Wall clock time and date at job start Mon Mar 30 2020 02:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38641 * 119.81389 * 2 1 4 4 C 1.37963 * 120.43580 * 179.69616 * 3 2 1 5 5 C 1.38942 * 120.07231 * 0.60086 * 4 3 2 6 6 N 1.38850 * 120.18051 * 179.69759 * 5 4 3 7 7 C 1.46901 * 110.99773 * 63.68323 * 6 5 4 8 8 C 1.46898 * 110.99780 * 299.72684 * 6 5 4 9 9 C 1.52998 * 109.46622 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47223 * 299.99778 * 8 6 5 11 11 C 1.40438 * 119.64183 * 359.42689 * 5 4 3 12 12 C 1.47234 * 120.22442 * 180.29614 * 11 5 4 13 13 O 1.21562 * 119.99481 * 359.97438 * 12 11 5 14 14 O 1.34787 * 120.00888 * 180.02562 * 12 11 5 15 15 C 1.34858 * 117.00549 * 179.97438 * 14 12 11 16 16 H 1.07997 * 120.00284 * 0.02562 * 15 14 12 17 17 C 1.38787 * 120.00221 * 179.97438 * 15 14 12 18 18 N 1.31428 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00270 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47113 * 60.00289 * 19 17 15 21 21 H 1.48509 * 109.47252 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47117 * 300.00085 * 19 17 15 23 23 C 1.37714 * 119.82179 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47449 * 269.97704 * 1 2 3 25 25 H 1.09005 * 109.47271 * 29.98397 * 1 2 3 26 26 H 1.09003 * 109.46903 * 149.97454 * 1 2 3 27 27 H 1.07992 * 119.78003 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.96455 * 180.32505 * 4 3 2 29 29 H 1.09002 * 109.47401 * 59.99876 * 7 6 5 30 30 H 1.09001 * 109.46874 * 299.99888 * 7 6 5 31 31 H 1.09004 * 109.46970 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.46814 * 60.00177 * 8 6 5 33 33 H 1.09000 * 109.47832 * 60.00258 * 9 8 6 34 34 H 1.09007 * 109.46784 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.47326 * 299.99614 * 9 8 6 36 36 H 1.08998 * 109.47057 * 60.00221 * 10 8 6 37 37 H 1.09007 * 109.46908 * 180.02562 * 10 8 6 38 38 H 1.09000 * 109.47552 * 299.99947 * 10 8 6 39 39 H 0.97003 * 120.00539 * 179.97438 * 18 17 15 40 40 H 1.08007 * 120.03754 * 0.02710 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2029 0.0000 4 6 3.5758 1.2179 0.0063 5 6 4.2851 0.0232 0.0001 6 7 5.6736 0.0357 0.0001 7 6 6.1945 0.6420 1.2325 8 6 6.1937 0.7266 -1.1873 9 6 7.7233 0.7204 -1.1516 10 6 5.7097 0.0081 -2.4483 11 6 3.5901 -1.1972 -0.0004 12 6 4.3288 -2.4708 -0.0003 13 8 5.5444 -2.4683 -0.0003 14 8 3.6574 -3.6395 -0.0013 15 6 4.3942 -4.7690 -0.0018 16 1 5.4726 -4.7104 -0.0009 17 6 3.7667 -6.0070 -0.0022 18 7 2.4544 -6.0785 -0.0028 19 14 4.7873 -7.5715 -0.0021 20 1 5.6436 -7.6039 1.2108 21 1 3.8851 -8.7511 -0.0033 22 1 5.6445 -7.6034 -1.2142 23 6 2.1919 -1.1948 -0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6497 2.1343 0.0004 28 1 4.1051 2.1594 0.0116 29 1 5.8502 0.0688 2.0933 30 1 5.8357 1.6682 1.3123 31 1 7.2842 0.6395 1.2062 32 1 5.8349 1.7558 -1.1951 33 1 8.0825 -0.3086 -1.1436 34 1 8.1093 1.2335 -2.0325 35 1 8.0678 1.2326 -0.2532 36 1 4.6200 0.0128 -2.4735 37 1 6.0961 0.5205 -3.3294 38 1 6.0685 -1.0211 -2.4406 39 1 2.0158 -6.9437 -0.0035 40 1 1.6495 -2.1288 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745120725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:59 Heat of formation + Delta-G solvation = -59.356327 kcal Electronic energy + Delta-G solvation = -22203.525278 eV Core-core repulsion = 18983.333052 eV Total energy + Delta-G solvation = -3220.192225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57766 -40.25270 -38.44998 -36.94136 -34.26212 -33.87202 -32.41220 -31.88518 -28.97687 -27.63194 -27.04096 -25.73673 -24.79499 -23.28862 -21.40468 -20.61316 -19.74056 -18.63038 -17.78007 -16.79454 -16.69585 -16.54700 -16.16080 -16.04659 -15.45450 -15.21474 -15.03500 -14.50768 -14.32548 -14.09199 -13.58994 -13.55824 -13.22457 -13.19513 -13.07893 -12.96555 -12.70491 -12.65217 -12.40401 -12.25539 -12.18052 -12.15212 -12.07066 -11.93753 -11.67467 -10.85329 -10.65783 -9.96713 -9.43118 -9.11610 -8.51311 -6.27316 -0.12869 0.29587 1.32027 1.39172 1.48202 1.94728 2.13287 2.75186 2.81351 2.88093 3.09900 3.86227 3.96503 3.97179 3.99486 4.17930 4.32223 4.35596 4.39768 4.49703 4.59037 4.71666 4.75505 4.82021 4.84338 4.88190 4.88589 4.93787 5.03177 5.03606 5.15431 5.18306 5.28496 5.30337 5.35516 5.52722 5.60694 5.86142 5.88295 6.18240 6.54271 6.78566 6.94139 7.90497 8.70130 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.006430 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.211014 B = 4353.753268 C = 5725.692129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C -0.074 4.074 4 C -0.155 4.155 5 C 0.139 3.861 6 N -0.518 5.518 7 C 0.036 3.964 8 C 0.088 3.912 9 C -0.140 4.140 10 C -0.140 4.140 11 C -0.112 4.112 12 C 0.433 3.567 13 O -0.533 6.533 14 O -0.250 6.250 15 C -0.413 4.413 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.905 5.905 19 Si 1.016 2.984 20 H -0.262 1.262 21 H -0.258 1.258 22 H -0.263 1.263 23 C -0.086 4.086 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.169 0.831 28 H 0.156 0.844 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.028 0.972 39 H 0.277 0.723 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 18.262 -1.052 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.175 4.175 5 C 0.044 3.956 6 N -0.240 5.240 7 C -0.109 4.109 8 C -0.018 4.018 9 C -0.197 4.197 10 C -0.197 4.197 11 C -0.114 4.114 12 C 0.280 3.720 13 O -0.428 6.428 14 O -0.160 6.160 15 C -0.489 4.489 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.543 5.543 19 Si 0.835 3.165 20 H -0.187 1.187 21 H -0.182 1.182 22 H -0.187 1.187 23 C -0.105 4.105 24 H 0.100 0.900 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.187 0.813 28 H 0.173 0.827 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.728 17.612 -1.072 17.659 hybrid contribution 0.186 -0.739 0.107 0.770 sum 0.914 16.873 -0.965 16.925 Atomic orbital electron populations 1.20835 0.88491 1.03833 1.03391 1.20195 0.98027 0.91803 1.00126 1.21468 0.93442 0.98314 0.95980 1.21823 0.95452 0.97442 1.02802 1.18701 0.89487 0.90948 0.96510 1.59102 1.04265 1.56811 1.03809 1.22408 1.01488 0.97054 0.90000 1.21722 0.96423 0.95211 0.88470 1.21875 0.93001 1.01749 1.03103 1.21791 1.00053 1.00106 0.97780 1.19444 0.93666 0.90177 1.08147 1.21586 0.86882 0.85492 0.78019 1.90630 1.15195 1.87989 1.48965 1.83949 1.40380 1.13819 1.77859 1.21347 0.91349 0.82060 1.54108 0.90404 1.26506 0.97567 1.01496 0.95037 1.70068 1.09533 1.27286 1.47406 0.84715 0.77385 0.74723 0.79676 1.18705 1.18189 1.18744 1.21392 0.92353 0.99368 0.97350 0.90044 0.88575 0.92252 0.81313 0.82653 0.93806 0.92940 0.89567 0.91714 0.94256 0.89942 0.90964 0.94466 0.89573 0.95281 0.91332 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.30 10.00 71.24 0.71 -1.59 16 2 C -0.10 -2.89 5.87 -19.89 -0.12 -3.01 16 3 C -0.07 -1.68 9.68 22.30 0.22 -1.46 16 4 C -0.16 -4.00 8.54 22.37 0.19 -3.80 16 5 C 0.14 4.96 3.30 38.74 0.13 5.08 16 6 N -0.52 -18.10 2.55 -695.30 -1.77 -19.87 16 7 C 0.04 1.03 9.00 127.69 1.15 2.18 16 8 C 0.09 2.45 2.45 44.91 0.11 2.56 16 9 C -0.14 -3.39 8.84 71.98 0.64 -2.75 16 10 C -0.14 -4.43 9.07 71.98 0.65 -3.77 16 11 C -0.11 -5.03 5.89 -19.99 -0.12 -5.15 16 12 C 0.43 24.53 7.82 70.19 0.55 25.08 16 13 O -0.53 -31.54 14.28 19.64 0.28 -31.26 16 14 O -0.25 -15.99 8.99 10.74 0.10 -15.90 16 15 C -0.41 -26.65 9.65 67.95 0.66 -26.00 16 16 H 0.08 5.10 6.86 -2.91 -0.02 5.08 16 17 C -0.01 -0.40 5.49 84.88 0.47 0.07 16 18 N -0.90 -55.82 13.67 21.63 0.30 -55.52 16 19 Si 1.02 45.74 29.55 68.60 2.03 47.77 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 C -0.09 -3.41 9.25 22.53 0.21 -3.21 16 24 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.10 1.41 8.08 -2.38 -0.02 1.39 16 26 H 0.06 1.39 8.08 -2.39 -0.02 1.37 16 27 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.16 2.91 7.01 -2.91 -0.02 2.89 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.13 7.31 -2.39 -0.02 1.11 16 31 H 0.09 2.19 6.01 -2.38 -0.01 2.18 16 32 H 0.07 1.44 7.12 -2.39 -0.02 1.42 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.07 1.48 6.26 -2.39 -0.01 1.46 16 36 H 0.04 1.25 7.22 -2.39 -0.02 1.24 16 37 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.11 5.02 7.61 -2.91 -0.02 4.99 16 Total: -1.00 -80.28 332.01 7.40 -72.88 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 1.03 Total: 17.66 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 5.44 Total: -15.77 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -1.48 Total: -75.39 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: 0.38 Total: -47.15 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -80.28 7.40 -72.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745120725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.527 kcal (2) G-P(sol) polarization free energy of solvation -80.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds