Wall clock time and date at job start Mon Mar 30 2020 01:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48504 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47785 * 300.00679 * 3 2 1 6 6 H 1.48510 * 109.46934 * 60.00701 * 3 2 1 7 7 C 1.37876 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00092 * 171.74435 * 7 2 1 9 9 C 1.50699 * 119.99889 * 351.75142 * 7 2 1 10 10 C 1.52992 * 115.55499 * 86.97640 * 9 7 2 11 11 N 1.46897 * 109.47456 * 54.27435 * 10 9 7 12 12 C 1.47014 * 110.99950 * 51.69643 * 11 10 9 13 13 C 1.53102 * 109.25580 * 182.39779 * 12 11 10 14 14 O 1.43007 * 109.25797 * 303.14722 * 13 12 11 15 15 C 1.43014 * 113.73822 * 58.67317 * 14 13 12 16 16 C 1.47012 * 111.00462 * 175.33504 * 11 10 9 17 17 H 1.09001 * 109.50314 * 297.58545 * 16 11 10 18 18 C 1.50696 * 109.50825 * 57.66835 * 16 11 10 19 19 C 1.34518 * 125.79283 * 220.00342 * 18 16 11 20 20 C 1.41379 * 106.84094 * 180.02562 * 19 18 16 21 21 C 1.34513 * 106.84331 * 359.97438 * 20 19 18 22 22 O 1.34301 * 108.42191 * 359.74011 * 21 20 19 23 23 C 1.53006 * 117.49541 * 301.30178 * 9 7 2 24 24 C 1.53007 * 117.49589 * 232.64628 * 9 7 2 25 25 H 0.97001 * 119.99852 * 183.29713 * 1 2 3 26 26 H 1.09000 * 109.47434 * 174.27391 * 10 9 7 27 27 H 1.08999 * 109.47156 * 294.27172 * 10 9 7 28 28 H 1.09003 * 109.50554 * 302.32849 * 12 11 10 29 29 H 1.08998 * 109.50695 * 62.46281 * 12 11 10 30 30 H 1.08999 * 109.50269 * 183.21868 * 13 12 11 31 31 H 1.08996 * 109.50872 * 63.08689 * 13 12 11 32 32 H 1.09001 * 109.50868 * 181.39193 * 15 14 13 33 33 H 1.09005 * 109.54046 * 61.28598 * 15 14 13 34 34 H 1.07994 * 126.57604 * 0.03385 * 19 18 16 35 35 H 1.08005 * 126.57911 * 180.02562 * 20 19 18 36 36 H 1.08003 * 125.79209 * 179.97438 * 21 20 19 37 37 H 1.08998 * 117.49813 * 0.02562 * 23 9 7 38 38 H 1.09002 * 117.49473 * 145.02385 * 23 9 7 39 39 H 1.08994 * 117.50021 * 214.97521 * 24 9 7 40 40 H 1.08997 * 117.49642 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3966 -1.2123 6 1 1.8905 2.3963 1.2127 7 6 2.0045 -1.1940 -0.0005 8 1 3.0761 -1.1989 -0.1348 9 6 1.2627 -2.4925 0.1861 10 6 0.7038 -3.1227 -1.0910 11 7 1.7849 -3.2800 -2.0731 12 6 2.9361 -3.9777 -1.4822 13 6 4.0591 -4.0668 -2.5190 14 8 3.5690 -4.7261 -3.6896 15 6 2.4480 -4.0732 -4.2914 16 6 1.3087 -3.9840 -3.2727 17 1 0.9837 -4.9882 -3.0003 18 6 0.1531 -3.2272 -3.8749 19 6 -0.9577 -3.7747 -4.4002 20 6 -1.7692 -2.7065 -4.8463 21 6 -1.1062 -1.5701 -4.5666 22 8 0.0548 -1.8912 -3.9727 23 6 0.4515 -2.6640 1.4721 24 6 1.7585 -3.4380 1.2821 25 1 -0.4850 -0.8387 0.0483 26 1 0.2793 -4.0994 -0.8585 27 1 -0.0720 -2.4785 -1.5047 28 1 3.2883 -3.4255 -0.6108 29 1 2.6379 -4.9820 -1.1814 30 1 4.8930 -4.6332 -2.1045 31 1 4.3940 -3.0629 -2.7800 32 1 2.1168 -4.6441 -5.1589 33 1 2.7356 -3.0695 -4.6046 34 1 -1.1857 -4.8281 -4.4679 35 1 -2.7365 -2.7874 -5.3201 36 1 -1.4509 -0.5689 -4.7796 37 1 0.4542 -1.8376 2.1828 38 1 -0.4801 -3.2262 1.4082 39 1 1.6861 -4.5091 1.0934 40 1 2.6214 -3.1211 1.8678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602782181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:03 Heat of formation + Delta-G solvation = 7.615500 kcal Electronic energy + Delta-G solvation = -22966.802635 eV Core-core repulsion = 19749.514527 eV Total energy + Delta-G solvation = -3217.288109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.22600 -39.33367 -37.13782 -34.68278 -32.71310 -31.83908 -31.59959 -28.69169 -27.64947 -25.04178 -23.82786 -23.75330 -21.55476 -21.31931 -20.60068 -19.61127 -19.21991 -17.22102 -16.64543 -16.09295 -15.73693 -15.25578 -14.82850 -14.63177 -14.33094 -14.07959 -13.69740 -13.37439 -13.13707 -12.63199 -12.48287 -12.39996 -12.10748 -11.94619 -11.59592 -11.16657 -11.04840 -10.72964 -10.71072 -10.46364 -10.33421 -10.07752 -9.65956 -9.57560 -9.33939 -8.46650 -8.40950 -8.22522 -8.09368 -7.67487 -6.23722 -3.92964 2.09088 2.89008 3.36785 3.48314 3.51848 3.64656 4.04910 4.21855 4.59267 4.92502 5.08633 5.14318 5.25401 5.33622 5.38111 5.40501 5.46422 5.52638 5.64464 5.84585 5.90531 5.99119 6.04171 6.08268 6.14290 6.23210 6.29974 6.33828 6.36972 6.40670 6.53299 6.72502 6.77928 6.87644 7.22191 7.25047 7.30414 7.51444 7.62362 7.77383 8.35774 8.53805 8.98873 9.78717 11.16331 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013580 B = 0.008289 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.304972 B = 3377.220637 C = 4139.467980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.029 3.971 3 Si 1.069 2.931 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.030 3.970 10 C 0.102 3.898 11 N -0.498 5.498 12 C 0.024 3.976 13 C 0.060 3.940 14 O -0.388 6.388 15 C 0.075 3.925 16 C 0.124 3.876 17 H 0.066 0.934 18 C 0.012 3.988 19 C -0.220 4.220 20 C -0.224 4.224 21 C -0.034 4.034 22 O -0.142 6.142 23 C -0.179 4.179 24 C -0.203 4.203 25 H 0.272 0.728 26 H 0.000 1.000 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.028 0.972 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.198 0.802 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 -7.447 -7.705 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.899 3.101 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.029 3.971 10 C -0.025 4.025 11 N -0.223 5.223 12 C -0.104 4.104 13 C -0.017 4.017 14 O -0.306 6.306 15 C -0.002 4.002 16 C 0.015 3.985 17 H 0.084 0.916 18 C -0.039 4.039 19 C -0.240 4.240 20 C -0.243 4.243 21 C -0.103 4.103 22 O -0.036 6.036 23 C -0.217 4.217 24 C -0.240 4.240 25 H 0.083 0.917 26 H 0.018 0.982 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.046 0.954 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.215 0.785 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.444 -5.287 -7.858 9.580 hybrid contribution -0.732 -2.344 0.423 2.492 sum 0.712 -7.631 -7.435 10.678 Atomic orbital electron populations 1.70669 1.06807 1.31174 1.45728 1.25607 0.96517 1.01967 0.93569 0.83539 0.74608 0.75312 0.76636 1.21651 1.21605 1.21730 1.21060 0.94176 0.89228 1.54053 0.92996 1.19106 0.97768 0.95454 0.84728 1.21793 0.91990 0.95862 0.92892 1.62125 1.07742 1.47022 1.05417 1.22833 0.91852 0.96754 0.98920 1.22785 0.95865 0.97948 0.85063 1.87922 1.47409 1.52401 1.42911 1.22618 0.84997 0.98586 0.93992 1.20843 0.90912 0.93670 0.93107 0.91625 1.22044 0.97787 0.81179 1.02940 1.21472 0.95134 1.00150 1.07226 1.21681 1.02102 0.92205 1.08324 1.24085 0.85876 1.00250 1.00065 1.84235 1.35963 1.23201 1.60179 1.22771 0.92806 1.01925 1.04174 1.23002 0.98081 0.95368 1.07577 0.91655 0.98217 0.90841 0.87248 0.95424 0.88849 0.91920 0.88688 0.91770 0.84071 0.83909 0.78506 0.89637 0.91878 0.91956 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.61 13.54 55.43 0.75 -25.86 16 2 C 0.03 0.79 5.36 -17.82 -0.10 0.70 16 3 Si 1.07 25.30 29.91 -169.99 -5.08 20.22 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.55 -14.63 8.02 -34.44 -0.28 -14.91 16 8 H 0.05 1.42 7.60 -52.49 -0.40 1.02 16 9 C 0.03 0.72 0.20 -155.66 -0.03 0.69 16 10 C 0.10 2.28 4.59 -3.83 -0.02 2.26 16 11 N -0.50 -10.05 4.32 -227.74 -0.98 -11.04 16 12 C 0.02 0.44 4.80 -3.71 -0.02 0.42 16 13 C 0.06 0.94 7.01 37.21 0.26 1.20 16 14 O -0.39 -6.23 10.83 -35.23 -0.38 -6.61 16 15 C 0.08 1.17 6.27 37.21 0.23 1.40 16 16 C 0.12 2.15 2.44 -68.76 -0.17 1.98 16 17 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 18 C 0.01 0.22 4.75 -35.63 -0.17 0.05 16 19 C -0.22 -3.45 10.80 -39.70 -0.43 -3.88 16 20 C -0.22 -3.33 10.91 -39.70 -0.43 -3.76 16 21 C -0.03 -0.55 12.09 29.42 0.36 -0.19 16 22 O -0.14 -2.82 10.26 5.69 0.06 -2.76 16 23 C -0.18 -4.10 8.67 -26.69 -0.23 -4.33 16 24 C -0.20 -4.28 8.23 -26.69 -0.22 -4.50 16 25 H 0.27 7.97 6.18 -40.82 -0.25 7.72 16 26 H 0.00 0.00 8.08 -51.93 -0.42 -0.42 16 27 H 0.07 1.86 6.55 -51.93 -0.34 1.52 16 28 H 0.11 2.17 5.34 -51.93 -0.28 1.89 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 35 H 0.14 1.71 8.06 -52.48 -0.42 1.28 16 36 H 0.20 2.55 8.06 -52.48 -0.42 2.12 16 37 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -30.22 323.66 -7.98 -38.21 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.98 Total: 5.83 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -1.24 Total: -22.86 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.23 Total: -36.90 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.32 Total: -9.37 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.22 -7.98 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602782181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.822 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds