Wall clock time and date at job start Mon Mar 30 2020 02:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38258 * 119.99878 * 2 1 4 4 C 1.38211 * 120.00362 * 179.97438 * 3 2 1 5 5 C 1.38266 * 119.99316 * 359.77198 * 4 3 2 6 6 C 1.38209 * 120.00260 * 0.46066 * 5 4 3 7 7 C 1.50694 * 120.00049 * 179.78792 * 6 5 4 8 8 O 1.42893 * 109.47475 * 269.72639 * 7 6 5 9 9 C 1.42904 * 114.00538 * 180.02562 * 8 7 6 10 10 H 1.08993 * 109.46767 * 29.99923 * 9 8 7 11 11 C 1.53000 * 109.47071 * 270.00176 * 9 8 7 12 12 C 1.50693 * 109.47188 * 150.00251 * 9 8 7 13 13 O 1.21295 * 120.00419 * 14.38476 * 12 9 8 14 14 N 1.34782 * 119.99877 * 194.11485 * 12 9 8 15 15 C 1.46502 * 120.00062 * 5.52139 * 14 12 9 16 16 C 1.37090 * 120.00180 * 185.52699 * 14 12 9 17 17 H 1.08001 * 120.00248 * 24.51411 * 16 14 12 18 18 C 1.38950 * 119.99993 * 204.51678 * 16 14 12 19 19 N 1.31409 * 120.00394 * 7.91458 * 18 16 14 20 20 Si 1.86801 * 120.00202 * 187.91961 * 18 16 14 21 21 H 1.48500 * 109.47230 * 89.99551 * 20 18 16 22 22 H 1.48494 * 109.47280 * 209.99865 * 20 18 16 23 23 H 1.48509 * 109.47134 * 330.00013 * 20 18 16 24 24 C 1.38206 * 120.00369 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47517 * 270.02081 * 1 2 3 26 26 H 1.08999 * 109.47290 * 30.02352 * 1 2 3 27 27 H 1.09005 * 109.47187 * 150.02182 * 1 2 3 28 28 H 1.08004 * 119.99688 * 359.97438 * 3 2 1 29 29 H 1.07991 * 120.00537 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.99653 * 180.25411 * 5 4 3 31 31 H 1.09005 * 109.47488 * 149.72275 * 7 6 5 32 32 H 1.09003 * 109.46984 * 29.73195 * 7 6 5 33 33 H 1.09000 * 109.47254 * 305.12821 * 11 9 8 34 34 H 1.08998 * 109.47205 * 65.12325 * 11 9 8 35 35 H 1.09001 * 109.47408 * 185.12552 * 11 9 8 36 36 H 1.08999 * 109.47002 * 93.91825 * 15 14 12 37 37 H 1.08992 * 109.47471 * 213.92840 * 15 14 12 38 38 H 1.09003 * 109.46746 * 333.92374 * 15 14 12 39 39 H 0.97000 * 120.00432 * 179.97438 * 19 18 16 40 40 H 1.08007 * 119.99799 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2716 0.0001 0.0058 6 6 3.5806 -1.1969 0.0010 7 6 4.3341 -2.5019 0.0019 8 8 4.5724 -2.9155 -1.3450 9 6 5.2842 -4.1495 -1.4569 10 1 5.0550 -4.7803 -0.5981 11 6 6.7877 -3.8692 -1.4972 12 6 4.8707 -4.8548 -2.7228 13 8 4.2586 -4.2534 -3.5801 14 7 5.1857 -6.1526 -2.9048 15 6 5.8224 -6.9104 -1.8246 16 6 4.9106 -6.7636 -4.1008 17 1 4.8233 -6.1736 -5.0012 18 6 4.7438 -8.1420 -4.1546 19 7 4.6947 -8.8419 -3.0435 20 14 4.5897 -9.0004 -5.8066 21 1 5.9383 -9.3941 -6.2876 22 1 3.7440 -10.2119 -5.6579 23 1 3.9643 -8.0774 -6.7876 24 6 2.1981 -1.1969 0.0005 25 1 -0.3634 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6582 2.1327 -0.0004 29 1 4.1203 2.1327 0.0001 30 1 5.3516 0.0001 0.0104 31 1 3.7451 -3.2613 0.5164 32 1 5.2865 -2.3712 0.5158 33 1 7.0048 -3.1657 -2.3009 34 1 7.1032 -3.4419 -0.5454 35 1 7.3264 -4.8002 -1.6738 36 1 5.0584 -7.4289 -1.2454 37 1 6.5129 -7.6386 -2.2497 38 1 6.3695 -6.2270 -1.1751 39 1 4.5780 -9.8041 -3.0811 40 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601023285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:35 Heat of formation + Delta-G solvation = -69.899599 kcal Electronic energy + Delta-G solvation = -21177.096570 eV Core-core repulsion = 17956.447154 eV Total energy + Delta-G solvation = -3220.649416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87532 -40.28432 -38.47252 -36.63040 -34.24857 -33.74037 -32.77218 -31.61463 -28.19359 -27.93969 -27.16399 -26.68112 -24.43987 -23.02184 -21.62511 -20.89548 -18.96379 -18.26590 -17.42735 -17.36656 -16.91230 -16.72896 -16.00897 -15.94206 -15.69408 -15.33246 -14.80177 -14.59837 -14.23812 -14.10490 -13.84872 -13.60853 -13.46787 -13.20927 -13.12902 -13.01300 -12.80636 -12.78431 -12.61455 -12.32674 -12.25558 -12.15066 -11.91777 -11.76071 -11.04695 -10.80734 -10.16004 -9.78458 -9.71683 -9.54251 -8.33213 -6.02862 0.32097 0.46752 1.36316 1.39665 1.52112 1.95614 2.18868 2.46491 2.92520 3.06791 3.35638 3.79056 3.83465 3.94820 4.02203 4.06610 4.18241 4.22335 4.34890 4.36980 4.50605 4.54453 4.61189 4.72789 4.80092 4.81382 4.83273 4.96578 5.02815 5.12892 5.20332 5.28989 5.39920 5.41930 5.53291 5.64155 5.68374 5.98440 6.10658 6.21208 6.51364 7.15417 7.41684 7.99346 8.67233 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.003671 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.995737 B = 7625.611812 C = 8121.566983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.122 4.122 4 C -0.123 4.123 5 C -0.116 4.116 6 C -0.102 4.102 7 C 0.093 3.907 8 O -0.382 6.382 9 C 0.088 3.912 10 H 0.094 0.906 11 C -0.160 4.160 12 C 0.434 3.566 13 O -0.627 6.627 14 N -0.458 5.458 15 C 0.115 3.885 16 C -0.345 4.345 17 H 0.067 0.933 18 C 0.000 4.000 19 N -0.896 5.896 20 Si 0.991 3.009 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.279 1.279 24 C -0.123 4.123 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.136 0.864 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.274 0.726 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 13.708 12.318 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.102 4.102 7 C 0.018 3.982 8 O -0.301 6.301 9 C 0.027 3.973 10 H 0.112 0.888 11 C -0.217 4.217 12 C 0.223 3.777 13 O -0.514 6.514 14 N -0.178 5.178 15 C -0.027 4.027 16 C -0.473 4.473 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.535 5.535 20 Si 0.814 3.186 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.204 1.204 24 C -0.142 4.142 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.166 0.834 29 H 0.168 0.832 30 H 0.154 0.846 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.181 13.864 11.821 18.221 hybrid contribution -0.181 -1.003 -0.786 1.287 sum -0.362 12.861 11.036 16.951 Atomic orbital electron populations 1.20828 0.89539 1.03298 1.03231 1.20254 0.97555 0.92916 0.99494 1.21416 0.94624 0.98060 0.99836 1.21482 0.94644 0.98511 0.99446 1.21302 1.00808 0.91858 0.99456 1.19760 0.93954 0.94671 1.01837 1.21615 0.99606 0.93491 0.83515 1.88096 1.76880 1.38065 1.27083 1.21802 0.93926 0.86150 0.95456 0.88812 1.22221 0.92206 1.03205 1.04102 1.20970 0.83231 0.83527 0.89957 1.90481 1.45679 1.67391 1.47801 1.43768 1.51873 1.08317 1.13841 1.21647 0.97138 0.94992 0.88966 1.19611 1.49660 0.91282 0.86753 0.91475 1.26107 0.95103 0.96651 1.02335 1.70044 1.47779 1.08015 1.27653 0.84974 0.78902 0.77396 0.77302 1.18677 1.19567 1.20435 1.21153 0.93928 0.98477 1.00606 0.89762 0.90059 0.92174 0.83432 0.83177 0.84589 0.92209 0.89725 0.92901 0.88151 0.90293 0.93402 0.92576 0.90688 0.91589 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 10.01 71.24 0.71 -1.32 16 2 C -0.10 -2.44 5.88 -19.87 -0.12 -2.55 16 3 C -0.12 -2.49 9.70 22.27 0.22 -2.28 16 4 C -0.12 -2.54 10.05 22.27 0.22 -2.32 16 5 C -0.12 -2.84 9.70 22.27 0.22 -2.62 16 6 C -0.10 -2.94 5.51 -19.87 -0.11 -3.05 16 7 C 0.09 2.73 5.87 71.23 0.42 3.15 16 8 O -0.38 -15.31 9.54 -130.35 -1.24 -16.55 16 9 C 0.09 3.40 2.28 29.85 0.07 3.47 16 10 H 0.09 3.16 6.89 -2.39 -0.02 3.14 16 11 C -0.16 -4.88 9.13 71.98 0.66 -4.23 16 12 C 0.43 23.00 6.92 87.65 0.61 23.61 16 13 O -0.63 -39.69 16.32 15.55 0.25 -39.44 16 14 N -0.46 -24.54 3.02 -658.90 -1.99 -26.52 16 15 C 0.12 5.07 8.10 127.77 1.04 6.11 16 16 C -0.35 -20.35 9.23 84.04 0.78 -19.57 16 17 H 0.07 4.25 7.49 -2.91 -0.02 4.23 16 18 C 0.00 -0.01 5.19 84.93 0.44 0.43 16 19 N -0.90 -47.84 10.54 21.66 0.23 -47.61 16 20 Si 0.99 43.34 29.56 68.60 2.03 45.37 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 C -0.12 -3.54 9.36 22.27 0.21 -3.33 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 27 H 0.06 1.17 8.09 -2.38 -0.02 1.16 16 28 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.15 2.14 8.06 -2.92 -0.02 2.12 16 30 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.06 1.64 8.03 -2.38 -0.02 1.63 16 32 H 0.08 1.91 7.94 -2.39 -0.02 1.89 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 2.20 7.99 -2.39 -0.02 2.18 16 35 H 0.08 2.34 6.31 -2.39 -0.02 2.33 16 36 H 0.05 2.21 7.41 -2.39 -0.02 2.19 16 37 H 0.06 2.58 7.23 -2.39 -0.02 2.56 16 38 H 0.07 2.56 4.60 -2.39 -0.01 2.55 16 39 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 40 H 0.11 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -76.28 334.10 5.65 -70.62 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.02 Total: 18.65 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 5.35 Total: -4.51 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.76 Total: -74.14 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -0.99 Total: -55.99 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -76.28 5.65 -70.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601023285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.725 kcal (2) G-P(sol) polarization free energy of solvation -76.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds