Wall clock time and date at job start Mon Mar 30 2020 01:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86794 * 120.00343 * 2 1 4 4 H 1.48499 * 109.47307 * 240.00261 * 3 2 1 5 5 H 1.48505 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47296 * 120.00191 * 3 2 1 7 7 C 1.38959 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99756 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99645 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99470 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00166 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99759 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.47063 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47157 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47497 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47501 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47322 * 179.97438 * 16 15 14 18 18 C 1.38269 * 119.94432 * 89.99694 * 17 16 15 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38143 * 119.94306 * 359.42517 * 22 20 19 24 24 H 0.97001 * 119.99893 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00295 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.47005 * 59.99782 * 12 10 9 27 27 H 1.09008 * 109.47207 * 299.99731 * 12 10 9 28 28 H 1.08997 * 109.47384 * 60.00019 * 13 12 10 29 29 H 1.08997 * 109.47329 * 299.99762 * 13 12 10 30 30 H 1.09000 * 109.47274 * 59.99916 * 14 13 12 31 31 H 1.08999 * 109.47493 * 300.00151 * 14 13 12 32 32 H 1.09000 * 109.46925 * 59.99705 * 15 14 13 33 33 H 1.09008 * 109.46725 * 300.00258 * 15 14 13 34 34 H 1.08997 * 109.47096 * 59.99673 * 16 15 14 35 35 H 1.09005 * 109.46515 * 299.99725 * 16 15 14 36 36 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 37 37 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 38 38 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 39 39 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 40 40 H 1.08005 * 119.97511 * 180.27480 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 6 2.2378 -6.0259 -0.0027 14 6 1.4727 -7.3509 -0.0027 15 6 2.4669 -8.5139 -0.0038 16 6 1.7019 -9.8389 -0.0044 17 6 2.6811 -10.9844 -0.0062 18 6 3.1305 -11.5100 1.1911 19 6 4.0285 -12.5597 1.1923 20 6 4.4791 -13.0868 -0.0094 21 8 5.3621 -14.1198 -0.0109 22 6 4.0306 -12.5542 -1.2093 23 6 3.1279 -11.5086 -1.2050 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3907 -0.0016 26 1 0.6172 -4.9204 -0.8924 27 1 0.6165 -4.9209 0.8876 28 1 2.8644 -5.9686 0.8873 29 1 2.8644 -5.9678 -0.8926 30 1 0.8457 -7.4085 -0.8924 31 1 0.8463 -7.4088 0.8875 32 1 3.0942 -8.4565 0.8857 33 1 3.0929 -8.4558 -0.8943 34 1 1.0748 -9.8960 -0.8941 35 1 1.0756 -9.8971 0.8859 36 1 2.7791 -11.0995 2.1263 37 1 4.3796 -12.9697 2.1277 38 1 4.9462 -14.9928 -0.0113 39 1 4.3833 -12.9599 -2.1460 40 1 2.7750 -11.0965 -2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611141577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:34 Heat of formation + Delta-G solvation = -92.570364 kcal Electronic energy + Delta-G solvation = -19623.102169 eV Core-core repulsion = 16401.469676 eV Total energy + Delta-G solvation = -3221.632494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05749 -38.26450 -37.49466 -35.59560 -33.93392 -32.56214 -31.27245 -31.17398 -29.51371 -26.54327 -24.69790 -23.09186 -22.79104 -21.12418 -20.81232 -18.96620 -18.71891 -17.77232 -16.26154 -16.17436 -15.74794 -15.45419 -15.44719 -14.51572 -14.21583 -14.14561 -14.00024 -13.70370 -13.45519 -12.88506 -12.83559 -12.29162 -12.25958 -12.11032 -11.56713 -11.53896 -11.44482 -11.03761 -10.78679 -10.74890 -10.65639 -10.63120 -10.41348 -10.21622 -10.16488 -9.47589 -9.27178 -8.70571 -8.32948 -7.93638 -6.38859 -3.79587 0.94085 1.07096 3.21874 3.27024 3.31795 3.32794 3.90640 3.97074 4.20013 4.52498 4.54973 4.69660 4.89549 4.94181 5.10566 5.21522 5.22743 5.28886 5.29291 5.45567 5.51332 5.67626 5.71326 5.78851 5.83868 5.90293 6.02220 6.06580 6.13327 6.14221 6.16871 6.30239 6.39851 6.54117 6.56925 6.65563 6.79067 7.32388 7.57546 8.09356 8.64793 9.20746 9.59043 10.10912 10.78869 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050628 B = 0.002095 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.917582 B =13362.034889 C =13588.252526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.439 3.561 11 O -0.598 6.598 12 C -0.130 4.130 13 C -0.098 4.098 14 C -0.120 4.120 15 C -0.113 4.113 16 C -0.082 4.082 17 C -0.084 4.084 18 C -0.102 4.102 19 C -0.143 4.143 20 C 0.093 3.907 21 O -0.501 6.501 22 C -0.143 4.143 23 C -0.102 4.102 24 H 0.272 0.728 25 H 0.393 0.607 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.388 0.612 39 H 0.127 0.873 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 -25.828 -0.017 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.119 0.881 9 N -0.201 5.201 10 C 0.225 3.775 11 O -0.484 6.484 12 C -0.171 4.171 13 C -0.136 4.136 14 C -0.157 4.157 15 C -0.151 4.151 16 C -0.119 4.119 17 C -0.084 4.084 18 C -0.120 4.120 19 C -0.162 4.162 20 C 0.049 3.951 21 O -0.311 6.311 22 C -0.161 4.161 23 C -0.120 4.120 24 H 0.081 0.919 25 H 0.226 0.774 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.243 0.757 39 H 0.145 0.855 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.490 -25.198 -0.017 25.242 hybrid contribution -0.509 0.477 0.000 0.697 sum 0.981 -24.722 -0.017 24.741 Atomic orbital electron populations 1.69606 1.05919 1.28200 1.50659 1.25268 0.95645 0.99720 0.97384 0.85920 0.78758 0.80491 0.79053 1.19922 1.20979 1.19927 1.19680 0.93354 0.82452 1.47604 0.88053 1.41934 1.09216 1.04747 1.64164 1.20068 0.88325 0.85184 0.83909 1.90503 1.14157 1.87540 1.56225 1.21496 0.98935 0.94150 1.02523 1.21240 0.97460 0.91630 1.03238 1.21652 0.97986 0.94263 1.01820 1.21587 0.98264 0.92584 1.02660 1.20676 0.96152 0.92054 1.03055 1.20044 0.98374 0.97021 0.92961 1.20984 0.97028 0.95905 0.98056 1.21421 0.98237 0.98718 0.97784 1.18485 0.92256 0.91925 0.92454 1.84841 1.33400 1.16294 1.96548 1.21418 0.98175 0.98751 0.97799 1.20985 0.96989 0.95965 0.98038 0.91858 0.77404 0.90698 0.90691 0.91615 0.91609 0.92110 0.92102 0.91757 0.91764 0.90880 0.90878 0.85507 0.85538 0.75698 0.85537 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.60 9.68 -14.93 -0.14 -8.75 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.73 5.29 -10.96 -0.06 -14.79 16 10 C 0.44 10.65 7.78 -10.99 -0.09 10.56 16 11 O -0.60 -16.68 15.56 5.55 0.09 -16.60 16 12 C -0.13 -2.30 5.70 -27.89 -0.16 -2.46 16 13 C -0.10 -1.54 4.50 -26.73 -0.12 -1.66 16 14 C -0.12 -1.38 5.21 -26.73 -0.14 -1.52 16 15 C -0.11 -1.19 5.20 -26.73 -0.14 -1.33 16 16 C -0.08 -0.71 5.34 -27.89 -0.15 -0.86 16 17 C -0.08 -0.78 5.13 -104.60 -0.54 -1.31 16 18 C -0.10 -0.91 9.69 -39.61 -0.38 -1.30 16 19 C -0.14 -1.28 9.99 -39.43 -0.39 -1.68 16 20 C 0.09 0.86 6.71 -39.21 -0.26 0.60 16 21 O -0.50 -4.14 13.50 -19.41 -0.26 -4.40 16 22 C -0.14 -1.28 9.99 -39.43 -0.39 -1.68 16 23 C -0.10 -0.91 9.69 -39.61 -0.38 -1.30 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 28 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 29 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 34 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.39 1.24 9.06 45.56 0.41 1.65 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -33.35 344.27 -8.06 -41.41 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.33 Total: 9.24 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -3.39 Total: -12.19 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.67 Total: -39.00 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.18 Total: -21.00 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.35 -8.06 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611141577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.160 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds