Wall clock time and date at job start Mon Mar 30 2020 01:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86794 * 120.00343 * 2 1 4 4 H 1.48499 * 109.47307 * 240.00261 * 3 2 1 5 5 H 1.48505 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47296 * 120.00191 * 3 2 1 7 7 C 1.38959 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99756 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99645 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99470 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00166 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99759 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.47063 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47157 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47497 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47501 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47322 * 179.97438 * 16 15 14 18 18 C 1.38269 * 119.94432 * 89.99694 * 17 16 15 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38143 * 119.94306 * 359.42517 * 22 20 19 24 24 H 0.97001 * 119.99893 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00295 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.47005 * 59.99782 * 12 10 9 27 27 H 1.09008 * 109.47207 * 299.99731 * 12 10 9 28 28 H 1.08997 * 109.47384 * 60.00019 * 13 12 10 29 29 H 1.08997 * 109.47329 * 299.99762 * 13 12 10 30 30 H 1.09000 * 109.47274 * 59.99916 * 14 13 12 31 31 H 1.08999 * 109.47493 * 300.00151 * 14 13 12 32 32 H 1.09000 * 109.46925 * 59.99705 * 15 14 13 33 33 H 1.09008 * 109.46725 * 300.00258 * 15 14 13 34 34 H 1.08997 * 109.47096 * 59.99673 * 16 15 14 35 35 H 1.09005 * 109.46515 * 299.99725 * 16 15 14 36 36 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 37 37 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 38 38 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 39 39 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 40 40 H 1.08005 * 119.97511 * 180.27480 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 6 2.2378 -6.0259 -0.0027 14 6 1.4727 -7.3509 -0.0027 15 6 2.4669 -8.5139 -0.0038 16 6 1.7019 -9.8389 -0.0044 17 6 2.6811 -10.9844 -0.0062 18 6 3.1305 -11.5100 1.1911 19 6 4.0285 -12.5597 1.1923 20 6 4.4791 -13.0868 -0.0094 21 8 5.3621 -14.1198 -0.0109 22 6 4.0306 -12.5542 -1.2093 23 6 3.1279 -11.5086 -1.2050 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3907 -0.0016 26 1 0.6172 -4.9204 -0.8924 27 1 0.6165 -4.9209 0.8876 28 1 2.8644 -5.9686 0.8873 29 1 2.8644 -5.9678 -0.8926 30 1 0.8457 -7.4085 -0.8924 31 1 0.8463 -7.4088 0.8875 32 1 3.0942 -8.4565 0.8857 33 1 3.0929 -8.4558 -0.8943 34 1 1.0748 -9.8960 -0.8941 35 1 1.0756 -9.8971 0.8859 36 1 2.7791 -11.0995 2.1263 37 1 4.3796 -12.9697 2.1277 38 1 4.9462 -14.9928 -0.0113 39 1 4.3833 -12.9599 -2.1460 40 1 2.7750 -11.0965 -2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611141577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:34 Heat of formation + Delta-G solvation = -114.241641 kcal Electronic energy + Delta-G solvation = -19624.041906 eV Core-core repulsion = 16401.469676 eV Total energy + Delta-G solvation = -3222.572231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.69539 -40.16965 -38.18279 -36.66107 -35.90848 -33.67534 -33.19325 -31.91041 -30.53580 -27.82697 -26.34014 -23.88675 -23.73484 -22.03584 -21.72551 -20.82339 -19.82893 -19.33592 -17.64878 -17.04270 -16.76385 -16.54817 -16.52910 -16.12363 -15.84073 -15.49530 -14.88227 -14.50315 -14.40615 -14.30789 -14.10512 -13.57088 -13.25096 -13.12789 -12.98286 -12.92139 -12.48665 -12.47944 -12.41477 -12.12870 -11.83477 -11.70833 -11.57342 -11.52348 -11.37406 -11.27934 -10.33908 -10.02903 -9.92597 -9.36709 -8.47715 -5.96969 0.28861 0.41667 1.38941 1.40446 1.51841 2.05921 2.29725 2.69143 3.19768 3.25062 3.33806 3.84306 3.91890 4.08191 4.12418 4.16540 4.19678 4.36231 4.48100 4.50068 4.59609 4.68035 4.82769 4.83272 4.92970 4.99862 5.06681 5.09917 5.12846 5.17648 5.39354 5.39807 5.41096 5.48241 5.48516 5.59925 5.74087 5.95121 5.99491 6.58547 6.86207 7.10992 7.55915 8.11799 8.69398 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050628 B = 0.002095 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.917582 B =13362.034889 C =13588.252526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.431 3.569 11 O -0.641 6.641 12 C -0.119 4.119 13 C -0.094 4.094 14 C -0.108 4.108 15 C -0.110 4.110 16 C -0.074 4.074 17 C -0.097 4.097 18 C -0.109 4.109 19 C -0.155 4.155 20 C 0.085 3.915 21 O -0.513 6.513 22 C -0.155 4.155 23 C -0.109 4.109 24 H 0.278 0.722 25 H 0.397 0.603 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.408 0.592 39 H 0.137 0.863 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 -26.447 -0.017 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.220 3.780 11 O -0.529 6.529 12 C -0.159 4.159 13 C -0.132 4.132 14 C -0.146 4.146 15 C -0.148 4.148 16 C -0.111 4.111 17 C -0.097 4.097 18 C -0.127 4.127 19 C -0.173 4.173 20 C 0.041 3.959 21 O -0.327 6.327 22 C -0.173 4.173 23 C -0.127 4.127 24 H 0.088 0.912 25 H 0.232 0.768 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.267 0.733 39 H 0.155 0.845 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.329 -25.848 -0.017 25.850 hybrid contribution -0.126 0.604 0.000 0.617 sum 0.203 -25.244 -0.017 25.245 Atomic orbital electron populations 1.69663 1.06803 1.29419 1.50098 1.26073 0.96610 1.02481 0.96186 0.84978 0.77780 0.76565 0.78939 1.19720 1.19266 1.19728 1.19661 0.92701 0.84312 1.50252 0.90519 1.42029 1.09384 1.04864 1.64775 1.21293 0.88245 0.86791 0.81699 1.90471 1.16418 1.88436 1.57613 1.21523 0.99015 0.90524 1.04858 1.21212 0.97134 0.93436 1.01393 1.21560 0.97862 0.91786 1.03350 1.21519 0.98053 0.93407 1.01795 1.20606 0.95884 0.90456 1.04180 1.20192 0.98843 0.97470 0.93169 1.21209 0.96956 0.95886 0.98638 1.21623 0.98482 0.98950 0.98277 1.18659 0.92203 0.92322 0.92753 1.84779 1.33929 1.17413 1.96534 1.21621 0.98425 0.98986 0.98294 1.21209 0.96916 0.95942 0.98618 0.91219 0.76849 0.88173 0.88164 0.93566 0.93560 0.90525 0.90516 0.92707 0.92713 0.89752 0.89749 0.84304 0.84481 0.73313 0.84486 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.17 13.05 21.67 0.28 -49.89 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 3 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.34 -19.79 9.68 84.04 0.81 -18.97 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -30.30 5.29 -306.98 -1.62 -31.92 16 10 C 0.43 21.12 7.78 87.66 0.68 21.80 16 11 O -0.64 -36.81 15.56 -3.06 -0.05 -36.85 16 12 C -0.12 -4.03 5.70 29.85 0.17 -3.86 16 13 C -0.09 -2.88 4.50 30.59 0.14 -2.74 16 14 C -0.11 -2.24 5.21 30.59 0.16 -2.08 16 15 C -0.11 -2.13 5.20 30.59 0.16 -1.98 16 16 C -0.07 -1.11 5.34 29.85 0.16 -0.95 16 17 C -0.10 -1.65 5.13 -19.85 -0.10 -1.75 16 18 C -0.11 -1.83 9.69 22.25 0.22 -1.61 16 19 C -0.15 -2.64 9.99 22.37 0.22 -2.42 16 20 C 0.08 1.51 6.71 22.51 0.15 1.66 16 21 O -0.51 -8.00 13.50 -92.38 -1.25 -9.24 16 22 C -0.15 -2.64 9.99 22.37 0.22 -2.42 16 23 C -0.11 -1.83 9.69 22.25 0.22 -1.61 16 24 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 26 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 28 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 29 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 35 H 0.08 1.08 8.09 -2.38 -0.02 1.06 16 36 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.41 2.16 9.06 -74.06 -0.67 1.49 16 39 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -72.42 344.27 2.71 -69.72 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -0.36 Total: 29.87 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 3.68 Total: -17.20 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.34 Total: -81.81 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -1.30 Total: -46.10 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -72.42 2.71 -69.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611141577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.526 kcal (2) G-P(sol) polarization free energy of solvation -72.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds