Wall clock time and date at job start Mon Mar 30 2020 01:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48504 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47785 * 300.00679 * 3 2 1 6 6 H 1.48510 * 109.46934 * 60.00701 * 3 2 1 7 7 C 1.37876 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00092 * 171.74435 * 7 2 1 9 9 C 1.50699 * 119.99889 * 351.75142 * 7 2 1 10 10 C 1.52992 * 115.55499 * 86.97640 * 9 7 2 11 11 N 1.46897 * 109.47456 * 54.27435 * 10 9 7 12 12 C 1.47014 * 110.99950 * 51.69643 * 11 10 9 13 13 C 1.53102 * 109.25580 * 182.39779 * 12 11 10 14 14 O 1.43007 * 109.25797 * 303.14722 * 13 12 11 15 15 C 1.43014 * 113.73822 * 58.67317 * 14 13 12 16 16 C 1.47012 * 111.00462 * 175.33504 * 11 10 9 17 17 H 1.09001 * 109.50314 * 297.58545 * 16 11 10 18 18 C 1.50696 * 109.50825 * 57.66835 * 16 11 10 19 19 C 1.34518 * 125.79283 * 220.00342 * 18 16 11 20 20 C 1.41379 * 106.84094 * 180.02562 * 19 18 16 21 21 C 1.34513 * 106.84331 * 359.97438 * 20 19 18 22 22 O 1.34301 * 108.42191 * 359.74011 * 21 20 19 23 23 C 1.53006 * 117.49541 * 301.30178 * 9 7 2 24 24 C 1.53007 * 117.49589 * 232.64628 * 9 7 2 25 25 H 0.97001 * 119.99852 * 183.29713 * 1 2 3 26 26 H 1.09000 * 109.47434 * 174.27391 * 10 9 7 27 27 H 1.08999 * 109.47156 * 294.27172 * 10 9 7 28 28 H 1.09003 * 109.50554 * 302.32849 * 12 11 10 29 29 H 1.08998 * 109.50695 * 62.46281 * 12 11 10 30 30 H 1.08999 * 109.50269 * 183.21868 * 13 12 11 31 31 H 1.08996 * 109.50872 * 63.08689 * 13 12 11 32 32 H 1.09001 * 109.50868 * 181.39193 * 15 14 13 33 33 H 1.09005 * 109.54046 * 61.28598 * 15 14 13 34 34 H 1.07994 * 126.57604 * 0.03385 * 19 18 16 35 35 H 1.08005 * 126.57911 * 180.02562 * 20 19 18 36 36 H 1.08003 * 125.79209 * 179.97438 * 21 20 19 37 37 H 1.08998 * 117.49813 * 0.02562 * 23 9 7 38 38 H 1.09002 * 117.49473 * 145.02385 * 23 9 7 39 39 H 1.08994 * 117.50021 * 214.97521 * 24 9 7 40 40 H 1.08997 * 117.49642 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3966 -1.2123 6 1 1.8905 2.3963 1.2127 7 6 2.0045 -1.1940 -0.0005 8 1 3.0761 -1.1989 -0.1348 9 6 1.2627 -2.4925 0.1861 10 6 0.7038 -3.1227 -1.0910 11 7 1.7849 -3.2800 -2.0731 12 6 2.9361 -3.9777 -1.4822 13 6 4.0591 -4.0668 -2.5190 14 8 3.5690 -4.7261 -3.6896 15 6 2.4480 -4.0732 -4.2914 16 6 1.3087 -3.9840 -3.2727 17 1 0.9837 -4.9882 -3.0003 18 6 0.1531 -3.2272 -3.8749 19 6 -0.9577 -3.7747 -4.4002 20 6 -1.7692 -2.7065 -4.8463 21 6 -1.1062 -1.5701 -4.5666 22 8 0.0548 -1.8912 -3.9727 23 6 0.4515 -2.6640 1.4721 24 6 1.7585 -3.4380 1.2821 25 1 -0.4850 -0.8387 0.0483 26 1 0.2793 -4.0994 -0.8585 27 1 -0.0720 -2.4785 -1.5047 28 1 3.2883 -3.4255 -0.6108 29 1 2.6379 -4.9820 -1.1814 30 1 4.8930 -4.6332 -2.1045 31 1 4.3940 -3.0629 -2.7800 32 1 2.1168 -4.6441 -5.1589 33 1 2.7356 -3.0695 -4.6046 34 1 -1.1857 -4.8281 -4.4679 35 1 -2.7365 -2.7874 -5.3201 36 1 -1.4509 -0.5689 -4.7796 37 1 0.4542 -1.8376 2.1828 38 1 -0.4801 -3.2262 1.4082 39 1 1.6861 -4.5091 1.0934 40 1 2.6214 -3.1211 1.8678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602782181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:03 Heat of formation + Delta-G solvation = -11.260141 kcal Electronic energy + Delta-G solvation = -22967.621145 eV Core-core repulsion = 19749.514527 eV Total energy + Delta-G solvation = -3218.106618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.51039 -40.74631 -38.81735 -36.17232 -34.03033 -33.81764 -32.97671 -30.09056 -29.02159 -27.04942 -25.38000 -25.15400 -23.15293 -22.71577 -21.96043 -21.21185 -20.85471 -18.69211 -18.32476 -17.44364 -17.14391 -16.57756 -16.22984 -15.97823 -15.81703 -15.75560 -15.61426 -14.82858 -14.65540 -14.37905 -14.02373 -13.66772 -13.55382 -13.36955 -13.06058 -12.75713 -12.63684 -12.58251 -12.30542 -12.22473 -11.93475 -11.68786 -11.30715 -10.89782 -10.73792 -10.40626 -10.33308 -10.21148 -9.37227 -9.19736 -8.41599 -6.09580 0.81185 1.54418 1.62515 1.69801 1.77323 2.13985 2.62400 2.76686 2.84281 3.29615 3.36632 3.68485 3.79813 3.98576 4.00819 4.16860 4.18631 4.22042 4.25090 4.32810 4.37741 4.48532 4.49895 4.66758 4.70834 4.78447 4.81134 4.87637 4.96012 4.98607 5.00309 5.10123 5.18335 5.40661 5.48172 5.62321 6.00944 6.03646 6.15352 6.31231 6.36865 6.40647 6.83867 7.67372 8.98876 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013580 B = 0.008289 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.304972 B = 3377.220637 C = 4139.467980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.019 4.019 3 Si 1.107 2.893 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.544 4.544 8 H 0.041 0.959 9 C 0.008 3.992 10 C 0.121 3.879 11 N -0.519 5.519 12 C 0.027 3.973 13 C 0.065 3.935 14 O -0.387 6.387 15 C 0.080 3.920 16 C 0.125 3.875 17 H 0.076 0.924 18 C -0.016 4.016 19 C -0.214 4.214 20 C -0.218 4.218 21 C -0.055 4.055 22 O -0.182 6.182 23 C -0.186 4.186 24 C -0.172 4.172 25 H 0.261 0.739 26 H 0.007 0.993 27 H 0.037 0.963 28 H 0.089 0.911 29 H 0.037 0.963 30 H 0.125 0.875 31 H 0.051 0.949 32 H 0.124 0.876 33 H 0.050 0.950 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.219 0.781 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -8.974 -8.501 12.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.219 4.219 3 Si 0.932 3.068 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.582 4.582 8 H 0.059 0.941 9 C 0.007 3.993 10 C -0.006 4.006 11 N -0.244 5.244 12 C -0.101 4.101 13 C -0.011 4.011 14 O -0.306 6.306 15 C 0.003 3.997 16 C 0.016 3.984 17 H 0.094 0.906 18 C -0.067 4.067 19 C -0.233 4.233 20 C -0.236 4.236 21 C -0.123 4.123 22 O -0.078 6.078 23 C -0.224 4.224 24 C -0.209 4.209 25 H 0.072 0.928 26 H 0.025 0.975 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.055 0.945 30 H 0.143 0.857 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.068 0.932 34 H 0.185 0.815 35 H 0.192 0.808 36 H 0.235 0.765 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.920 -6.837 -8.655 11.195 hybrid contribution -0.893 -1.907 0.648 2.203 sum 1.027 -8.744 -8.007 11.901 Atomic orbital electron populations 1.70771 1.07622 1.30523 1.48349 1.26726 0.96637 1.05134 0.93381 0.83039 0.74530 0.72534 0.76657 1.19983 1.21668 1.21126 1.21258 0.93759 0.90676 1.52522 0.94097 1.19121 0.98792 0.95553 0.85849 1.21390 0.91819 0.95066 0.92370 1.62013 1.07693 1.48901 1.05825 1.22806 0.91821 0.96458 0.99007 1.22818 0.95733 0.98133 0.84463 1.87928 1.47477 1.52349 1.42815 1.22673 0.84250 0.98473 0.94282 1.20946 0.91639 0.93641 0.92163 0.90647 1.22298 0.98988 0.80864 1.04513 1.21860 0.94159 1.01572 1.05751 1.22080 1.02920 0.91298 1.07347 1.24716 0.85381 1.02016 1.00170 1.84185 1.37691 1.24468 1.61416 1.22694 0.94355 1.01998 1.03362 1.22965 0.96768 0.96204 1.04956 0.92838 0.97496 0.94464 0.89256 0.94490 0.85701 0.93040 0.85781 0.93186 0.81528 0.80794 0.76484 0.91971 0.90747 0.89395 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.24 13.54 21.45 0.29 -55.95 16 2 C -0.02 -1.09 5.36 84.65 0.45 -0.64 16 3 Si 1.11 51.55 29.91 68.60 2.05 53.60 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.54 -29.48 8.02 25.60 0.21 -29.27 16 8 H 0.04 2.26 7.60 -2.91 -0.02 2.23 16 9 C 0.01 0.36 0.20 -52.93 -0.01 0.35 16 10 C 0.12 5.46 4.59 86.30 0.40 5.85 16 11 N -0.52 -20.78 4.32 -874.42 -3.78 -24.55 16 12 C 0.03 0.93 4.80 86.32 0.41 1.34 16 13 C 0.07 1.92 7.01 72.02 0.50 2.43 16 14 O -0.39 -11.54 10.83 -148.98 -1.61 -13.16 16 15 C 0.08 2.36 6.27 72.01 0.45 2.81 16 16 C 0.12 4.20 2.44 44.18 0.11 4.31 16 17 H 0.08 2.37 8.13 -2.39 -0.02 2.35 16 18 C -0.02 -0.55 4.75 24.83 0.12 -0.44 16 19 C -0.21 -6.33 10.80 22.19 0.24 -6.09 16 20 C -0.22 -6.09 10.91 22.19 0.24 -5.85 16 21 C -0.06 -1.77 12.09 66.97 0.81 -0.96 16 22 O -0.18 -7.36 10.26 -2.56 -0.03 -7.38 16 23 C -0.19 -8.56 8.67 30.62 0.27 -8.29 16 24 C -0.17 -7.02 8.23 30.62 0.25 -6.77 16 25 H 0.26 15.85 6.18 -92.71 -0.57 15.28 16 26 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16 27 H 0.04 1.94 6.55 -2.39 -0.02 1.92 16 28 H 0.09 3.47 5.34 -2.39 -0.01 3.45 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.13 2.88 8.14 -2.39 -0.02 2.87 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 36 H 0.22 5.59 8.06 -2.91 -0.02 5.56 16 37 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -65.96 323.66 2.59 -63.37 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 1.21 Total: 25.28 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 4.45 Total: -41.21 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -3.49 Total: -80.50 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.64 Total: -20.54 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Total: -65.96 2.59 -63.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602782181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.108 kcal (2) G-P(sol) polarization free energy of solvation -65.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds