Wall clock time and date at job start Mon Mar 30 2020 02:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37834 * 120.04531 * 2 1 4 4 C 1.38497 * 120.30259 * 180.25353 * 3 2 1 5 5 C 1.38102 * 120.39013 * 359.74683 * 4 3 2 6 6 C 1.38662 * 120.08242 * 359.97438 * 5 4 3 7 7 O 1.35661 * 120.14821 * 180.02562 * 6 5 4 8 8 C 1.39664 * 120.05170 * 179.73937 * 2 1 3 9 9 C 1.47536 * 120.18792 * 0.03007 * 8 2 1 10 10 O 1.21593 * 119.99806 * 269.71757 * 9 8 2 11 11 N 1.34776 * 120.00679 * 89.72119 * 9 8 2 12 12 C 1.46498 * 120.00303 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47200 * 269.99520 * 12 11 9 14 14 H 1.08006 * 119.99554 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99775 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47024 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47057 * 119.99677 * 17 15 13 20 20 H 1.48494 * 109.46827 * 239.99579 * 17 15 13 21 21 C 1.46506 * 119.99384 * 359.97438 * 11 9 8 22 22 C 1.53002 * 109.47035 * 120.00492 * 21 11 9 23 23 C 1.53005 * 109.46831 * 240.00089 * 21 11 9 24 24 H 1.09002 * 109.47210 * 270.25344 * 1 2 3 25 25 H 1.08992 * 109.47538 * 30.25837 * 1 2 3 26 26 H 1.09004 * 109.46843 * 150.25744 * 1 2 3 27 27 H 1.08000 * 119.84668 * 359.97438 * 3 2 1 28 28 H 1.08007 * 119.80600 * 179.71648 * 4 3 2 29 29 H 1.08004 * 119.95828 * 180.02562 * 5 4 3 30 30 H 0.96694 * 113.99838 * 269.97653 * 7 6 5 31 31 H 1.08995 * 109.46810 * 29.99980 * 12 11 9 32 32 H 1.09005 * 109.46841 * 149.99772 * 12 11 9 33 33 H 0.97004 * 119.99676 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.47212 * 0.02562 * 21 11 9 35 35 H 1.09004 * 109.47059 * 59.99372 * 22 21 11 36 36 H 1.08992 * 109.47060 * 179.97438 * 22 21 11 37 37 H 1.09004 * 109.46930 * 299.99770 * 22 21 11 38 38 H 1.09001 * 109.46812 * 60.00445 * 23 21 11 39 39 H 1.09002 * 109.46935 * 180.02562 * 23 21 11 40 40 H 1.08992 * 109.47061 * 300.00078 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1931 0.0000 4 6 3.5820 1.1994 -0.0053 5 6 4.2860 0.0112 -0.0054 6 6 3.6081 -1.1983 0.0004 7 8 4.2983 -2.3662 0.0009 8 6 2.2064 -1.2089 0.0055 9 6 1.4740 -2.4896 0.0107 10 8 1.1763 -3.0154 1.0658 11 7 1.1351 -3.0769 -1.1541 12 6 0.4084 -4.3490 -1.1489 13 6 1.3929 -5.4900 -1.1509 14 1 2.4538 -5.2877 -1.1551 15 6 0.9392 -6.7919 -1.1472 16 7 -0.3526 -7.0381 -1.1415 17 14 2.1596 -8.2062 -1.1490 18 1 3.5430 -7.6663 -1.1551 19 1 1.9571 -9.0363 0.0657 20 1 1.9489 -9.0402 -2.3593 21 6 1.4934 -2.4431 -2.4254 22 6 2.3915 -3.3853 -3.2297 23 6 0.2221 -2.1458 -3.2232 24 1 -0.3634 0.0045 1.0277 25 1 -0.3634 0.8876 -0.5178 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6553 2.1274 -0.0004 28 1 4.1146 2.1390 -0.0099 29 1 5.3660 0.0242 -0.0091 30 1 4.4947 -2.7073 -0.8823 31 1 -0.2144 -4.4079 -0.2563 32 1 -0.2216 -4.4111 -2.0363 33 1 -0.6718 -7.9541 -1.1386 34 1 2.0262 -1.5125 -2.2300 35 1 1.8590 -4.3161 -3.4250 36 1 2.6577 -2.9139 -4.1757 37 1 3.2972 -3.5971 -2.6613 38 1 -0.4177 -1.4746 -2.6502 39 1 0.4887 -1.6747 -4.1693 40 1 -0.3103 -3.0766 -3.4185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599234792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:47 Heat of formation + Delta-G solvation = -83.167262 kcal Electronic energy + Delta-G solvation = -22705.794610 eV Core-core repulsion = 19484.569865 eV Total energy + Delta-G solvation = -3221.224745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67819 -39.72680 -37.91510 -37.57374 -34.95942 -33.54497 -32.48051 -31.40487 -29.25890 -28.23028 -27.79402 -25.53628 -23.97445 -22.83056 -22.30924 -20.03921 -19.15528 -18.60683 -18.31361 -17.25225 -17.17463 -16.63665 -16.12549 -15.68888 -15.38330 -14.95534 -14.78992 -14.55848 -14.38803 -14.23819 -13.88776 -13.64657 -13.38696 -13.25805 -12.91516 -12.82214 -12.79806 -12.71510 -12.55446 -12.49917 -12.24102 -12.11617 -11.71574 -11.69811 -11.53238 -10.71693 -10.62204 -9.74350 -9.56550 -9.48460 -8.20971 -6.32319 0.10853 0.27433 1.33935 1.37272 1.48189 1.71237 2.25402 2.41689 2.60111 3.09187 3.17070 3.57418 3.84905 3.94935 4.04091 4.23119 4.36063 4.36740 4.39249 4.60637 4.65334 4.69409 4.79982 4.83202 4.88618 4.96899 5.01116 5.06921 5.14140 5.21552 5.36376 5.40789 5.41366 5.51689 5.52779 5.62692 5.85402 5.88078 6.09250 6.67812 6.71867 6.77724 7.27361 7.43413 8.87064 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.006170 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.685307 B = 4537.055961 C = 4861.020501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.051 4.051 3 C -0.122 4.122 4 C -0.076 4.076 5 C -0.150 4.150 6 C 0.118 3.882 7 O -0.512 6.512 8 C -0.168 4.168 9 C 0.556 3.444 10 O -0.600 6.600 11 N -0.583 5.583 12 C 0.264 3.736 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.962 3.038 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.128 3.872 22 C -0.151 4.151 23 C -0.156 4.156 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.042 0.958 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.154 0.846 30 H 0.401 0.599 31 H -0.012 1.012 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.639 20.089 -6.254 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.094 4.094 5 C -0.168 4.168 6 C 0.073 3.927 7 O -0.324 6.324 8 C -0.171 4.171 9 C 0.345 3.655 10 O -0.482 6.482 11 N -0.312 5.312 12 C 0.143 3.857 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.212 1.212 20 H -0.193 1.193 21 C 0.026 3.974 22 C -0.209 4.209 23 C -0.214 4.214 24 H 0.086 0.914 25 H 0.129 0.871 26 H 0.061 0.939 27 H 0.184 0.816 28 H 0.190 0.810 29 H 0.172 0.828 30 H 0.260 0.740 31 H 0.006 0.994 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.312 19.702 -5.161 21.640 hybrid contribution 0.099 -1.887 -0.016 1.889 sum 7.411 17.815 -5.178 19.978 Atomic orbital electron populations 1.20926 0.90485 1.03585 1.02761 1.20024 0.96599 0.91346 0.97237 1.21350 0.94800 0.97182 1.00609 1.21585 0.93847 0.98556 0.95383 1.21603 1.01727 0.90626 1.02864 1.18760 0.87747 0.86763 0.99455 1.84777 1.75059 1.37826 1.34754 1.20272 0.94378 0.93294 1.09180 1.18687 0.78584 0.84728 0.83509 1.90722 1.57377 1.66867 1.33252 1.48307 1.54839 1.22453 1.05646 1.18707 0.91518 0.80088 0.95426 1.21661 0.93251 0.91374 1.49910 0.92690 1.25795 0.97004 1.01501 0.94891 1.70059 1.14412 1.20903 1.51725 0.85454 0.79222 0.78890 0.77787 1.19069 1.21250 1.19349 1.21328 0.96970 0.96155 0.82989 1.22103 0.98873 0.99911 1.00028 1.22133 0.96816 1.01536 1.00895 0.91373 0.87113 0.93903 0.81638 0.81008 0.82794 0.74034 0.99356 0.95131 0.92602 0.88524 0.93307 0.89002 0.93518 0.92478 0.88359 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.62 71.23 0.69 -2.46 16 2 C -0.05 -1.40 5.83 -19.62 -0.11 -1.51 16 3 C -0.12 -2.22 9.68 22.24 0.22 -2.00 16 4 C -0.08 -1.21 10.03 22.30 0.22 -0.99 16 5 C -0.15 -3.22 9.98 22.34 0.22 -3.00 16 6 C 0.12 3.69 6.65 22.84 0.15 3.84 16 7 O -0.51 -17.62 12.95 -89.77 -1.16 -18.78 16 8 C -0.17 -5.94 3.56 -20.01 -0.07 -6.01 16 9 C 0.56 26.03 5.11 86.70 0.44 26.47 16 10 O -0.60 -35.39 16.68 -4.01 -0.07 -35.46 16 11 N -0.58 -25.89 2.38 -805.85 -1.92 -27.81 16 12 C 0.26 14.56 4.60 85.63 0.39 14.96 16 13 C -0.52 -30.44 7.83 25.60 0.20 -30.24 16 14 H 0.05 3.17 7.63 -2.91 -0.02 3.15 16 15 C 0.01 0.38 5.46 84.65 0.46 0.84 16 16 N -0.93 -57.29 13.29 21.44 0.28 -57.01 16 17 Si 0.96 46.02 29.54 68.60 2.03 48.05 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 C 0.13 4.18 3.17 44.99 0.14 4.32 16 22 C -0.15 -4.74 8.47 71.98 0.61 -4.13 16 23 C -0.16 -4.44 9.17 71.98 0.66 -3.78 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.11 1.90 8.09 -2.39 -0.02 1.88 16 26 H 0.04 1.36 6.40 -2.38 -0.02 1.35 16 27 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 29 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.40 10.76 8.77 -74.06 -0.65 10.11 16 31 H -0.01 -0.76 7.42 -2.39 -0.02 -0.78 16 32 H 0.03 1.70 6.43 -2.38 -0.02 1.68 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.10 2.73 6.09 -2.39 -0.01 2.72 16 35 H 0.05 1.87 6.92 -2.39 -0.02 1.86 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 1.47 7.85 -2.38 -0.02 1.45 16 38 H 0.06 1.57 7.46 -2.39 -0.02 1.55 16 39 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 1.45 6.66 -2.39 -0.02 1.44 16 Total: -1.00 -82.20 331.93 3.78 -78.42 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.40 Total: 16.28 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 4.23 Total: -3.69 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -1.64 Total: -84.82 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -1.23 Total: -54.24 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -82.20 3.78 -78.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599234792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.751 kcal (2) G-P(sol) polarization free energy of solvation -82.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds