Wall clock time and date at job start Mon Mar 30 2020 01:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00261 * 2 1 4 4 H 1.48501 * 109.46790 * 269.99853 * 3 2 1 5 5 H 1.48489 * 109.47000 * 29.99685 * 3 2 1 6 6 H 1.48497 * 109.46779 * 150.00258 * 3 2 1 7 7 C 1.37880 * 119.99423 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99477 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47080 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46999 * 180.02562 * 10 9 7 12 12 N 1.46895 * 109.47145 * 185.30346 * 11 10 9 13 13 C 1.46898 * 111.00042 * 288.16497 * 12 11 10 14 14 C 1.50708 * 109.46932 * 300.26124 * 13 12 11 15 15 O 1.20829 * 119.99846 * 357.90563 * 14 13 12 16 16 O 1.34224 * 119.99977 * 177.89985 * 14 13 12 17 17 C 1.46905 * 111.00184 * 164.20683 * 12 11 10 18 18 C 1.50706 * 109.46853 * 189.99897 * 17 12 11 19 19 C 1.38237 * 119.99662 * 90.00326 * 18 17 12 20 20 C 1.38236 * 119.99721 * 179.97438 * 19 18 17 21 21 C 1.38241 * 119.99959 * 359.95592 * 20 19 18 22 22 C 1.38238 * 120.00045 * 0.27642 * 21 20 19 23 23 C 1.38234 * 119.99812 * 269.97532 * 18 17 12 24 24 H 0.97004 * 119.99816 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47170 * 60.00383 * 9 7 2 26 26 H 1.09005 * 109.47309 * 299.99978 * 9 7 2 27 27 H 1.08998 * 109.46878 * 60.00117 * 10 9 7 28 28 H 1.09005 * 109.46961 * 300.00104 * 10 9 7 29 29 H 1.08998 * 109.47688 * 65.30062 * 11 10 9 30 30 H 1.09008 * 109.46702 * 305.30084 * 11 10 9 31 31 H 1.09001 * 109.47433 * 60.26053 * 13 12 11 32 32 H 1.08997 * 109.47545 * 180.26681 * 13 12 11 33 33 H 0.96702 * 116.99874 * 179.97438 * 16 14 13 34 34 H 1.08994 * 109.46942 * 70.00391 * 17 12 11 35 35 H 1.08994 * 109.46914 * 310.00178 * 17 12 11 36 36 H 1.07994 * 120.00340 * 359.97438 * 19 18 17 37 37 H 1.07992 * 119.99802 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.99880 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.00122 * 179.72824 * 22 21 20 40 40 H 1.07992 * 120.00445 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9871 0.0033 12 7 2.4294 -6.1007 0.1323 13 6 3.1988 -6.2826 -1.1058 14 6 2.2560 -6.5740 -2.2449 15 8 1.0687 -6.6623 -2.0389 16 8 2.7352 -6.7352 -3.4882 17 6 1.7381 -7.3408 0.5097 18 6 2.7551 -8.3928 0.8708 19 6 3.1923 -8.5119 2.1768 20 6 4.1247 -9.4772 2.5081 21 6 4.6192 -10.3239 1.5336 22 6 4.1856 -10.2015 0.2267 23 6 3.2502 -9.2388 -0.1039 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6245 -2.5563 0.8920 27 1 2.8717 -3.6037 0.8927 28 1 2.8718 -3.6052 -0.8873 29 1 0.9268 -5.0877 -0.9304 30 1 0.7838 -5.0042 0.8418 31 1 3.7598 -5.3734 -1.3219 32 1 3.8905 -7.1162 -0.9846 33 1 2.0920 -6.9209 -4.1860 34 1 1.1357 -7.6905 -0.3286 35 1 1.0923 -7.1503 1.3668 36 1 2.8054 -7.8510 2.9382 37 1 4.4665 -9.5700 3.5283 38 1 5.3474 -11.0783 1.7925 39 1 4.5752 -10.8601 -0.5354 40 1 2.9086 -9.1457 -1.1241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692407085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:08 Heat of formation + Delta-G solvation = -88.626761 kcal Electronic energy + Delta-G solvation = -21280.207929 eV Core-core repulsion = 18058.746443 eV Total energy + Delta-G solvation = -3221.461486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87127 -40.12029 -38.43469 -36.88467 -35.72047 -33.73502 -32.22743 -31.75557 -29.73673 -28.39434 -25.92069 -24.13669 -23.42142 -22.88186 -21.71727 -21.31685 -19.20965 -18.53446 -17.85669 -17.41061 -17.31051 -16.66611 -16.52495 -16.19757 -15.91443 -15.70729 -15.07447 -14.55888 -14.32760 -14.23204 -13.90468 -13.61873 -13.46755 -13.24142 -12.94798 -12.89945 -12.79109 -12.43876 -12.34547 -12.24763 -12.07048 -11.86528 -11.81130 -11.37811 -11.37289 -11.10255 -10.55066 -9.78817 -9.72223 -9.34910 -8.19485 -6.30952 0.43617 0.54166 1.09788 1.40509 1.42300 1.53748 2.12874 2.41219 2.66241 3.10648 3.13605 3.76755 3.95388 4.01304 4.19192 4.19495 4.26192 4.31329 4.37600 4.46522 4.57767 4.65509 4.71350 4.74874 4.83796 4.92681 5.05361 5.13828 5.19885 5.24765 5.50923 5.58362 5.59411 5.66226 5.69404 5.74681 5.84864 5.88597 5.91883 6.15641 6.25712 6.86151 6.92186 7.38424 8.92658 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022187 B = 0.003764 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.696507 B = 7437.546072 C = 8093.185588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.087 4.087 11 C 0.050 3.950 12 N -0.500 5.500 13 C 0.053 3.947 14 C 0.451 3.549 15 O -0.542 6.542 16 O -0.513 6.513 17 C 0.077 3.923 18 C -0.087 4.087 19 C -0.112 4.112 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.128 4.128 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.009 1.009 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.422 0.578 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.165 -22.153 -0.917 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.125 4.125 11 C -0.077 4.077 12 N -0.222 5.222 13 C -0.077 4.077 14 C 0.294 3.706 15 O -0.433 6.433 16 O -0.325 6.325 17 C -0.050 4.050 18 C -0.088 4.088 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.146 4.146 24 H 0.072 0.928 25 H 0.002 0.998 26 H 0.009 0.991 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.283 0.717 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.304 -21.866 -0.182 24.173 hybrid contribution -1.349 0.852 -1.168 1.977 sum 8.955 -21.014 -1.350 22.883 Atomic orbital electron populations 1.70118 1.07933 1.27755 1.51807 1.26034 0.95774 1.03534 0.94730 0.85411 0.78717 0.78214 0.78502 1.19762 1.20801 1.18478 1.21690 0.93626 0.92181 1.50360 0.91907 1.18952 0.94405 0.93282 0.94472 1.21394 0.97912 0.92281 1.00918 1.22352 0.94038 0.89955 1.01384 1.62539 1.27111 1.04747 1.27792 1.22380 0.95572 1.06662 0.83096 1.25423 0.89109 0.71234 0.84864 1.90661 1.19672 1.48334 1.84675 1.84549 1.46620 1.82403 1.18904 1.21312 0.94375 0.87998 1.01316 1.19776 0.98191 0.96336 0.94474 1.21216 0.97620 0.98397 0.95826 1.21453 0.96788 0.95237 1.00707 1.21493 1.00132 0.99608 0.92926 1.21393 0.97012 0.98153 0.97460 1.21120 0.98394 0.96541 0.98591 0.92815 0.99751 0.99094 0.92198 0.93156 0.93610 0.91614 0.85704 0.84540 0.71667 0.92432 0.90010 0.85885 0.84157 0.83686 0.83975 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.37 13.29 21.45 0.28 -58.09 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.09 -3.70 5.09 30.60 0.16 -3.54 16 11 C 0.05 1.85 4.64 86.30 0.40 2.25 16 12 N -0.50 -14.85 4.66 -905.36 -4.22 -19.07 16 13 C 0.05 1.34 5.46 85.56 0.47 1.80 16 14 C 0.45 12.00 7.47 71.24 0.53 12.53 16 15 O -0.54 -17.85 12.47 21.96 0.27 -17.57 16 16 O -0.51 -10.44 13.42 -51.36 -0.69 -11.13 16 17 C 0.08 2.08 4.84 85.56 0.41 2.49 16 18 C -0.09 -2.02 4.89 -19.86 -0.10 -2.11 16 19 C -0.11 -2.39 9.70 22.27 0.22 -2.18 16 20 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 21 C -0.12 -1.89 10.05 22.27 0.22 -1.66 16 22 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 23 C -0.13 -2.57 7.90 22.27 0.18 -2.39 16 24 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 25 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 26 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 27 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.05 2.04 6.99 -2.38 -0.02 2.02 16 29 H 0.05 1.85 5.26 -2.39 -0.01 1.84 16 30 H 0.07 2.50 7.81 -2.38 -0.02 2.48 16 31 H 0.13 3.14 6.82 -2.39 -0.02 3.13 16 32 H 0.14 2.88 5.87 -2.39 -0.01 2.87 16 33 H 0.42 5.31 9.10 -74.06 -0.67 4.64 16 34 H 0.06 1.70 5.51 -2.39 -0.01 1.69 16 35 H 0.08 2.23 7.81 -2.39 -0.02 2.21 16 36 H 0.12 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.11 2.20 7.89 -2.91 -0.02 2.17 16 Total: -1.00 -71.62 330.12 1.82 -69.80 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.37 Total: 15.00 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 3.78 Total: -25.85 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -3.93 Total: -77.15 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.42 Total: -28.70 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -71.62 1.82 -69.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692407085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.830 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds