Wall clock time and date at job start Mon Mar 30 2020 02:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38258 * 119.99878 * 2 1 4 4 C 1.38211 * 120.00362 * 179.97438 * 3 2 1 5 5 C 1.38266 * 119.99316 * 359.77198 * 4 3 2 6 6 C 1.38209 * 120.00260 * 0.46066 * 5 4 3 7 7 C 1.50694 * 120.00049 * 179.78792 * 6 5 4 8 8 O 1.42893 * 109.47475 * 269.72639 * 7 6 5 9 9 C 1.42904 * 114.00538 * 180.02562 * 8 7 6 10 10 H 1.08993 * 109.46767 * 29.99923 * 9 8 7 11 11 C 1.53000 * 109.47071 * 270.00176 * 9 8 7 12 12 C 1.50693 * 109.47188 * 150.00251 * 9 8 7 13 13 O 1.21295 * 120.00419 * 14.38476 * 12 9 8 14 14 N 1.34782 * 119.99877 * 194.11485 * 12 9 8 15 15 C 1.46502 * 120.00062 * 5.52139 * 14 12 9 16 16 C 1.37090 * 120.00180 * 185.52699 * 14 12 9 17 17 H 1.08001 * 120.00248 * 24.51411 * 16 14 12 18 18 C 1.38950 * 119.99993 * 204.51678 * 16 14 12 19 19 N 1.31409 * 120.00394 * 7.91458 * 18 16 14 20 20 Si 1.86801 * 120.00202 * 187.91961 * 18 16 14 21 21 H 1.48500 * 109.47230 * 89.99551 * 20 18 16 22 22 H 1.48494 * 109.47280 * 209.99865 * 20 18 16 23 23 H 1.48509 * 109.47134 * 330.00013 * 20 18 16 24 24 C 1.38206 * 120.00369 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47517 * 270.02081 * 1 2 3 26 26 H 1.08999 * 109.47290 * 30.02352 * 1 2 3 27 27 H 1.09005 * 109.47187 * 150.02182 * 1 2 3 28 28 H 1.08004 * 119.99688 * 359.97438 * 3 2 1 29 29 H 1.07991 * 120.00537 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.99653 * 180.25411 * 5 4 3 31 31 H 1.09005 * 109.47488 * 149.72275 * 7 6 5 32 32 H 1.09003 * 109.46984 * 29.73195 * 7 6 5 33 33 H 1.09000 * 109.47254 * 305.12821 * 11 9 8 34 34 H 1.08998 * 109.47205 * 65.12325 * 11 9 8 35 35 H 1.09001 * 109.47408 * 185.12552 * 11 9 8 36 36 H 1.08999 * 109.47002 * 93.91825 * 15 14 12 37 37 H 1.08992 * 109.47471 * 213.92840 * 15 14 12 38 38 H 1.09003 * 109.46746 * 333.92374 * 15 14 12 39 39 H 0.97000 * 120.00432 * 179.97438 * 19 18 16 40 40 H 1.08007 * 119.99799 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2716 0.0001 0.0058 6 6 3.5806 -1.1969 0.0010 7 6 4.3341 -2.5019 0.0019 8 8 4.5724 -2.9155 -1.3450 9 6 5.2842 -4.1495 -1.4569 10 1 5.0550 -4.7803 -0.5981 11 6 6.7877 -3.8692 -1.4972 12 6 4.8707 -4.8548 -2.7228 13 8 4.2586 -4.2534 -3.5801 14 7 5.1857 -6.1526 -2.9048 15 6 5.8224 -6.9104 -1.8246 16 6 4.9106 -6.7636 -4.1008 17 1 4.8233 -6.1736 -5.0012 18 6 4.7438 -8.1420 -4.1546 19 7 4.6947 -8.8419 -3.0435 20 14 4.5897 -9.0004 -5.8066 21 1 5.9383 -9.3941 -6.2876 22 1 3.7440 -10.2119 -5.6579 23 1 3.9643 -8.0774 -6.7876 24 6 2.1981 -1.1969 0.0005 25 1 -0.3634 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6582 2.1327 -0.0004 29 1 4.1203 2.1327 0.0001 30 1 5.3516 0.0001 0.0104 31 1 3.7451 -3.2613 0.5164 32 1 5.2865 -2.3712 0.5158 33 1 7.0048 -3.1657 -2.3009 34 1 7.1032 -3.4419 -0.5454 35 1 7.3264 -4.8002 -1.6738 36 1 5.0584 -7.4289 -1.2454 37 1 6.5129 -7.6386 -2.2497 38 1 6.3695 -6.2270 -1.1751 39 1 4.5780 -9.8041 -3.0811 40 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601023285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:36 Heat of formation + Delta-G solvation = -50.309502 kcal Electronic energy + Delta-G solvation = -21176.247079 eV Core-core repulsion = 17956.447154 eV Total energy + Delta-G solvation = -3219.799925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.55679 -38.81481 -36.93560 -34.55876 -33.12798 -32.09444 -31.50557 -30.18403 -27.05427 -26.26031 -26.02712 -24.85167 -22.78304 -22.08506 -20.64033 -19.08157 -16.98139 -16.70423 -16.27537 -15.84298 -15.63980 -15.07751 -14.63597 -14.49666 -14.00175 -13.76010 -13.66771 -13.40551 -13.08553 -12.78080 -12.64036 -12.31480 -12.03403 -11.87145 -11.83311 -11.49873 -11.30523 -11.10013 -11.04085 -10.91373 -10.79740 -10.61748 -10.33126 -10.24257 -9.40594 -8.99767 -8.82790 -8.62775 -8.17649 -7.64662 -6.27136 -3.87004 1.29520 1.41317 3.18390 3.26620 3.32476 3.55795 3.89940 4.05593 4.30030 4.76096 4.78724 4.88071 5.08643 5.13836 5.16917 5.28228 5.30086 5.39534 5.46713 5.52392 5.56437 5.63907 5.68474 5.74233 5.78574 5.98205 6.05902 6.12685 6.15029 6.25455 6.45053 6.54061 6.57082 6.66220 6.87732 7.01505 7.24779 7.48899 7.58486 8.17355 8.53585 9.22826 9.43541 10.01381 10.75819 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.003671 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.995737 B = 7625.611812 C = 8121.566983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.122 4.122 5 C -0.105 4.105 6 C -0.077 4.077 7 C 0.097 3.903 8 O -0.349 6.349 9 C 0.078 3.922 10 H 0.071 0.929 11 C -0.168 4.168 12 C 0.451 3.549 13 O -0.568 6.568 14 N -0.447 5.447 15 C 0.107 3.893 16 C -0.302 4.302 17 H 0.097 0.903 18 C 0.030 3.970 19 N -0.887 5.887 20 Si 0.928 3.072 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.096 4.096 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.267 0.733 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 12.993 10.937 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.123 4.123 6 C -0.077 4.077 7 C 0.021 3.979 8 O -0.267 6.267 9 C 0.016 3.984 10 H 0.089 0.911 11 C -0.226 4.226 12 C 0.238 3.762 13 O -0.450 6.450 14 N -0.168 5.168 15 C -0.037 4.037 16 C -0.429 4.429 17 H 0.115 0.885 18 C -0.173 4.173 19 N -0.527 5.527 20 Si 0.755 3.245 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.193 1.193 24 C -0.114 4.114 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.958 13.174 10.390 16.805 hybrid contribution 0.117 -0.825 -0.397 0.923 sum -0.842 12.348 9.993 15.907 Atomic orbital electron populations 1.20785 0.91188 1.02946 1.02112 1.19901 0.96120 0.93080 1.00096 1.21017 0.94295 0.97353 1.01091 1.21080 0.94293 0.97823 1.00833 1.21036 0.99891 0.91871 0.99477 1.19610 0.93654 0.94171 1.00268 1.21369 0.97899 0.93073 0.85608 1.88136 1.76483 1.38321 1.23749 1.21924 0.92000 0.85963 0.98497 0.91073 1.22259 0.95054 1.03098 1.02183 1.19793 0.84325 0.83658 0.88417 1.90538 1.43116 1.66150 1.45213 1.43495 1.51951 1.07693 1.13711 1.21655 0.97722 0.94551 0.89756 1.19649 1.46658 0.90398 0.86241 0.88525 1.25359 0.96373 0.96838 0.98681 1.69973 1.48978 1.07459 1.26264 0.85897 0.78194 0.78674 0.81778 1.20400 1.20920 1.19343 1.21001 0.93539 0.97870 0.98999 0.91327 0.91637 0.91317 0.86280 0.86081 0.86024 0.92597 0.92697 0.91457 0.92546 0.90622 0.92179 0.91369 0.95278 0.92319 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.00 0.36 -0.73 16 2 C -0.09 -1.13 5.88 -104.63 -0.62 -1.75 16 3 C -0.12 -1.35 9.70 -39.58 -0.38 -1.74 16 4 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 5 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 6 C -0.08 -1.12 5.51 -104.63 -0.58 -1.70 16 7 C 0.10 1.46 5.87 36.00 0.21 1.67 16 8 O -0.35 -6.98 9.54 -54.72 -0.52 -7.50 16 9 C 0.08 1.53 2.28 -27.89 -0.06 1.47 16 10 H 0.07 1.26 6.89 -51.93 -0.36 0.90 16 11 C -0.17 -2.75 9.13 37.16 0.34 -2.41 16 12 C 0.45 11.62 6.92 -10.99 -0.08 11.55 16 13 O -0.57 -17.07 16.32 -13.94 -0.23 -17.30 16 14 N -0.45 -11.72 3.02 -122.20 -0.37 -12.09 16 15 C 0.11 2.38 8.10 59.85 0.49 2.86 16 16 C -0.30 -8.59 9.23 -14.94 -0.14 -8.73 16 17 H 0.10 2.88 7.49 -52.49 -0.39 2.49 16 18 C 0.03 0.81 5.19 -17.47 -0.09 0.71 16 19 N -0.89 -23.79 10.54 55.50 0.59 -23.20 16 20 Si 0.93 21.07 29.56 -169.99 -5.02 16.05 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.10 -1.35 9.36 -39.59 -0.37 -1.72 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 29 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.06 0.78 8.03 -51.93 -0.42 0.36 16 32 H 0.05 0.69 7.94 -51.93 -0.41 0.28 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.73 7.99 -51.93 -0.42 0.32 16 35 H 0.08 1.21 6.31 -51.93 -0.33 0.89 16 36 H 0.06 1.40 7.41 -51.93 -0.38 1.02 16 37 H 0.07 1.58 7.23 -51.93 -0.38 1.21 16 38 H 0.03 0.52 4.60 -51.93 -0.24 0.29 16 39 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -33.54 334.10 -8.06 -41.60 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.83 Total: 1.46 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.70 Total: -4.04 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.22 Total: -35.29 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.75 Total: -24.80 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.54 -8.06 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601023285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.713 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds