3 7 7 O 1.35661 * 120.14821 * 180.02562 * 6 5 4 8 8 C 1.39664 * 120.05170 * 179.73937 * 2 1 3 9 9 C 1.47536 * 120.18792 * 0.03007 * 8 2 1 10 10 O 1.21593 * 119.99806 * 269.71757 * 9 8 2 11 11 N 1.34776 * 120.00679 * 89.72119 * 9 8 2 12 12 C 1.46498 * 120.00303 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47200 * 269.99520 * 12 11 9 14 14 H 1.08006 * 119.99554 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99775 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47024 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47057 * 119.99677 * 17 15 13 20 20 H 1.48494 * 109.46827 * 239.99579 * 17 15 13 21 21 C 1.46506 * 119.99384 * 359.97438 * 11 9 8 22 22 C 1.53002 * 109.47035 * 120.00492 * 21 11 9 23 23 C 1.53005 * 109.46831 * 240.00089 * 21 11 9 24 24 H 1.09002 * 109.47210 * 270.25344 * 1 2 3 25 25 H 1.08992 * 109.47538 * 30.25837 * 1 2 3 26 26 H 1.09004 * 109.46843 * 150.25744 * 1 2 3 27 27 H 1.08000 * 119.84668 * 359.97438 * 3 2 1 28 28 H 1.08007 * 119.80600 * 179.71648 * 4 3 2 29 29 H 1.08004 * 119.95828 * 180.02562 * 5 4 3 30 30 H 0.96694 * 113.99838 * 269.97653 * 7 6 5 31 31 H 1.08995 * 109.46810 * 29.99980 * 12 11 9 32 32 H 1.09005 * 109.46841 * 149.99772 * 12 11 9 33 33 H 0.97004 * 119.99676 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.47212 * 0.02562 * 21 11 9 35 35 H 1.09004 * 109.47059 * 59.99372 * 22 21 11 36 36 H 1.08992 * 109.47060 * 179.97438 * 22 21 11 37 37 H 1.09004 * 109.46930 * 299.99770 * 22 21 11 38 38 H 1.09001 * 109.46812 * 60.00445 * 23 21 11 39 39 H 1.09002 * 109.46935 * 180.02562 * 23 21 11 40 40 H 1.08992 * 109.47061 * 300.00078 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1931 0.0000 4 6 3.5820 1.1994 -0.0053 5 6 4.2860 0.0112 -0.0054 6 6 3.6081 -1.1983 0.0004 7 8 4.2983 -2.3662 0.0009 8 6 2.2064 -1.2089 0.0055 9 6 1.4740 -2.4896 0.0107 10 8 1.1763 -3.0154 1.0658 11 7 1.1351 -3.0769 -1.1541 12 6 0.4084 -4.3490 -1.1489 13 6 1.3929 -5.4900 -1.1509 14 1 2.4538 -5.2877 -1.1551 15 6 0.9392 -6.7919 -1.1472 16 7 -0.3526 -7.0381 -1.1415 17 14 2.1596 -8.2062 -1.1490 18 1 3.5430 -7.6663 -1.1551 19 1 1.9571 -9.0363 0.0657 20 1 1.9489 -9.0402 -2.3593 21 6 1.4934 -2.4431 -2.4254 22 6 2.3915 -3.3853 -3.2297 23 6 0.2221 -2.1458 -3.2232 24 1 -0.3634 0.0045 1.0277 25 1 -0.3634 0.8876 -0.5178 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6553 2.1274 -0.0004 28 1 4.1146 2.1390 -0.0099 29 1 5.3660 0.0242 -0.0091 30 1 4.4947 -2.7073 -0.8823 31 1 -0.2144 -4.4079 -0.2563 32 1 -0.2216 -4.4111 -2.0363 33 1 -0.6718 -7.9541 -1.1386 34 1 2.0262 -1.5125 -2.2300 35 1 1.8590 -4.3161 -3.4250 36 1 2.6577 -2.9139 -4.1757 37 1 3.2972 -3.5971 -2.6613 38 1 -0.4177 -1.4746 -2.6502 39 1 0.4887 -1.6747 -4.1693 40 1 -0.3103 -3.0766 -3.4185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599234792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:47 Heat of formation + Delta-G solvation = -59.085713 kcal Electronic energy + Delta-G solvation = -22704.750356 eV Core-core repulsion = 19484.569865 eV Total energy + Delta-G solvation = -3220.180490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33984 -38.27412 -36.76236 -35.89689 -32.90427 -32.42696 -30.86561 -30.12639 -27.46005 -27.01809 -26.57497 -23.83160 -22.39591 -21.65424 -20.99654 -18.58615 -17.89812 -16.88706 -16.47074 -15.97374 -15.75080 -15.06363 -14.61810 -14.30972 -13.77177 -13.55585 -13.51915 -13.40508 -13.14372 -12.65318 -12.44127 -12.22144 -11.82440 -11.75167 -11.68272 -11.62573 -11.43670 -11.21769 -10.95174 -10.84178 -10.61493 -10.50433 -10.38553 -10.00736 -9.51835 -9.03902 -8.61528 -8.53110 -8.39988 -7.66129 -6.01975 -4.04816 1.18407 1.28011 3.30941 3.35432 3.39850 3.44317 3.54886 3.92674 4.25428 4.46725 4.83991 4.84875 4.97517 5.25995 5.26540 5.32806 5.35942 5.52486 5.55888 5.65713 5.71952 5.78342 5.84446 5.99095 6.09539 6.17565 6.24916 6.31548 6.33690 6.37637 6.52923 6.58314 6.79065 6.91960 7.11242 7.47083 7.56887 7.79550 7.95101 8.26591 8.41857 8.92510 9.09296 9.59277 11.06370 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.006170 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.685307 B = 4537.055961 C = 4861.020501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.041 4.041 3 C -0.135 4.135 4 C -0.096 4.096 5 C -0.156 4.156 6 C 0.140 3.860 7 O -0.487 6.487 8 C -0.134 4.134 9 C 0.558 3.442 10 O -0.529 6.529 11 N -0.585 5.585 12 C 0.245 3.755 13 C -0.516 4.516 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.133 3.867 22 C -0.156 4.156 23 C -0.161 4.161 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.391 0.609 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 16.763 -4.728 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.042 4.042 3 C -0.153 4.153 4 C -0.114 4.114 5 C -0.174 4.174 6 C 0.094 3.906 7 O -0.297 6.297 8 C -0.138 4.138 9 C 0.344 3.656 10 O -0.405 6.405 11 N -0.317 5.317 12 C 0.126 3.874 13 C -0.555 4.555 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 C 0.029 3.971 22 C -0.214 4.214 23 C -0.219 4.219 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.248 0.752 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.057 16.343 -3.575 17.477 hybrid contribution 0.798 -0.979 -0.482 1.352 sum 5.855 15.364 -4.056 16.935 Atomic orbital electron populations 1.20907 0.90596 1.03217 1.03133 1.19821 0.96262 0.91275 0.96866 1.20920 0.94178 0.97235 1.02940 1.21029 0.94040 0.97552 0.98772 1.21319 1.00432 0.91609 1.04066 1.18446 0.88302 0.85879 0.97943 1.84813 1.74899 1.36583 1.33450 1.20508 0.93725 0.94913 1.04653 1.17897 0.79596 0.83488 0.84638 1.90787 1.54465 1.64439 1.30841 1.48326 1.55854 1.23936 1.03554 1.19279 0.91945 0.77771 0.98361 1.21463 0.93340 0.90459 1.50268 0.92226 1.24920 0.95185 0.98758 0.95305 1.69940 1.12577 1.20159 1.50858 0.86493 0.81444 0.82294 0.77504 1.19784 1.20973 1.21104 1.20973 0.95656 0.95498 0.85019 1.22155 0.99772 1.01292 0.98200 1.22165 0.97977 1.02463 0.99336 0.90492 0.91095 0.90822 0.85562 0.85602 0.85236 0.75160 0.94088 0.94618 0.92873 0.91018 0.89821 0.93197 0.93067 0.92846 0.92272 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.62 36.00 0.35 -1.29 16 2 C -0.04 -0.60 5.83 -104.24 -0.61 -1.21 16 3 C -0.13 -1.56 9.68 -39.63 -0.38 -1.94 16 4 C -0.10 -1.04 10.03 -39.54 -0.40 -1.44 16 5 C -0.16 -1.97 9.98 -39.47 -0.39 -2.36 16 6 C 0.14 2.26 6.65 -38.70 -0.26 2.00 16 7 O -0.49 -8.28 12.95 -18.68 -0.24 -8.52 16 8 C -0.13 -2.37 3.56 -104.85 -0.37 -2.75 16 9 C 0.56 12.32 5.11 -12.47 -0.06 12.25 16 10 O -0.53 -14.36 16.68 5.28 0.09 -14.27 16 11 N -0.59 -12.29 2.38 -168.68 -0.40 -12.69 16 12 C 0.25 6.28 4.60 -5.19 -0.02 6.26 16 13 C -0.52 -14.26 7.83 -34.44 -0.27 -14.53 16 14 H 0.06 1.65 7.63 -52.48 -0.40 1.25 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.13 2.18 3.17 -67.92 -0.22 1.96 16 22 C -0.16 -2.49 8.47 37.16 0.31 -2.17 16 23 C -0.16 -2.35 9.17 37.16 0.34 -2.01 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.07 1.13 6.40 -51.93 -0.33 0.80 16 27 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 29 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.39 5.16 8.77 45.56 0.40 5.56 16 31 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 32 H 0.04 0.92 6.43 -51.93 -0.33 0.58 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.07 6.09 -51.93 -0.32 0.75 16 35 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 38 H 0.05 0.74 7.46 -51.93 -0.39 0.35 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.14 6.66 -51.93 -0.35 0.80 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -34.19 331.93 -6.88 -41.07 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.96 Total: 3.88 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.08 Total: -5.62 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.33 Total: -38.38 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.15 Total: -22.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.19 -6.88 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599234792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.016 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds