Wall clock time and date at job start Mon Mar 30 2020 01:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48498 * 109.47019 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47128 * 300.00338 * 3 2 1 6 6 H 1.48494 * 109.47116 * 60.00476 * 3 2 1 7 7 C 1.37873 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00129 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00186 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47319 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.47150 * 64.99949 * 12 11 10 14 14 C 1.47158 * 110.99971 * 189.06247 * 13 12 11 15 15 C 1.52885 * 108.49880 * 165.35977 * 14 13 12 16 16 C 1.50711 * 109.95485 * 50.40898 * 15 14 13 17 17 C 1.39169 * 118.48978 * 163.23484 * 16 15 14 18 18 O 1.35892 * 119.88480 * 359.58008 * 17 16 15 19 19 C 1.38536 * 120.22668 * 179.60036 * 17 16 15 20 20 C 1.38162 * 119.76604 * 0.02562 * 19 17 16 21 21 C 1.38048 * 119.93449 * 0.09258 * 20 19 17 22 22 C 1.37739 * 121.68967 * 343.00089 * 16 15 14 23 23 C 1.46625 * 110.99841 * 66.04958 * 13 12 11 24 24 H 0.96998 * 119.99585 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47017 * 60.00460 * 9 7 2 26 26 H 1.08999 * 109.47472 * 300.00137 * 9 7 2 27 27 H 1.09002 * 109.47259 * 300.00293 * 11 10 9 28 28 H 1.09001 * 109.47074 * 60.00315 * 11 10 9 29 29 H 1.09001 * 109.47630 * 185.00204 * 12 11 10 30 30 H 1.09004 * 109.47346 * 305.00335 * 12 11 10 31 31 H 1.09007 * 109.63297 * 285.04819 * 14 13 12 32 32 H 1.08994 * 109.63612 * 45.64649 * 14 13 12 33 33 H 1.08999 * 109.39821 * 290.26074 * 15 14 13 34 34 H 1.09000 * 109.30952 * 170.50252 * 15 14 13 35 35 H 0.96703 * 114.00368 * 89.99659 * 18 17 16 36 36 H 1.07997 * 120.11273 * 180.02562 * 19 17 16 37 37 H 1.08004 * 120.03548 * 180.11653 * 20 19 17 38 38 H 1.07993 * 119.74904 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.26378 * 296.18153 * 23 13 12 40 40 H 1.09003 * 109.26832 * 55.64447 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 7 3.4079 -5.8872 1.2559 14 6 4.5896 -6.7628 1.2057 15 6 5.5230 -6.3842 2.3558 16 6 4.7515 -6.3350 3.6495 17 6 5.4606 -6.3600 4.8468 18 8 6.8173 -6.4359 4.8287 19 6 4.7882 -6.3080 6.0569 20 6 3.4087 -6.2318 6.0723 21 6 2.7067 -6.2096 4.8839 22 6 3.3762 -6.2619 3.6695 23 6 2.5632 -6.2392 2.4016 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 0.9451 -4.9822 0.8903 28 1 0.9446 -4.9827 -0.8897 29 1 2.1819 -6.9376 -0.0885 30 1 3.3216 -5.7961 -0.8412 31 1 4.2800 -7.8024 1.3127 32 1 5.1057 -6.6273 0.2553 33 1 5.9619 -5.4061 2.1589 34 1 6.3164 -7.1274 2.4357 35 1 7.2593 -5.5760 4.8126 36 1 5.3403 -6.3271 6.9848 37 1 2.8802 -6.1892 7.0132 38 1 1.6285 -6.1503 4.8994 39 1 1.7649 -5.5035 2.4993 40 1 2.1258 -7.2239 2.2369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599646804.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:17 Heat of formation + Delta-G solvation = -87.128160 kcal Electronic energy + Delta-G solvation = -21312.246492 eV Core-core repulsion = 18090.849990 eV Total energy + Delta-G solvation = -3221.396502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35283 -39.31399 -38.15970 -37.20191 -34.96740 -33.86049 -32.24601 -30.61566 -29.48244 -28.61443 -26.05242 -24.50439 -24.24699 -23.01220 -22.50473 -20.56430 -19.02762 -18.61530 -17.55413 -17.36906 -17.04219 -16.69286 -16.49805 -16.28111 -15.65905 -15.49468 -15.32074 -14.75080 -14.61693 -14.30502 -13.87556 -13.76361 -13.34207 -13.18334 -13.07139 -12.96409 -12.73066 -12.61355 -12.53192 -12.24945 -12.16976 -12.02953 -11.56660 -11.22632 -11.15532 -10.84907 -10.16569 -9.64679 -9.47384 -9.15705 -8.31224 -6.42782 0.28815 0.37406 1.39666 1.41144 1.56021 2.35649 2.63299 2.86442 3.02540 3.25236 3.32900 3.70827 3.75862 4.05471 4.12420 4.18807 4.22162 4.35858 4.37103 4.45057 4.49144 4.53906 4.64394 4.70053 4.78459 4.83310 4.88491 4.93380 4.99128 5.00203 5.20031 5.20984 5.44727 5.48687 5.56484 5.60238 5.89115 5.98804 6.11215 6.15101 6.58383 6.84124 6.87968 7.29585 8.81451 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.004174 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.696324 B = 6705.821300 C = 7233.419724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.209 3.791 10 O -0.395 6.395 11 C 0.055 3.945 12 C 0.069 3.931 13 N -0.546 5.546 14 C 0.055 3.945 15 C -0.067 4.067 16 C -0.111 4.111 17 C 0.094 3.906 18 O -0.504 6.504 19 C -0.154 4.154 20 C -0.108 4.108 21 C -0.137 4.137 22 C -0.077 4.077 23 C 0.094 3.906 24 H 0.270 0.730 25 H -0.015 1.015 26 H -0.019 1.019 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.406 0.594 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.135 0.865 39 H 0.074 0.926 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.007 -16.002 9.160 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.315 6.315 11 C -0.022 4.022 12 C -0.058 4.058 13 N -0.271 5.271 14 C -0.072 4.072 15 C -0.104 4.104 16 C -0.112 4.112 17 C 0.049 3.951 18 O -0.316 6.316 19 C -0.172 4.172 20 C -0.125 4.125 21 C -0.155 4.155 22 C -0.077 4.077 23 C -0.033 4.033 24 H 0.079 0.921 25 H 0.002 0.998 26 H -0.001 1.001 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.264 0.736 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.153 0.847 39 H 0.092 0.908 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.129 -15.981 9.205 20.578 hybrid contribution -0.599 0.607 -0.153 0.867 sum 8.530 -15.374 9.052 19.775 Atomic orbital electron populations 1.70077 1.07715 1.28499 1.50799 1.25935 0.95940 1.03286 0.93972 0.85163 0.78655 0.77437 0.78321 1.18961 1.19495 1.19661 1.21399 0.93967 0.90945 1.51835 0.92330 1.19782 0.88658 0.85027 0.93103 1.87905 1.34659 1.13857 1.95044 1.22617 0.95549 0.84634 0.99388 1.22123 0.95523 0.96063 0.92107 1.62098 1.08469 1.53939 1.02584 1.22189 0.91280 0.94120 0.99618 1.20382 0.97158 1.02591 0.90251 1.20087 0.93498 1.01827 0.95762 1.18498 0.83578 1.01161 0.91855 1.84710 1.14694 1.35827 1.96386 1.21606 0.95268 1.02407 0.97920 1.21228 0.93735 0.98850 0.98736 1.21323 1.00985 1.01386 0.91839 1.19659 0.93178 0.99770 0.95130 1.20956 0.94698 0.99678 0.87988 0.92092 0.99764 1.00134 0.94462 0.93258 0.90842 0.89604 0.93610 0.89171 0.90854 0.88897 0.73579 0.83622 0.83056 0.84739 0.90811 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.01 0.40 5.46 84.65 0.46 0.87 16 3 Si 0.98 45.20 29.54 68.60 2.03 47.23 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.54 -33.30 9.43 25.60 0.24 -33.06 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 12.11 5.69 71.24 0.41 12.52 16 10 O -0.40 -19.92 10.27 -148.98 -1.53 -21.45 16 11 C 0.06 2.08 5.99 71.98 0.43 2.51 16 12 C 0.07 2.01 5.33 86.30 0.46 2.47 16 13 N -0.55 -16.55 4.63 -901.19 -4.18 -20.72 16 14 C 0.06 1.33 5.57 86.22 0.48 1.81 16 15 C -0.07 -1.61 5.54 29.81 0.17 -1.45 16 16 C -0.11 -2.96 5.78 -19.76 -0.11 -3.07 16 17 C 0.09 2.23 6.67 22.56 0.15 2.38 16 18 O -0.50 -10.12 12.63 -92.33 -1.17 -11.29 16 19 C -0.15 -3.26 9.99 22.32 0.22 -3.03 16 20 C -0.11 -2.24 10.04 22.21 0.22 -2.02 16 21 C -0.14 -3.32 9.64 22.35 0.22 -3.11 16 22 C -0.08 -2.13 5.79 -19.88 -0.12 -2.25 16 23 C 0.09 2.67 4.90 85.59 0.42 3.09 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 26 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 27 H 0.04 1.38 6.41 -2.39 -0.02 1.36 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 30 H 0.09 2.45 7.91 -2.39 -0.02 2.43 16 31 H 0.05 0.99 8.05 -2.38 -0.02 0.97 16 32 H 0.09 1.97 7.87 -2.39 -0.02 1.95 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 1.95 7.85 -2.39 -0.02 1.93 16 35 H 0.41 4.89 9.06 -74.06 -0.67 4.22 16 36 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 39 H 0.07 2.36 6.52 -2.39 -0.02 2.34 16 40 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 Total: -1.00 -72.93 330.19 -0.55 -73.48 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.36 Total: 11.59 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 3.65 Total: -22.34 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -3.89 Total: -77.22 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -2.70 Total: -32.75 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.93 -0.55 -73.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599646804.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.647 kcal (2) G-P(sol) polarization free energy of solvation -72.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds