Wall clock time and date at job start Mon Mar 30 2020 01:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47415 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47275 * 120.00128 * 3 2 1 6 6 H 1.48501 * 109.47305 * 240.00164 * 3 2 1 7 7 C 1.40273 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00194 * 160.73886 * 7 2 1 9 9 C 1.40891 * 119.99571 * 340.74281 * 7 2 1 10 10 C 1.40712 * 120.32906 * 325.79352 * 9 7 2 11 11 C 1.37601 * 119.87956 * 179.97438 * 10 9 7 12 12 C 1.38824 * 120.57302 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67578 * 0.02562 * 12 11 10 14 14 C 1.39235 * 120.09183 * 359.69536 * 13 12 11 15 15 C 1.47435 * 120.28378 * 180.28231 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.67695 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.68142 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47394 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47191 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47074 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47074 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.47028 * 179.97438 * 22 21 20 24 24 H 0.97003 * 120.00071 * 174.83473 * 1 2 3 25 25 H 1.07997 * 120.05467 * 359.95598 * 10 9 7 26 26 H 1.08002 * 119.70941 * 180.02562 * 11 10 9 27 27 H 1.07988 * 119.66507 * 179.97438 * 12 11 10 28 28 H 1.08001 * 119.95864 * 179.97438 * 13 12 11 29 29 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 30 30 H 1.09004 * 109.47039 * 299.99900 * 18 17 15 31 31 H 1.09005 * 109.47040 * 59.99578 * 18 17 15 32 32 H 1.08999 * 109.47498 * 299.99726 * 19 18 17 33 33 H 1.09005 * 109.47069 * 59.99967 * 19 18 17 34 34 H 1.09004 * 109.47270 * 300.00289 * 20 19 18 35 35 H 1.08999 * 109.47133 * 60.00514 * 20 19 18 36 36 H 1.09004 * 109.47249 * 300.00229 * 21 20 19 37 37 H 1.08999 * 109.46781 * 60.00225 * 21 20 19 38 38 H 1.08996 * 109.47508 * 300.00400 * 22 21 20 39 39 H 1.09005 * 109.47011 * 60.00018 * 22 21 20 40 40 H 0.96702 * 113.99666 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2753 2.7465 0.0006 5 1 3.0941 1.6965 1.2125 6 1 3.0940 1.6965 -1.2125 7 6 2.0078 -1.2148 -0.0005 8 1 3.0424 -1.2408 -0.3091 9 6 1.3624 -2.4009 0.4014 10 6 0.3864 -2.3706 1.4145 11 6 -0.2385 -3.5346 1.7995 12 6 0.0855 -4.7425 1.1969 13 6 1.0414 -4.7994 0.2001 14 6 1.6870 -3.6377 -0.2151 15 6 2.7028 -3.6925 -1.2823 16 8 3.2197 -2.6672 -1.6829 17 7 3.0584 -4.8789 -1.8138 18 6 4.0681 -4.9334 -2.8738 19 6 4.2856 -6.3876 -3.2967 20 6 5.3397 -6.4444 -4.4042 21 6 5.5567 -7.8986 -4.8276 22 6 6.6103 -7.9554 -5.9355 23 8 6.8134 -9.3137 -6.3305 24 1 -0.4850 -0.8367 -0.0756 25 1 0.1285 -1.4355 1.8893 26 1 -0.9875 -3.5080 2.5771 27 1 -0.4137 -5.6472 1.5107 28 1 1.2848 -5.7455 -0.2604 29 1 2.6458 -5.6966 -1.4946 30 1 3.7270 -4.3525 -3.7308 31 1 5.0059 -4.5188 -2.5039 32 1 4.6269 -6.9681 -2.4397 33 1 3.3479 -6.8026 -3.6665 34 1 4.9980 -5.8640 -5.2612 35 1 6.2774 -6.0294 -4.0349 36 1 5.8982 -8.4795 -3.9707 37 1 4.6188 -8.3133 -5.1970 38 1 6.2684 -7.3748 -6.7922 39 1 7.5483 -7.5406 -5.5664 40 1 7.4699 -9.4254 -7.0317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601540216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:14 Heat of formation + Delta-G solvation = -119.201448 kcal Electronic energy + Delta-G solvation = -20548.858184 eV Core-core repulsion = 17326.070880 eV Total energy + Delta-G solvation = -3222.787304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.81600 -38.90852 -38.21943 -36.81622 -35.85945 -34.67369 -32.13410 -31.34317 -30.48409 -27.32351 -26.25797 -24.07683 -22.98815 -22.47758 -22.15925 -21.05599 -19.93401 -18.22532 -18.08042 -17.11876 -16.88751 -16.51801 -16.22488 -15.85676 -15.70329 -15.45190 -15.13761 -15.02354 -14.43664 -14.01824 -13.97691 -13.62190 -13.47679 -12.95100 -12.81467 -12.71689 -12.49839 -12.42177 -12.11715 -12.02399 -11.93903 -11.84703 -11.56354 -11.44796 -10.96557 -10.87234 -10.36569 -10.00433 -9.60977 -9.49878 -9.10799 -6.46690 0.39695 0.90269 1.46164 1.61746 1.76562 2.24827 2.30880 2.42415 2.74003 3.31445 3.55766 3.93188 3.94709 4.10420 4.20013 4.23303 4.28114 4.44296 4.47475 4.49897 4.60350 4.70971 4.81877 4.85955 4.87454 4.90652 5.00959 5.12491 5.15475 5.34225 5.39060 5.42737 5.59677 5.65750 5.71304 5.89470 5.96386 6.19963 6.33294 6.69094 6.85479 6.88991 6.92652 7.60674 8.03840 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020921 B = 0.003435 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.030781 B = 8149.260523 C = 9350.674387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C -0.004 4.004 3 Si 1.116 2.884 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.271 1.271 7 C -0.511 4.511 8 H 0.080 0.920 9 C 0.094 3.906 10 C -0.226 4.226 11 C -0.072 4.072 12 C -0.244 4.244 13 C -0.042 4.042 14 C -0.284 4.284 15 C 0.555 3.445 16 O -0.581 6.581 17 N -0.729 5.729 18 C 0.122 3.878 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.117 4.117 22 C 0.071 3.929 23 O -0.599 6.599 24 H 0.282 0.718 25 H 0.089 0.911 26 H 0.125 0.875 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.407 0.593 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.621 -13.897 -7.611 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.219 4.219 3 Si 0.933 3.067 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.196 1.196 7 C -0.539 4.539 8 H 0.098 0.902 9 C 0.090 3.910 10 C -0.245 4.245 11 C -0.091 4.091 12 C -0.263 4.263 13 C -0.060 4.060 14 C -0.289 4.289 15 C 0.348 3.652 16 O -0.463 6.463 17 N -0.383 5.383 18 C -0.001 4.001 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.006 4.006 23 O -0.408 6.408 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.143 0.857 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.244 0.756 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.299 -11.648 -7.412 16.109 hybrid contribution 0.215 -1.666 -0.309 1.708 sum 8.514 -13.314 -7.721 17.589 Atomic orbital electron populations 1.70502 1.08605 1.33062 1.31975 1.28494 0.95862 1.07417 0.90119 0.83020 0.74791 0.70055 0.78798 1.18814 1.18349 1.19639 1.21094 1.01100 0.93618 1.38038 0.90180 1.17929 0.90448 0.93025 0.89636 1.21210 1.04253 0.97850 1.01213 1.21170 0.97251 0.92634 0.98039 1.20823 1.04515 0.97669 1.03326 1.21169 0.93842 0.95954 0.95065 1.19828 1.08474 0.95926 1.04696 1.18472 0.81825 0.83100 0.81847 1.90652 1.56802 1.35063 1.63770 1.45799 1.43746 1.08397 1.40390 1.21313 0.90839 0.98504 0.89453 1.21688 1.00638 0.93390 0.99687 1.21348 0.99054 0.96129 0.98143 1.21470 0.99161 0.96564 0.98296 1.22262 0.98522 0.82611 0.97218 1.86421 1.65945 1.27549 1.60838 0.90538 0.89261 0.85715 0.84483 0.84599 0.75648 0.93415 0.93181 0.90247 0.90385 0.91181 0.91060 0.91529 0.91611 0.92746 0.92696 0.75321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.26 12.57 21.88 0.28 -45.99 16 2 C 0.00 -0.21 5.04 85.37 0.43 0.22 16 3 Si 1.12 47.64 29.98 68.60 2.06 49.70 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.51 -29.96 7.65 23.41 0.18 -29.78 16 8 H 0.08 4.97 5.92 -2.91 -0.02 4.96 16 9 C 0.09 5.20 5.17 -21.11 -0.11 5.09 16 10 C -0.23 -11.56 7.87 22.72 0.18 -11.38 16 11 C -0.07 -3.07 10.01 22.26 0.22 -2.85 16 12 C -0.24 -9.28 10.03 22.41 0.22 -9.05 16 13 C -0.04 -1.64 9.53 22.51 0.21 -1.43 16 14 C -0.28 -13.94 5.92 -19.70 -0.12 -14.05 16 15 C 0.55 26.28 7.73 86.67 0.67 26.95 16 16 O -0.58 -32.47 13.56 -4.06 -0.06 -32.53 16 17 N -0.73 -24.95 5.51 -466.37 -2.57 -27.51 16 18 C 0.12 3.52 5.67 86.38 0.49 4.01 16 19 C -0.12 -2.19 5.33 30.59 0.16 -2.03 16 20 C -0.11 -1.73 5.21 30.60 0.16 -1.57 16 21 C -0.12 -1.79 5.58 30.60 0.17 -1.62 16 22 C 0.07 0.97 7.05 71.98 0.51 1.48 16 23 O -0.60 -9.24 13.66 -148.98 -2.04 -11.27 16 24 H 0.28 16.46 6.55 -92.71 -0.61 15.85 16 25 H 0.09 4.78 6.94 -2.91 -0.02 4.76 16 26 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 27 H 0.14 4.09 8.06 -2.92 -0.02 4.06 16 28 H 0.14 4.04 6.41 -2.91 -0.02 4.02 16 29 H 0.41 11.15 6.51 -92.71 -0.60 10.55 16 30 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.40 2.39 9.12 -74.06 -0.68 1.72 16 Total: -1.00 -73.26 333.39 1.00 -72.26 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -0.06 Total: 31.36 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 3.38 Total: -36.01 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -2.29 Total: -73.50 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -2.09 Total: -43.80 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.06 Total: 49.70 kcal Total: -73.26 1.00 -72.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601540216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.942 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds