Wall clock time and date at job start Mon Mar 30 2020 02:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38629 * 119.81582 * 2 1 4 4 C 1.37951 * 120.43242 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.96316 * 179.97438 * 4 3 2 6 6 C 1.38958 * 120.06977 * 0.02562 * 4 3 2 7 7 N 1.38829 * 120.18033 * 180.02562 * 6 4 3 8 8 C 1.40401 * 119.64087 * 0.02562 * 6 4 3 9 9 C 1.47296 * 120.21292 * 180.02562 * 8 6 4 10 10 O 1.21521 * 119.99867 * 354.08290 * 9 8 6 11 11 O 1.34767 * 119.99883 * 174.08833 * 9 8 6 12 12 C 1.45199 * 117.00143 * 180.02562 * 11 9 8 13 13 C 1.52991 * 109.47324 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47104 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46866 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00355 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99660 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00457 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00058 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47264 * 89.99462 * 19 17 15 21 21 H 1.48498 * 109.47273 * 209.99818 * 19 17 15 22 22 H 1.48504 * 109.46746 * 330.00000 * 19 17 15 23 23 C 1.37721 * 119.82013 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47124 * 270.00236 * 1 2 3 25 25 H 1.08995 * 109.47128 * 30.00410 * 1 2 3 26 26 H 1.09001 * 109.46925 * 150.00180 * 1 2 3 27 27 H 1.08001 * 119.78454 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47144 * 270.02392 * 5 4 3 29 29 H 1.09003 * 109.47091 * 30.02604 * 5 4 3 30 30 H 1.09000 * 109.47231 * 150.02144 * 5 4 3 31 31 H 0.97004 * 119.99791 * 335.07110 * 7 6 4 32 32 H 0.96999 * 120.00530 * 155.07574 * 7 6 4 33 33 H 1.09001 * 109.46649 * 299.99731 * 12 11 9 34 34 H 1.09000 * 109.46925 * 59.99266 * 12 11 9 35 35 H 1.08998 * 109.47484 * 300.00219 * 13 12 11 36 36 H 1.09008 * 109.47428 * 60.00103 * 13 12 11 37 37 H 1.08993 * 109.47649 * 299.99903 * 14 13 12 38 38 H 1.09002 * 109.46906 * 60.00570 * 14 13 12 39 39 H 0.96998 * 120.00708 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.04008 * 0.28236 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1963 1.2028 0.0000 4 6 3.5758 1.2176 0.0005 5 6 4.3143 2.5312 -0.0001 6 6 4.2849 0.0226 0.0005 7 7 5.6732 0.0349 0.0016 8 6 3.5899 -1.1973 -0.0006 9 6 4.3289 -2.4714 0.0000 10 8 5.5394 -2.4718 -0.1071 11 8 3.6626 -3.6368 0.1192 12 6 4.4555 -4.8531 0.1126 13 6 3.5323 -6.0645 0.2574 14 6 4.3678 -7.3462 0.2498 15 6 3.4584 -8.5394 0.3931 16 1 2.3913 -8.3978 0.4804 17 6 3.9889 -9.8120 0.4127 18 7 5.2883 -9.9845 0.3069 19 14 2.8617 -11.2911 0.5896 20 1 2.4399 -11.7558 -0.7563 21 1 3.5855 -12.3845 1.2864 22 1 1.6636 -10.9087 1.3792 23 6 2.1919 -1.1949 0.0005 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6498 2.1343 0.0004 28 1 4.4924 2.8475 -1.0279 29 1 3.7166 3.2843 0.5135 30 1 5.2681 2.4120 0.5139 31 1 6.1517 0.8011 -0.3518 32 1 6.1647 -0.7227 0.3556 33 1 5.0040 -4.9241 -0.8267 34 1 5.1600 -4.8321 0.9440 35 1 2.9841 -5.9933 1.1967 36 1 2.8275 -6.0858 -0.5739 37 1 4.9157 -7.4173 -0.6898 38 1 5.0728 -7.3253 1.0809 39 1 5.6615 -10.8797 0.3203 40 1 1.6497 -2.1288 -0.0037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767316575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:35 Heat of formation + Delta-G solvation = -87.378921 kcal Electronic energy + Delta-G solvation = -20550.139268 eV Core-core repulsion = 17328.731892 eV Total energy + Delta-G solvation = -3221.407376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63563 -39.18787 -36.53266 -35.20327 -33.96251 -32.85735 -31.72481 -31.04130 -27.68941 -26.99348 -25.88156 -24.45108 -22.90297 -20.84628 -20.53137 -20.15796 -17.54354 -17.16676 -16.94064 -16.54625 -16.17809 -15.93895 -14.82101 -14.46178 -14.28639 -14.09643 -13.88151 -13.79811 -13.40307 -13.08356 -12.77754 -12.32735 -12.21939 -12.16338 -11.94435 -11.89702 -11.75254 -11.34072 -10.96210 -10.64901 -10.61541 -10.47367 -10.35748 -10.12326 -9.70539 -9.49042 -9.15497 -8.99408 -8.38106 -7.66277 -6.02878 -4.05849 0.72974 1.35324 2.62486 2.95675 3.31601 3.37696 3.41384 3.67486 3.80401 4.43933 4.53585 4.65575 4.76258 5.00319 5.09729 5.29968 5.33108 5.33638 5.34634 5.41834 5.52157 5.60537 5.62651 5.66336 5.84447 5.94275 6.00211 6.05231 6.17158 6.42724 6.51975 6.56072 6.68602 6.85763 6.99851 7.34128 7.61206 7.72413 7.73099 7.95410 8.00570 8.36874 9.00464 9.58403 11.08621 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029907 B = 0.002991 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.009077 B = 9359.490462 C =10253.196524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.155 4.155 3 C -0.042 4.042 4 C -0.174 4.174 5 C -0.104 4.104 6 C 0.273 3.727 7 N -0.860 5.860 8 C -0.198 4.198 9 C 0.514 3.486 10 O -0.524 6.524 11 O -0.352 6.352 12 C 0.069 3.931 13 C -0.109 4.109 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.020 4.020 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.395 0.605 32 H 0.413 0.587 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.105 25.912 -0.662 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.157 4.157 3 C -0.061 4.061 4 C -0.179 4.179 5 C -0.161 4.161 6 C 0.163 3.837 7 N -0.405 5.405 8 C -0.204 4.204 9 C 0.361 3.639 10 O -0.416 6.416 11 O -0.268 6.268 12 C -0.003 4.003 13 C -0.147 4.147 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.039 4.039 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.224 0.776 32 H 0.250 0.750 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.610 25.668 -0.676 26.087 hybrid contribution 0.057 -0.996 0.044 0.999 sum -4.553 24.672 -0.632 25.096 Atomic orbital electron populations 1.20670 0.90823 1.02590 1.02108 1.19617 0.96333 0.92523 1.07258 1.20899 0.92710 0.97644 0.94833 1.19421 0.93904 0.93592 1.10958 1.20595 0.99978 0.93567 1.01965 1.17448 0.84624 0.91343 0.90238 1.42907 1.03056 1.25221 1.69338 1.18749 0.93792 0.89154 1.18751 1.20939 0.85750 0.84674 0.72537 1.90608 1.15372 1.87777 1.47822 1.86555 1.42356 1.15191 1.82736 1.23497 0.94520 0.80227 1.02100 1.21763 0.98550 0.92474 1.01866 1.19049 0.95122 0.89472 0.97656 1.21179 0.93556 0.90874 1.50316 0.92413 1.25032 0.95062 0.99158 0.95231 1.69962 1.10788 1.22274 1.50397 0.86546 0.80697 0.82266 0.78221 1.20609 1.21198 1.19793 1.21192 0.91959 0.98592 0.92167 0.91574 0.91936 0.91522 0.85738 0.91639 0.91366 0.91835 0.77590 0.74956 0.91523 0.91547 0.92125 0.92134 0.96250 0.96247 0.92896 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.00 36.01 0.36 -0.44 16 2 C -0.16 -1.57 5.87 -104.66 -0.61 -2.18 16 3 C -0.04 -0.38 9.33 -39.54 -0.37 -0.75 16 4 C -0.17 -1.71 5.89 -104.46 -0.62 -2.32 16 5 C -0.10 -0.71 9.44 36.00 0.34 -0.37 16 6 C 0.27 3.30 6.74 -83.61 -0.56 2.74 16 7 N -0.86 -9.37 8.08 32.55 0.26 -9.11 16 8 C -0.20 -2.77 5.89 -104.82 -0.62 -3.39 16 9 C 0.51 8.56 7.86 34.41 0.27 8.83 16 10 O -0.52 -9.37 13.62 -19.28 -0.26 -9.63 16 11 O -0.35 -6.21 9.49 -40.67 -0.39 -6.60 16 12 C 0.07 1.32 5.48 37.15 0.20 1.53 16 13 C -0.11 -2.30 5.53 -26.74 -0.15 -2.45 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.02 -0.25 9.25 -39.19 -0.36 -0.61 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 26 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.06 0.40 6.99 -51.93 -0.36 0.04 16 31 H 0.40 3.19 7.52 -40.82 -0.31 2.88 16 32 H 0.41 5.17 6.14 -40.82 -0.25 4.92 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.14 1.64 7.62 -52.49 -0.40 1.24 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -31.71 337.91 -8.17 -39.88 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.93 Total: 2.51 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.67 Total: -12.51 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 1.00 Total: -35.40 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.65 Total: -16.23 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.71 -8.17 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767316575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.501 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds