Wall clock time and date at job start Mon Mar 30 2020 01:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48498 * 109.47019 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47128 * 300.00338 * 3 2 1 6 6 H 1.48494 * 109.47116 * 60.00476 * 3 2 1 7 7 C 1.37873 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00129 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00186 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47319 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.47150 * 64.99949 * 12 11 10 14 14 C 1.47158 * 110.99971 * 189.06247 * 13 12 11 15 15 C 1.52885 * 108.49880 * 165.35977 * 14 13 12 16 16 C 1.50711 * 109.95485 * 50.40898 * 15 14 13 17 17 C 1.39169 * 118.48978 * 163.23484 * 16 15 14 18 18 O 1.35892 * 119.88480 * 359.58008 * 17 16 15 19 19 C 1.38536 * 120.22668 * 179.60036 * 17 16 15 20 20 C 1.38162 * 119.76604 * 0.02562 * 19 17 16 21 21 C 1.38048 * 119.93449 * 0.09258 * 20 19 17 22 22 C 1.37739 * 121.68967 * 343.00089 * 16 15 14 23 23 C 1.46625 * 110.99841 * 66.04958 * 13 12 11 24 24 H 0.96998 * 119.99585 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47017 * 60.00460 * 9 7 2 26 26 H 1.08999 * 109.47472 * 300.00137 * 9 7 2 27 27 H 1.09002 * 109.47259 * 300.00293 * 11 10 9 28 28 H 1.09001 * 109.47074 * 60.00315 * 11 10 9 29 29 H 1.09001 * 109.47630 * 185.00204 * 12 11 10 30 30 H 1.09004 * 109.47346 * 305.00335 * 12 11 10 31 31 H 1.09007 * 109.63297 * 285.04819 * 14 13 12 32 32 H 1.08994 * 109.63612 * 45.64649 * 14 13 12 33 33 H 1.08999 * 109.39821 * 290.26074 * 15 14 13 34 34 H 1.09000 * 109.30952 * 170.50252 * 15 14 13 35 35 H 0.96703 * 114.00368 * 89.99659 * 18 17 16 36 36 H 1.07997 * 120.11273 * 180.02562 * 19 17 16 37 37 H 1.08004 * 120.03548 * 180.11653 * 20 19 17 38 38 H 1.07993 * 119.74904 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.26378 * 296.18153 * 23 13 12 40 40 H 1.09003 * 109.26832 * 55.64447 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 7 3.4079 -5.8872 1.2559 14 6 4.5896 -6.7628 1.2057 15 6 5.5230 -6.3842 2.3558 16 6 4.7515 -6.3350 3.6495 17 6 5.4606 -6.3600 4.8468 18 8 6.8173 -6.4359 4.8287 19 6 4.7882 -6.3080 6.0569 20 6 3.4087 -6.2318 6.0723 21 6 2.7067 -6.2096 4.8839 22 6 3.3762 -6.2619 3.6695 23 6 2.5632 -6.2392 2.4016 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 0.9451 -4.9822 0.8903 28 1 0.9446 -4.9827 -0.8897 29 1 2.1819 -6.9376 -0.0885 30 1 3.3216 -5.7961 -0.8412 31 1 4.2800 -7.8024 1.3127 32 1 5.1057 -6.6273 0.2553 33 1 5.9619 -5.4061 2.1589 34 1 6.3164 -7.1274 2.4357 35 1 7.2593 -5.5760 4.8126 36 1 5.3403 -6.3271 6.9848 37 1 2.8802 -6.1892 7.0132 38 1 1.6285 -6.1503 4.8994 39 1 1.7649 -5.5035 2.4993 40 1 2.1258 -7.2239 2.2369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599646804.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:17 Heat of formation + Delta-G solvation = -62.892050 kcal Electronic energy + Delta-G solvation = -21311.195536 eV Core-core repulsion = 18090.849990 eV Total energy + Delta-G solvation = -3220.345546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40402 -38.15357 -36.72402 -36.02417 -33.06734 -32.43854 -31.26907 -29.29201 -28.25223 -26.75033 -24.89330 -23.29633 -22.26982 -22.07806 -21.21271 -19.57578 -18.13472 -16.43523 -16.34996 -16.18332 -15.71761 -15.43234 -15.26647 -14.59843 -14.36504 -14.28639 -13.87402 -13.60713 -13.24247 -13.11906 -12.63935 -12.37413 -12.18526 -11.92320 -11.73398 -11.65107 -11.35518 -11.11000 -11.00750 -10.76249 -10.72145 -10.34785 -10.24676 -9.93337 -9.03227 -8.76600 -8.67871 -8.54523 -8.13162 -8.05183 -6.06909 -4.07484 1.20554 1.30960 3.31693 3.38016 3.45087 3.54152 3.94923 4.18306 4.38842 4.66189 4.68267 4.86995 4.98561 5.06943 5.23186 5.29835 5.33848 5.37631 5.39988 5.49773 5.62543 5.68098 5.71179 5.79632 5.86339 5.97276 5.99020 6.09778 6.16652 6.28665 6.35581 6.40890 6.56360 6.76046 7.14216 7.17710 7.25201 7.48155 7.57950 7.85456 8.21509 8.66456 9.07632 9.57318 11.04908 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.004174 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.696324 B = 6705.821300 C = 7233.419724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.066 3.934 12 C 0.060 3.940 13 N -0.518 5.518 14 C 0.053 3.947 15 C -0.071 4.071 16 C -0.089 4.089 17 C 0.099 3.901 18 O -0.499 6.499 19 C -0.149 4.149 20 C -0.109 4.109 21 C -0.123 4.123 22 C -0.055 4.055 23 C 0.090 3.910 24 H 0.262 0.738 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.035 0.965 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.389 0.611 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.942 -15.843 8.460 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.013 4.013 12 C -0.067 4.067 13 N -0.242 5.242 14 C -0.075 4.075 15 C -0.108 4.108 16 C -0.090 4.090 17 C 0.055 3.945 18 O -0.309 6.309 19 C -0.168 4.168 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.055 4.055 23 C -0.037 4.037 24 H 0.072 0.928 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.244 0.756 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.114 0.886 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.057 -15.803 8.506 19.672 hybrid contribution -0.255 0.634 0.020 0.684 sum 7.802 -15.169 8.526 19.070 Atomic orbital electron populations 1.69977 1.06095 1.26915 1.51040 1.24941 0.94947 0.99379 0.95293 0.86308 0.80093 0.82715 0.77554 1.19472 1.20904 1.20896 1.21102 0.94116 0.89343 1.50125 0.91497 1.20179 0.88861 0.83952 0.95071 1.87953 1.34614 1.12293 1.95002 1.22254 0.93810 0.86349 0.98854 1.22203 0.96376 0.96199 0.91932 1.62167 1.07431 1.52229 1.02354 1.22152 0.92276 0.94002 0.99094 1.20413 0.97013 1.02867 0.90547 1.19877 0.93346 1.00902 0.94860 1.18363 0.82916 1.01453 0.91779 1.84761 1.15404 1.34304 1.96444 1.21298 0.94939 1.03162 0.97398 1.20888 0.93574 1.00119 0.98098 1.21084 1.00210 1.01163 0.91705 1.19516 0.92726 0.98496 0.94808 1.21042 0.95195 0.99632 0.87842 0.92817 0.98009 0.97967 0.94669 0.94210 0.94226 0.89762 0.94848 0.90057 0.89683 0.90206 0.75556 0.85711 0.85692 0.85730 0.88610 0.93779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -15.24 9.43 -34.44 -0.32 -15.57 16 8 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 9 C 0.19 5.40 5.69 36.00 0.20 5.61 16 10 O -0.38 -9.31 10.27 -35.23 -0.36 -9.67 16 11 C 0.07 1.21 5.99 37.16 0.22 1.44 16 12 C 0.06 0.90 5.33 -3.82 -0.02 0.88 16 13 N -0.52 -7.96 4.63 -236.20 -1.09 -9.06 16 14 C 0.05 0.67 5.57 -3.74 -0.02 0.65 16 15 C -0.07 -0.89 5.54 -27.94 -0.15 -1.04 16 16 C -0.09 -1.21 5.78 -104.45 -0.60 -1.82 16 17 C 0.10 1.24 6.67 -39.13 -0.26 0.98 16 18 O -0.50 -5.40 12.63 -19.40 -0.25 -5.65 16 19 C -0.15 -1.72 9.99 -39.50 -0.39 -2.11 16 20 C -0.11 -1.22 10.04 -39.68 -0.40 -1.62 16 21 C -0.12 -1.53 9.64 -39.45 -0.38 -1.91 16 22 C -0.05 -0.77 5.79 -104.64 -0.61 -1.37 16 23 C 0.09 1.29 4.90 -5.16 -0.03 1.26 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 27 H 0.04 0.63 6.41 -51.93 -0.33 0.30 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.49 8.07 -51.93 -0.42 0.07 16 30 H 0.08 1.25 7.91 -51.93 -0.41 0.84 16 31 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 32 H 0.08 0.94 7.87 -51.93 -0.41 0.54 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 35 H 0.39 2.63 9.06 45.56 0.41 3.04 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.10 1.48 6.52 -51.93 -0.34 1.14 16 40 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 LS Contribution 330.19 15.07 4.98 4.98 Total: -1.00 -33.87 330.19 -9.12 -42.99 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.25 Total: -1.09 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -2.86 Total: -13.12 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.36 Total: -35.57 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.61 Total: -15.32 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.87 -9.12 -42.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599646804.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.903 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds