Wall clock time and date at job start Mon Mar 30 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46910 * 2 1 4 4 C 1.52996 * 109.46747 * 119.99843 * 2 1 3 5 5 C 1.50704 * 109.47376 * 294.99786 * 4 2 1 6 6 H 1.07997 * 119.99485 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00206 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99905 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99860 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.46963 * 89.99748 * 9 7 5 11 11 H 1.48496 * 109.46957 * 209.99704 * 9 7 5 12 12 H 1.48504 * 109.46963 * 329.99971 * 9 7 5 13 13 C 1.52999 * 109.47026 * 239.99561 * 2 1 3 14 14 N 1.46899 * 109.46821 * 174.68065 * 13 2 1 15 15 C 1.52106 * 111.11838 * 295.61367 * 14 13 2 16 16 C 1.56739 * 98.70696 * 242.44903 * 15 14 13 17 17 C 1.55979 * 107.19412 * 40.93834 * 16 15 14 18 18 C 1.50240 * 110.99723 * 184.58790 * 14 13 2 19 19 C 1.52996 * 117.57637 * 296.57989 * 18 14 13 20 20 F 1.39903 * 109.47340 * 297.30522 * 19 18 14 21 21 F 1.39901 * 109.47521 * 57.30555 * 19 18 14 22 22 F 1.39905 * 109.47268 * 177.30751 * 19 18 14 23 23 C 1.54882 * 103.48298 * 161.77178 * 18 14 13 24 24 H 1.09005 * 109.47124 * 305.13855 * 1 2 3 25 25 H 1.09003 * 109.47360 * 65.13929 * 1 2 3 26 26 H 1.09005 * 109.47203 * 185.13901 * 1 2 3 27 27 H 1.08999 * 109.47370 * 54.99977 * 4 2 1 28 28 H 1.09004 * 109.46850 * 174.99836 * 4 2 1 29 29 H 0.97000 * 119.99602 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46832 * 54.68128 * 13 2 1 31 31 H 1.09000 * 109.47269 * 294.68800 * 13 2 1 32 32 H 1.08996 * 112.02876 * 124.99536 * 15 14 13 33 33 H 1.09009 * 111.35179 * 359.64153 * 15 14 13 34 34 H 1.09001 * 118.43989 * 180.92877 * 16 15 14 35 35 H 1.09008 * 114.52050 * 54.85264 * 17 16 15 36 36 H 1.09005 * 114.52640 * 188.51974 * 17 16 15 37 37 H 1.09002 * 114.43939 * 180.92117 * 23 18 14 38 38 H 1.09000 * 114.47447 * 47.51680 * 23 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 1.6456 0.2779 4.7993 9 14 2.9647 -1.9876 3.9028 10 1 4.4179 -1.6831 3.8785 11 1 2.6175 -2.6416 5.1900 12 1 2.6309 -2.8987 2.7786 13 6 2.0400 -0.7213 -1.2492 14 7 3.5034 -0.6111 -1.3151 15 6 3.9366 0.8365 -1.4895 16 6 4.6405 0.7071 -2.8840 17 6 3.7549 -0.2295 -3.7623 18 6 4.0318 -1.2120 -2.5867 19 6 3.8211 -2.7119 -2.8023 20 9 4.4960 -3.4256 -1.8060 21 9 2.4545 -3.0046 -2.7409 22 9 4.3204 -3.0774 -4.0571 23 6 5.4510 -0.6043 -2.7107 24 1 -0.3634 0.5915 0.8404 25 1 -0.3634 0.4320 -0.9324 26 1 -0.3634 -1.0236 0.0921 27 1 1.6053 -1.7197 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 1.8929 -0.0450 5.6800 30 1 1.6009 -0.2655 -2.1366 31 1 1.7564 -1.7728 -1.2028 32 1 4.6384 1.1492 -0.7163 33 1 3.0770 1.5050 -1.5375 34 1 5.0973 1.5959 -3.3193 35 1 2.7153 0.0856 -3.8535 36 1 4.2063 -0.5203 -4.7110 37 1 5.9992 -0.9165 -3.5996 38 1 6.0436 -0.6509 -1.7970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602688494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:43 Heat of formation + Delta-G solvation = -95.552018 kcal Electronic energy + Delta-G solvation = -23260.580502 eV Core-core repulsion = 19496.961973 eV Total energy + Delta-G solvation = -3763.618528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.05342 -47.64616 -47.49008 -41.36825 -36.05747 -32.63055 -31.28066 -29.42894 -27.66041 -26.24233 -25.32178 -24.42421 -22.37066 -20.82167 -20.04678 -18.77903 -18.32314 -18.27856 -17.60245 -16.69990 -15.55767 -14.99104 -14.60062 -14.45970 -14.38489 -14.11055 -14.00391 -13.72913 -13.69643 -13.48312 -13.29107 -12.88707 -12.65019 -12.43092 -12.16032 -11.86865 -11.67402 -11.57711 -10.99752 -10.97395 -10.91377 -10.79908 -10.43081 -10.29187 -9.88211 -9.58738 -9.45504 -8.96730 -8.51211 -8.40132 -5.95272 -3.91249 2.62684 3.40377 3.44248 3.47029 3.55121 3.56413 3.81628 4.01120 4.05687 4.43266 4.53569 4.55860 4.72254 5.15135 5.27552 5.32961 5.39693 5.41074 5.51939 5.56894 5.69490 5.70562 5.81714 5.93389 5.98627 6.13524 6.19694 6.28964 6.56569 6.78955 6.87516 7.07312 7.12294 7.48773 7.62019 7.91801 8.63685 9.09980 9.69181 11.18164 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.006087 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.237671 B = 4599.043813 C = 4937.907925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 H 0.063 0.937 4 C -0.003 4.003 5 C -0.512 4.512 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.908 5.908 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.265 1.265 13 C 0.030 3.970 14 N -0.452 5.452 15 C 0.042 3.958 16 C -0.135 4.135 17 C -0.143 4.143 18 C -0.023 4.023 19 C 0.493 3.507 20 F -0.171 7.171 21 F -0.178 7.178 22 F -0.183 7.183 23 C -0.117 4.117 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.047 0.953 27 H 0.011 0.989 28 H 0.025 0.975 29 H 0.261 0.739 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.154 -1.552 -19.778 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 H 0.081 0.919 4 C -0.040 4.040 5 C -0.550 4.550 6 H 0.088 0.912 7 C -0.135 4.135 8 N -0.548 5.548 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.218 1.218 12 H -0.189 1.189 13 C -0.098 4.098 14 N -0.175 5.175 15 C -0.085 4.085 16 C -0.154 4.154 17 C -0.182 4.182 18 C -0.115 4.115 19 C 0.439 3.561 20 F -0.152 7.152 21 F -0.159 7.159 22 F -0.164 7.164 23 C -0.154 4.154 24 H 0.087 0.913 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.029 0.971 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.347 -1.887 -19.032 20.151 hybrid contribution 0.038 -0.841 -0.473 0.965 sum 6.385 -2.727 -19.505 20.704 Atomic orbital electron populations 1.21693 0.95559 1.01567 1.00216 1.21047 0.95061 0.99108 0.93950 0.91866 1.19559 0.96668 0.95430 0.92387 1.21188 1.35081 1.09387 0.89377 0.91160 1.24996 0.95691 0.96843 0.95955 1.69922 1.47550 1.39365 0.97972 0.86813 0.80736 0.84679 0.77290 1.20363 1.21756 1.18912 1.22827 0.85940 1.02528 0.98491 1.67715 1.13130 1.11358 1.25293 1.24294 1.00121 0.89421 0.94664 1.24574 0.98011 0.96559 0.96239 1.24397 1.01469 0.95771 0.96521 1.25185 1.02522 0.88775 0.95010 1.19359 0.73909 0.89313 0.73553 1.93219 1.80065 1.80539 1.61381 1.93164 1.32227 1.94668 1.95879 1.93151 1.87638 1.93036 1.42580 1.23837 0.93027 0.95165 1.03398 0.91314 0.95001 0.93398 0.97094 0.95679 0.92966 0.94945 0.90017 0.87804 0.90322 0.86417 0.90424 0.87684 0.88633 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.92 37.16 0.33 -2.11 16 2 C -0.07 -1.42 2.26 -90.62 -0.20 -1.62 16 3 H 0.06 1.23 6.61 -51.93 -0.34 0.88 16 4 C 0.00 -0.07 3.46 -27.88 -0.10 -0.17 16 5 C -0.51 -14.54 9.03 -34.44 -0.31 -14.85 16 6 H 0.07 2.12 7.30 -52.49 -0.38 1.74 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.91 -28.36 13.96 55.43 0.77 -27.58 16 9 Si 0.88 22.64 27.47 -169.99 -4.67 17.97 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 13 C 0.03 0.50 3.55 -3.83 -0.01 0.48 16 14 N -0.45 -7.04 5.08 -213.43 -1.08 -8.13 16 15 C 0.04 0.53 6.35 1.16 0.01 0.54 16 16 C -0.14 -1.31 6.35 -91.86 -0.58 -1.89 16 17 C -0.14 -1.43 7.14 -30.43 -0.22 -1.65 16 18 C -0.02 -0.30 1.17 -133.28 -0.16 -0.45 16 19 C 0.49 6.92 3.23 37.16 0.12 7.04 16 20 F -0.17 -2.71 17.32 2.25 0.04 -2.67 16 21 F -0.18 -2.68 14.80 2.25 0.03 -2.64 16 22 F -0.18 -2.27 16.98 2.25 0.04 -2.23 16 23 C -0.12 -1.23 7.27 -31.34 -0.23 -1.46 16 24 H 0.07 1.39 7.11 -51.93 -0.37 1.02 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 28 H 0.02 0.62 7.06 -51.93 -0.37 0.25 16 29 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.03 0.48 6.93 -51.93 -0.36 0.12 16 31 H 0.08 1.45 6.22 -51.93 -0.32 1.13 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.00 6.78 -51.92 -0.35 0.64 16 34 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.80 7.12 -51.92 -0.37 0.44 16 36 H 0.10 0.87 7.83 -51.93 -0.41 0.46 16 37 H 0.10 0.82 7.86 -51.93 -0.41 0.41 16 38 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -31.16 307.55 -7.02 -38.17 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -5.33 Total: -3.22 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -1.45 Total: -14.30 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.31 Total: -35.71 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 0.11 Total: -7.55 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.16 -7.02 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602688494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.380 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds