Wall clock time and date at job start Mon Mar 30 2020 01:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.50700 * 109.47329 * 246.61418 * 3 2 1 5 5 O 1.20831 * 120.00357 * 245.05043 * 4 3 2 6 6 O 1.34230 * 119.99690 * 65.04315 * 4 3 2 7 7 C 1.45204 * 116.99828 * 175.36111 * 6 4 3 8 8 C 1.53001 * 109.47212 * 184.85517 * 7 6 4 9 9 C 1.50700 * 115.54534 * 80.61925 * 8 7 6 10 10 H 1.08003 * 120.00299 * 269.20119 * 9 8 7 11 11 C 1.37882 * 120.00184 * 89.20214 * 9 8 7 12 12 N 1.31512 * 120.00212 * 175.96202 * 11 9 8 13 13 Si 1.86795 * 119.99771 * 355.96417 * 11 9 8 14 14 H 1.48499 * 109.47489 * 89.78421 * 13 11 9 15 15 H 1.48496 * 109.47204 * 209.78547 * 13 11 9 16 16 H 1.48506 * 109.47056 * 329.78546 * 13 11 9 17 17 C 1.53001 * 117.49868 * 294.95399 * 8 7 6 18 18 C 1.53006 * 60.02910 * 252.49570 * 17 8 7 19 19 C 1.52998 * 109.47359 * 6.61703 * 3 2 1 20 20 C 1.52992 * 109.47277 * 59.99950 * 19 3 2 21 21 C 1.53004 * 109.47161 * 59.99968 * 20 19 3 22 22 C 1.52998 * 109.47051 * 300.00171 * 21 20 19 23 23 C 1.52992 * 109.47277 * 59.99900 * 22 21 20 24 24 H 1.09005 * 109.46701 * 64.85899 * 7 6 4 25 25 H 1.08995 * 109.47115 * 304.86197 * 7 6 4 26 26 H 0.96988 * 120.00291 * 179.97438 * 12 11 9 27 27 H 1.08993 * 117.50237 * 359.97438 * 17 8 7 28 28 H 1.08997 * 117.49861 * 144.99706 * 17 8 7 29 29 H 1.08996 * 117.49879 * 107.50087 * 18 17 8 30 30 H 1.09007 * 117.49861 * 252.52298 * 18 17 8 31 31 H 1.09004 * 109.46899 * 180.02562 * 19 3 2 32 32 H 1.08995 * 109.47042 * 299.99829 * 19 3 2 33 33 H 1.09004 * 109.47349 * 299.99960 * 20 19 3 34 34 H 1.08996 * 109.47444 * 180.02562 * 20 19 3 35 35 H 1.09002 * 109.47005 * 179.97438 * 21 20 19 36 36 H 1.08999 * 109.46988 * 60.00515 * 21 20 19 37 37 H 1.09004 * 109.46899 * 299.99664 * 22 21 20 38 38 H 1.09000 * 109.46633 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47444 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.47349 * 60.00039 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1101 0.5648 1.3041 5 8 3.7272 1.6036 1.3153 6 8 2.8717 -0.0866 2.4532 7 6 3.4724 0.4592 3.6572 8 6 3.1931 -0.4760 4.8356 9 6 4.0960 -1.6781 4.9393 10 1 3.8199 -2.6041 4.4567 11 6 5.2744 -1.5960 5.6503 12 7 6.0233 -2.6656 5.8079 13 14 5.8073 0.0344 6.3899 14 1 5.2547 0.1597 7.7625 15 1 7.2901 0.0914 6.4462 16 1 5.3007 1.1486 5.5487 17 6 1.7368 -0.6464 5.2725 18 6 2.7063 0.1576 6.1412 19 6 3.1187 -1.4320 -0.1662 20 6 2.6090 -2.0047 -1.4902 21 6 3.1186 -1.1441 -2.6480 22 6 2.6079 0.2886 -2.4818 23 6 3.1175 0.8613 -1.1579 24 1 3.0456 1.4408 3.8634 25 1 4.5490 0.5536 3.5155 26 1 6.8524 -2.6077 6.3078 27 1 0.9776 -0.0920 4.7208 28 1 1.4317 -1.6280 5.6350 29 1 2.5850 1.2406 6.1607 30 1 3.0393 -0.2953 7.0751 31 1 4.2087 -1.4314 -0.1658 32 1 2.7557 -2.0451 0.6586 33 1 1.5189 -2.0053 -1.4902 34 1 2.9724 -3.0255 -1.6084 35 1 2.7558 -1.5524 -3.5913 36 1 4.2085 -1.1436 -2.6481 37 1 1.5178 0.2880 -2.4818 38 1 2.9705 0.9015 -3.3069 39 1 2.7541 1.8821 -1.0396 40 1 4.2076 0.8619 -1.1578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744275440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:35 Heat of formation + Delta-G solvation = -49.048184 kcal Electronic energy + Delta-G solvation = -21998.524890 eV Core-core repulsion = 18778.779659 eV Total energy + Delta-G solvation = -3219.745230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88409 -38.77430 -37.13941 -35.94333 -35.60546 -32.17039 -31.90759 -31.07686 -27.45879 -25.51255 -24.33137 -22.90798 -21.83842 -21.50343 -20.70265 -19.21942 -17.82496 -16.99445 -16.71346 -16.12144 -15.66015 -14.95059 -14.78973 -14.75202 -14.16719 -13.75070 -13.48778 -13.29770 -13.13885 -12.84484 -12.64491 -12.51420 -12.33302 -12.28127 -12.01979 -11.88028 -11.36505 -11.20378 -10.93770 -10.90760 -10.76096 -10.60753 -10.42452 -10.34530 -10.13381 -10.05198 -9.71146 -9.07080 -8.67728 -8.64549 -6.18612 -4.22222 2.13441 2.44323 2.61531 3.09911 3.23206 3.33569 3.36515 3.68435 4.32858 4.34370 4.42462 4.54873 4.79251 4.87854 4.89134 5.06214 5.13375 5.20069 5.24809 5.41066 5.53999 5.58000 5.73077 5.80160 5.85296 5.89225 5.90095 5.92914 6.00357 6.06151 6.09691 6.15613 6.17828 6.39563 6.64521 6.81056 6.95941 7.04424 7.36790 7.62909 7.96544 8.42814 8.86021 9.43540 10.92890 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.005125 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.927406 B = 5461.794023 C = 5714.280672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.224 3.776 3 C 0.054 3.946 4 C 0.469 3.531 5 O -0.500 6.500 6 O -0.329 6.329 7 C 0.106 3.894 8 C -0.007 4.007 9 C -0.486 4.486 10 H 0.082 0.918 11 C 0.079 3.921 12 N -0.893 5.893 13 Si 0.876 3.124 14 H -0.275 1.275 15 H -0.291 1.291 16 H -0.262 1.262 17 C -0.169 4.169 18 C -0.191 4.191 19 C -0.110 4.110 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.098 4.098 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.266 0.734 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 4.658 -14.314 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.094 4.094 3 C 0.049 3.951 4 C 0.309 3.691 5 O -0.388 6.388 6 O -0.244 6.244 7 C 0.033 3.967 8 C -0.008 4.008 9 C -0.523 4.523 10 H 0.100 0.900 11 C -0.124 4.124 12 N -0.529 5.529 13 Si 0.704 3.296 14 H -0.201 1.201 15 H -0.218 1.218 16 H -0.187 1.187 17 C -0.206 4.206 18 C -0.228 4.228 19 C -0.149 4.149 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.137 4.137 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.450 4.892 -14.155 15.937 hybrid contribution 0.893 1.002 0.694 1.511 sum -4.557 5.894 -13.461 15.385 Atomic orbital electron populations 1.81191 1.11999 1.07804 1.07603 1.28147 0.93889 0.93732 0.93680 1.18207 0.83377 1.00807 0.92725 1.22803 0.77645 0.82651 0.86020 1.90657 1.38121 1.22607 1.87402 1.86547 1.67532 1.54345 1.15970 1.23305 0.97690 0.95155 0.80535 1.19374 0.95163 0.97002 0.89241 1.20234 1.03261 0.95441 1.33389 0.89995 1.24993 0.96040 0.96184 0.95225 1.69876 1.13958 1.28389 1.40719 0.86898 0.77384 0.84990 0.80329 1.20088 1.21766 1.18686 1.22766 0.93211 1.00806 1.03829 1.23033 1.06073 0.97411 0.96251 1.21716 1.02713 0.90539 0.99889 1.21606 1.00961 0.99827 0.93557 1.21605 1.01408 0.94706 0.98328 1.21615 1.00945 0.96793 0.96651 1.21566 1.02803 0.98373 0.90931 0.93347 0.90677 0.92394 0.90816 0.89089 0.90710 0.88668 0.88754 0.88679 0.91921 0.90360 0.91551 0.91073 0.91984 0.90612 0.90025 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.56 18.54 42.15 0.78 -5.78 16 2 C 0.22 3.22 11.33 -20.76 -0.24 2.98 16 3 C 0.05 0.70 0.66 -158.45 -0.10 0.59 16 4 C 0.47 7.95 6.52 36.01 0.23 8.19 16 5 O -0.50 -9.24 15.72 -18.75 -0.29 -9.54 16 6 O -0.33 -6.45 9.92 -39.26 -0.39 -6.84 16 7 C 0.11 2.26 4.72 37.16 0.18 2.43 16 8 C -0.01 -0.15 1.07 -155.62 -0.17 -0.32 16 9 C -0.49 -13.06 9.41 -34.44 -0.32 -13.38 16 10 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 11 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 12 N -0.89 -26.12 13.96 55.43 0.77 -25.34 16 13 Si 0.88 20.91 24.85 -169.99 -4.23 16.69 16 14 H -0.28 -6.40 7.10 56.52 0.40 -6.00 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 16 H -0.26 -5.97 6.18 56.52 0.35 -5.63 16 17 C -0.17 -3.43 9.93 -26.73 -0.27 -3.70 16 18 C -0.19 -3.95 7.58 -26.69 -0.20 -4.15 16 19 C -0.11 -1.26 4.60 -26.74 -0.12 -1.39 16 20 C -0.12 -1.12 5.70 -26.73 -0.15 -1.27 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.12 -1.02 5.70 -26.74 -0.15 -1.17 16 23 C -0.10 -1.02 4.01 -26.73 -0.11 -1.13 16 24 H 0.05 0.96 7.94 -51.93 -0.41 0.55 16 25 H 0.07 1.67 7.34 -51.93 -0.38 1.29 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 29 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 30 H 0.09 2.04 7.20 -51.93 -0.37 1.67 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.23 8.03 -51.93 -0.42 0.81 16 33 H 0.06 0.63 7.23 -51.93 -0.38 0.25 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.57 7.23 -51.93 -0.38 0.20 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 328.59 15.07 4.95 4.95 Total: -1.00 -30.16 328.59 -6.25 -36.41 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.16 Total: 0.79 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.68 Total: -11.34 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 1.56 Total: -31.12 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.68 Total: -16.38 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.23 Total: 16.69 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.16 -6.25 -36.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.640 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds