Wall clock time and date at job start Mon Mar 30 2020 02:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 116.99967 * 2 1 4 4 O 1.20831 * 119.99696 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00086 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47265 * 300.00118 * 5 3 2 7 7 N 1.46900 * 109.47270 * 180.02562 * 5 3 2 8 8 C 1.46895 * 111.00150 * 84.99991 * 7 5 3 9 9 H 1.09004 * 109.47444 * 324.99871 * 8 7 5 10 10 C 1.53003 * 109.47429 * 85.00140 * 8 7 5 11 11 C 1.50704 * 109.47284 * 205.00413 * 8 7 5 12 12 H 1.08000 * 119.99881 * 334.64613 * 11 8 7 13 13 C 1.37878 * 120.00261 * 154.65085 * 11 8 7 14 14 N 1.31516 * 119.99916 * 6.43934 * 13 11 8 15 15 Si 1.86791 * 120.00025 * 186.43765 * 13 11 8 16 16 H 1.48502 * 109.47032 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.47472 * 299.99991 * 15 13 11 18 18 H 1.48504 * 109.47308 * 60.00064 * 15 13 11 19 19 C 1.50695 * 109.47325 * 60.00273 * 5 3 2 20 20 C 1.38255 * 120.00227 * 99.99825 * 19 5 3 21 21 C 1.38211 * 120.00219 * 180.02562 * 20 19 5 22 22 C 1.38263 * 119.99910 * 359.97156 * 21 20 19 23 23 C 1.38210 * 119.99952 * 359.95940 * 22 21 20 24 24 C 1.38221 * 119.99902 * 279.73078 * 19 5 3 25 25 C 1.50697 * 119.99913 * 359.97438 * 24 19 5 26 26 H 1.09002 * 109.47163 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46985 * 299.99608 * 1 2 3 28 28 H 1.08997 * 109.47535 * 59.99643 * 1 2 3 29 29 H 1.00895 * 111.00062 * 208.95976 * 7 5 3 30 30 H 1.09004 * 109.46569 * 55.07806 * 10 8 7 31 31 H 1.08991 * 109.47102 * 175.08208 * 10 8 7 32 32 H 1.09002 * 109.46619 * 295.08197 * 10 8 7 33 33 H 0.97003 * 119.99940 * 355.08024 * 14 13 11 34 34 H 1.07996 * 119.99801 * 359.97438 * 20 19 5 35 35 H 1.07999 * 119.99823 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.00014 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.99693 * 180.02562 * 23 22 21 38 38 H 1.08998 * 109.46928 * 90.00349 * 25 24 19 39 39 H 1.08996 * 109.46934 * 210.00337 * 25 24 19 40 40 H 1.08998 * 109.47236 * 330.00911 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9564 0.7806 0.8891 7 7 3.9828 2.6836 0.0002 8 6 4.0180 3.2215 1.3666 9 1 3.2156 2.7747 1.9538 10 6 5.3660 2.8908 2.0104 11 6 3.8355 4.7168 1.3228 12 1 4.1091 5.2684 0.4355 13 6 3.3194 5.3807 2.4155 14 7 3.1050 4.7310 3.5387 15 14 2.9249 7.2028 2.3006 16 1 2.3866 7.6757 3.6013 17 1 4.1613 7.9574 1.9735 18 1 1.9137 7.4242 1.2358 19 6 4.1046 0.5921 -1.2314 20 6 4.4918 1.3436 -2.3253 21 6 4.9851 0.7174 -3.4544 22 6 5.0919 -0.6607 -3.4896 23 6 4.7062 -1.4119 -2.3954 24 6 4.2165 -0.7851 -1.2645 25 6 3.8006 -1.6039 -0.0696 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 4.8754 2.7970 -0.4562 30 1 6.1718 3.2625 1.3772 31 1 5.4264 3.3638 2.9905 32 1 5.4602 1.8106 2.1218 33 1 3.2421 3.7715 3.5778 34 1 4.4081 2.4200 -2.2980 35 1 5.2872 1.3044 -4.3090 36 1 5.4770 -1.1501 -4.3720 37 1 4.7900 -2.4883 -2.4228 38 1 2.7474 -1.8696 -0.1601 39 1 4.4019 -2.5119 -0.0244 40 1 3.9517 -1.0222 0.8397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:43 Heat of formation + Delta-G solvation = -56.812540 kcal Electronic energy + Delta-G solvation = -22300.488856 eV Core-core repulsion = 19080.406938 eV Total energy + Delta-G solvation = -3220.081918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.40380 -39.09112 -36.64312 -35.52025 -33.44554 -32.60105 -30.96002 -28.63777 -27.68696 -26.73148 -25.48075 -24.51115 -22.07061 -21.63979 -20.40941 -19.89882 -17.38697 -17.11264 -16.32104 -16.16160 -15.75376 -15.38267 -14.79453 -14.13441 -13.89742 -13.67496 -13.59298 -13.30944 -12.99688 -12.77715 -12.53457 -12.26296 -12.17388 -12.03473 -11.75078 -11.53683 -11.28214 -11.03171 -10.85581 -10.74822 -10.63766 -10.40622 -10.10232 -10.00910 -9.86814 -8.72674 -8.61412 -8.47540 -8.30065 -7.49152 -6.28597 -3.95648 1.35420 1.47863 2.79047 3.04162 3.49480 3.55531 3.71719 3.85054 4.57110 4.75151 4.85531 4.99067 5.02825 5.16419 5.25525 5.29901 5.36878 5.39715 5.46061 5.57906 5.64009 5.71508 5.81357 5.86575 5.93587 6.10004 6.29289 6.30598 6.42377 6.52851 6.58365 6.67444 6.70763 6.77909 6.92101 7.07824 7.22770 7.75055 8.23798 8.30224 8.39293 8.61268 8.94864 9.73039 11.10316 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.005699 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.673405 B = 4912.009643 C = 5482.863674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.460 3.540 4 O -0.461 6.461 5 C 0.139 3.861 6 H 0.082 0.918 7 N -0.655 5.655 8 C 0.199 3.801 9 H 0.036 0.964 10 C -0.170 4.170 11 C -0.565 4.565 12 H 0.053 0.947 13 C 0.018 3.982 14 N -0.915 5.915 15 Si 1.071 2.929 16 H -0.285 1.285 17 H -0.289 1.289 18 H -0.288 1.288 19 C -0.090 4.090 20 C -0.094 4.094 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.063 4.063 25 C -0.118 4.118 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.340 0.660 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.014 0.986 33 H 0.265 0.735 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -14.312 -10.452 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.343 6.343 5 C 0.028 3.972 6 H 0.099 0.901 7 N -0.289 5.289 8 C 0.092 3.908 9 H 0.054 0.946 10 C -0.230 4.230 11 C -0.604 4.604 12 H 0.072 0.928 13 C -0.186 4.186 14 N -0.553 5.553 15 Si 0.900 3.100 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.214 1.214 19 C -0.091 4.091 20 C -0.112 4.112 21 C -0.149 4.149 22 C -0.134 4.134 23 C -0.146 4.146 24 C -0.063 4.063 25 C -0.175 4.175 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.156 0.844 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.196 -12.424 -9.685 15.754 hybrid contribution 1.087 -1.702 -0.587 2.103 sum 1.283 -14.126 -10.272 17.512 Atomic orbital electron populations 1.23138 0.77546 1.02797 1.02397 1.86523 1.22443 1.34158 1.85165 1.23714 0.91604 0.81283 0.73570 1.90724 1.65920 1.35913 1.41775 1.19820 0.87884 0.93132 0.96408 0.90070 1.60586 1.34936 1.10459 1.22917 1.19434 0.91918 0.96622 0.82844 0.94595 1.22623 1.01102 0.96786 1.02485 1.21727 1.45087 0.90705 1.02846 0.92841 1.25777 0.93791 1.06784 0.92213 1.70825 1.48187 1.10245 1.25995 0.83511 0.76472 0.74275 0.75744 1.21011 1.21596 1.21419 1.19545 1.01127 0.93047 0.95367 1.21226 0.96692 1.01147 0.92174 1.21115 1.00857 0.94664 0.98229 1.21122 0.99921 0.94175 0.98224 1.20933 1.00924 0.99511 0.93218 1.19770 0.97472 0.92990 0.96108 1.20900 1.02352 0.98776 0.95429 0.88724 0.92138 0.92358 0.83919 0.94033 0.92217 0.96701 0.92371 0.84396 0.86069 0.86350 0.86186 0.89724 0.91949 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.54 16 2 O -0.37 -5.95 7.85 -39.26 -0.31 -6.26 16 3 C 0.46 9.22 6.99 36.00 0.25 9.47 16 4 O -0.46 -11.22 16.02 -18.75 -0.30 -11.52 16 5 C 0.14 2.60 2.04 -70.02 -0.14 2.46 16 6 H 0.08 1.49 5.41 -51.93 -0.28 1.21 16 7 N -0.66 -14.15 4.87 -103.40 -0.50 -14.66 16 8 C 0.20 5.01 1.84 -68.86 -0.13 4.88 16 9 H 0.04 1.01 6.45 -51.93 -0.34 0.68 16 10 C -0.17 -3.84 9.03 37.16 0.34 -3.50 16 11 C -0.56 -16.12 8.64 -34.44 -0.30 -16.42 16 12 H 0.05 1.54 7.82 -52.49 -0.41 1.13 16 13 C 0.02 0.52 5.45 -17.82 -0.10 0.42 16 14 N -0.92 -28.02 13.63 55.43 0.76 -27.26 16 15 Si 1.07 26.17 29.91 -169.99 -5.08 21.08 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 C -0.09 -1.43 4.95 -104.62 -0.52 -1.95 16 20 C -0.09 -1.42 8.87 -39.58 -0.35 -1.77 16 21 C -0.13 -1.64 10.05 -39.58 -0.40 -2.03 16 22 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 23 C -0.13 -1.51 9.70 -39.58 -0.38 -1.89 16 24 C -0.06 -0.86 5.75 -104.62 -0.60 -1.46 16 25 C -0.12 -1.41 8.56 36.00 0.31 -1.10 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.34 6.70 6.66 -39.29 -0.26 6.44 16 30 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 31 H 0.06 1.46 7.82 -51.93 -0.41 1.05 16 32 H 0.01 0.28 7.49 -51.93 -0.39 -0.11 16 33 H 0.27 8.07 6.38 -40.82 -0.26 7.81 16 34 H 0.14 2.19 6.71 -52.49 -0.35 1.84 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 38 H 0.08 0.99 6.78 -51.93 -0.35 0.64 16 39 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.07 0.86 6.12 -51.93 -0.32 0.54 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -33.43 328.41 -7.38 -40.81 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.53 Total: 5.94 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.35 Total: -13.08 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.25 Total: -41.92 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.61 Total: -17.77 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.08 Total: 21.08 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.43 -7.38 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.007 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds