Wall clock time and date at job start Mon Mar 30 2020 01:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47415 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47275 * 120.00128 * 3 2 1 6 6 H 1.48501 * 109.47305 * 240.00164 * 3 2 1 7 7 C 1.40273 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00194 * 160.73886 * 7 2 1 9 9 C 1.40891 * 119.99571 * 340.74281 * 7 2 1 10 10 C 1.40712 * 120.32906 * 325.79352 * 9 7 2 11 11 C 1.37601 * 119.87956 * 179.97438 * 10 9 7 12 12 C 1.38824 * 120.57302 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67578 * 0.02562 * 12 11 10 14 14 C 1.39235 * 120.09183 * 359.69536 * 13 12 11 15 15 C 1.47435 * 120.28378 * 180.28231 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.67695 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.68142 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47394 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47191 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47074 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47074 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.47028 * 179.97438 * 22 21 20 24 24 H 0.97003 * 120.00071 * 174.83473 * 1 2 3 25 25 H 1.07997 * 120.05467 * 359.95598 * 10 9 7 26 26 H 1.08002 * 119.70941 * 180.02562 * 11 10 9 27 27 H 1.07988 * 119.66507 * 179.97438 * 12 11 10 28 28 H 1.08001 * 119.95864 * 179.97438 * 13 12 11 29 29 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 30 30 H 1.09004 * 109.47039 * 299.99900 * 18 17 15 31 31 H 1.09005 * 109.47040 * 59.99578 * 18 17 15 32 32 H 1.08999 * 109.47498 * 299.99726 * 19 18 17 33 33 H 1.09005 * 109.47069 * 59.99967 * 19 18 17 34 34 H 1.09004 * 109.47270 * 300.00289 * 20 19 18 35 35 H 1.08999 * 109.47133 * 60.00514 * 20 19 18 36 36 H 1.09004 * 109.47249 * 300.00229 * 21 20 19 37 37 H 1.08999 * 109.46781 * 60.00225 * 21 20 19 38 38 H 1.08996 * 109.47508 * 300.00400 * 22 21 20 39 39 H 1.09005 * 109.47011 * 60.00018 * 22 21 20 40 40 H 0.96702 * 113.99666 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2753 2.7465 0.0006 5 1 3.0941 1.6965 1.2125 6 1 3.0940 1.6965 -1.2125 7 6 2.0078 -1.2148 -0.0005 8 1 3.0424 -1.2408 -0.3091 9 6 1.3624 -2.4009 0.4014 10 6 0.3864 -2.3706 1.4145 11 6 -0.2385 -3.5346 1.7995 12 6 0.0855 -4.7425 1.1969 13 6 1.0414 -4.7994 0.2001 14 6 1.6870 -3.6377 -0.2151 15 6 2.7028 -3.6925 -1.2823 16 8 3.2197 -2.6672 -1.6829 17 7 3.0584 -4.8789 -1.8138 18 6 4.0681 -4.9334 -2.8738 19 6 4.2856 -6.3876 -3.2967 20 6 5.3397 -6.4444 -4.4042 21 6 5.5567 -7.8986 -4.8276 22 6 6.6103 -7.9554 -5.9355 23 8 6.8134 -9.3137 -6.3305 24 1 -0.4850 -0.8367 -0.0756 25 1 0.1285 -1.4355 1.8893 26 1 -0.9875 -3.5080 2.5771 27 1 -0.4137 -5.6472 1.5107 28 1 1.2848 -5.7455 -0.2604 29 1 2.6458 -5.6966 -1.4946 30 1 3.7270 -4.3525 -3.7308 31 1 5.0059 -4.5188 -2.5039 32 1 4.6269 -6.9681 -2.4397 33 1 3.3479 -6.8026 -3.6665 34 1 4.9980 -5.8640 -5.2612 35 1 6.2774 -6.0294 -4.0349 36 1 5.8982 -8.4795 -3.9707 37 1 4.6188 -8.3133 -5.1970 38 1 6.2684 -7.3748 -6.7922 39 1 7.5483 -7.5406 -5.5664 40 1 7.4699 -9.4254 -7.0317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601540216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:14 Heat of formation + Delta-G solvation = -96.861639 kcal Electronic energy + Delta-G solvation = -20547.889457 eV Core-core repulsion = 17326.070880 eV Total energy + Delta-G solvation = -3221.818577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.04177 -37.65513 -37.04870 -35.65250 -34.06788 -33.32589 -30.58740 -29.60584 -29.09321 -25.76263 -24.86500 -22.55398 -21.64740 -21.35944 -20.81816 -19.37926 -18.05784 -17.60248 -16.38684 -16.33005 -15.26455 -15.13390 -14.74064 -14.42392 -14.10565 -14.02718 -13.84594 -13.55420 -12.79680 -12.73278 -12.56851 -12.22509 -11.97242 -11.82835 -11.44542 -11.18057 -11.16068 -11.11623 -10.91569 -10.74120 -10.73751 -10.36044 -10.29674 -10.15617 -9.60676 -9.06966 -8.50138 -8.37704 -7.78433 -7.60040 -7.14017 -4.45528 2.24954 2.74231 3.20792 3.31529 3.41454 3.72761 4.04640 4.06823 4.08480 4.63090 4.65310 4.78190 4.87922 4.98709 5.10434 5.30663 5.42378 5.48665 5.54124 5.62453 5.73367 5.86787 5.87440 5.94104 6.05771 6.14636 6.19935 6.26276 6.52694 6.72179 6.99588 7.13210 7.26847 7.28613 7.49902 7.61496 7.72724 7.89496 8.09946 8.21920 8.38867 8.74033 8.86713 9.37381 10.04813 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020921 B = 0.003435 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.030781 B = 8149.260523 C = 9350.674387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.031 3.969 3 Si 1.071 2.929 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.466 4.466 8 H 0.105 0.895 9 C 0.120 3.880 10 C -0.201 4.201 11 C -0.076 4.076 12 C -0.260 4.260 13 C -0.044 4.044 14 C -0.266 4.266 15 C 0.562 3.438 16 O -0.538 6.538 17 N -0.750 5.750 18 C 0.125 3.875 19 C -0.129 4.129 20 C -0.114 4.114 21 C -0.120 4.120 22 C 0.074 3.926 23 O -0.578 6.578 24 H 0.298 0.702 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.391 0.609 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.520 -11.197 -7.532 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.191 4.191 3 Si 0.894 3.106 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.493 4.493 8 H 0.123 0.877 9 C 0.115 3.885 10 C -0.220 4.220 11 C -0.095 4.095 12 C -0.279 4.279 13 C -0.062 4.062 14 C -0.270 4.270 15 C 0.356 3.644 16 O -0.417 6.417 17 N -0.405 5.405 18 C 0.001 3.999 19 C -0.167 4.167 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.004 4.004 23 O -0.383 6.383 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.225 0.775 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 8.192 -8.873 -7.325 14.124 hybrid contribution 0.258 -2.177 -0.328 2.217 sum 8.450 -11.050 -7.653 15.877 Atomic orbital electron populations 1.70390 1.08243 1.34301 1.28767 1.27277 0.95702 1.04701 0.91410 0.83555 0.75534 0.73279 0.78238 1.19946 1.19961 1.19794 1.21172 1.01676 0.91916 1.34533 0.87718 1.17515 0.89731 0.92074 0.89131 1.21252 1.03021 0.97114 1.00627 1.20745 0.97643 0.93203 0.97885 1.20242 1.05905 0.96712 1.05086 1.20722 0.94841 0.95362 0.95321 1.19409 1.07917 0.95333 1.04388 1.18384 0.82046 0.82145 0.81809 1.90673 1.55359 1.33094 1.62540 1.46015 1.44076 1.09601 1.40832 1.21124 0.92335 0.95530 0.90947 1.21766 0.99493 0.96711 0.98727 1.21407 0.99466 0.95639 0.98673 1.21529 0.98972 0.97237 0.98031 1.22240 0.98340 0.82679 0.97142 1.86480 1.64915 1.27135 1.59767 0.88814 0.87531 0.88872 0.88895 0.89111 0.77483 0.92269 0.92278 0.91342 0.91353 0.91414 0.91416 0.91186 0.91190 0.93596 0.93611 0.77490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.43 12.57 55.56 0.70 -20.73 16 2 C 0.03 0.80 5.04 -17.30 -0.09 0.72 16 3 Si 1.07 22.68 29.98 -169.99 -5.10 17.58 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.47 -12.93 7.65 -37.81 -0.29 -13.22 16 8 H 0.11 3.03 5.92 -52.49 -0.31 2.72 16 9 C 0.12 3.23 5.17 -106.54 -0.55 2.68 16 10 C -0.20 -5.05 7.87 -38.88 -0.31 -5.35 16 11 C -0.08 -1.69 10.01 -39.60 -0.40 -2.09 16 12 C -0.26 -5.48 10.03 -39.37 -0.39 -5.88 16 13 C -0.04 -0.93 9.53 -39.22 -0.37 -1.30 16 14 C -0.27 -6.53 5.92 -104.36 -0.62 -7.14 16 15 C 0.56 13.21 7.73 -12.52 -0.10 13.12 16 16 O -0.54 -14.44 13.56 5.27 0.07 -14.37 16 17 N -0.75 -13.39 5.51 -61.38 -0.34 -13.73 16 18 C 0.12 1.86 5.67 -4.05 -0.02 1.84 16 19 C -0.13 -1.38 5.33 -26.73 -0.14 -1.52 16 20 C -0.11 -1.03 5.21 -26.73 -0.14 -1.17 16 21 C -0.12 -1.05 5.58 -26.73 -0.15 -1.20 16 22 C 0.07 0.58 7.05 37.16 0.26 0.84 16 23 O -0.58 -5.01 13.66 -35.23 -0.48 -5.49 16 24 H 0.30 8.23 6.55 -40.82 -0.27 7.96 16 25 H 0.11 2.72 6.94 -52.49 -0.36 2.36 16 26 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.09 1.58 6.41 -52.49 -0.34 1.25 16 29 H 0.39 5.99 6.51 -40.82 -0.27 5.73 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 1.50 9.12 45.56 0.42 1.91 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -31.90 333.39 -8.42 -40.32 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.00 Total: 11.07 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -3.31 Total: -19.68 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.36 Total: -34.46 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.41 Total: -19.86 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.10 Total: 17.58 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.90 -8.42 -40.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601540216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.539 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds