Wall clock time and date at job start Mon Mar 30 2020 01:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86798 * 119.99857 * 2 1 4 4 H 1.48497 * 109.47358 * 269.99900 * 3 2 1 5 5 H 1.48501 * 109.47268 * 30.00263 * 3 2 1 6 6 H 1.48507 * 109.46900 * 150.00282 * 3 2 1 7 7 C 1.38654 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00155 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99729 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99554 * 185.05488 * 9 7 2 11 11 C 1.38877 * 120.06858 * 354.46378 * 10 9 7 12 12 C 1.38097 * 119.92968 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06717 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.92634 * 179.97438 * 13 12 11 15 15 N 1.46904 * 109.47294 * 90.00393 * 14 13 12 16 16 C 1.46891 * 111.00219 * 179.97438 * 15 14 13 17 17 H 1.08999 * 109.47507 * 35.00016 * 16 15 14 18 18 C 1.53001 * 109.47054 * 274.99849 * 16 15 14 19 19 O 1.42897 * 109.47385 * 294.99993 * 18 16 15 20 20 C 1.53002 * 109.47183 * 155.00055 * 16 15 14 21 21 C 1.53000 * 117.49798 * 248.74904 * 20 16 15 22 22 C 1.53006 * 117.49982 * 180.08567 * 20 16 15 23 23 C 1.38294 * 120.14127 * 0.25276 * 13 12 11 24 24 C 1.38103 * 120.06349 * 359.44907 * 23 13 12 25 25 H 0.96993 * 119.99510 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.03705 * 0.02562 * 11 10 9 27 27 H 1.07993 * 119.96848 * 180.02562 * 12 11 10 28 28 H 1.08995 * 109.47687 * 330.00404 * 14 13 12 29 29 H 1.09001 * 109.46850 * 210.00179 * 14 13 12 30 30 H 1.00902 * 110.99859 * 303.95507 * 15 14 13 31 31 H 1.09009 * 109.47306 * 174.99974 * 18 16 15 32 32 H 1.09003 * 109.47248 * 55.00283 * 18 16 15 33 33 H 0.96702 * 114.00521 * 180.02562 * 19 18 16 34 34 H 1.08999 * 115.55102 * 34.41783 * 20 16 15 35 35 H 1.09000 * 117.50093 * 359.97438 * 21 20 16 36 36 H 1.08997 * 117.50003 * 145.02055 * 21 20 16 37 37 H 1.08995 * 117.49584 * 214.97963 * 22 20 16 38 38 H 1.08998 * 117.49760 * 359.97438 * 22 20 16 39 39 H 1.07993 * 119.96999 * 179.70237 * 23 13 12 40 40 H 1.08005 * 120.03183 * 180.27512 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0700 -3.5047 0.1045 11 6 3.4572 -3.4395 0.0921 12 6 4.2023 -4.5972 0.1997 13 6 3.5685 -5.8207 0.3192 14 6 4.3847 -7.0821 0.4358 15 7 4.6561 -7.3606 1.8524 16 6 5.4511 -8.5863 2.0051 17 1 6.1517 -8.6708 1.1744 18 6 4.5201 -9.8004 2.0127 19 8 3.6794 -9.7489 3.1670 20 6 6.2268 -8.5302 3.3228 21 6 7.7483 -8.3915 3.2415 22 6 7.1223 -9.7222 3.6666 23 6 2.1873 -5.8894 0.3261 24 6 1.4366 -4.7347 0.2251 25 1 -0.4849 0.8400 0.0004 26 1 3.9527 -2.4845 -0.0016 27 1 5.2811 -4.5472 0.1905 28 1 5.3274 -6.9555 -0.0966 29 1 3.8311 -7.9145 0.0015 30 1 5.1118 -6.5762 2.2943 31 1 5.1144 -10.7139 2.0365 32 1 3.9038 -9.7913 1.1136 33 1 3.0618 -10.4897 3.2373 34 1 5.7189 -8.0283 4.1463 35 1 8.1968 -8.3405 2.2493 36 1 8.2415 -7.7986 4.0117 37 1 7.2039 -10.0041 4.7164 38 1 7.1586 -10.5465 2.9544 39 1 1.6952 -6.8467 0.4147 40 1 0.3579 -4.7886 0.2350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771816715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:30 Heat of formation + Delta-G solvation = -25.763831 kcal Electronic energy + Delta-G solvation = -20652.005598 eV Core-core repulsion = 17433.270053 eV Total energy + Delta-G solvation = -3218.735545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.19193 -38.69391 -36.77894 -36.13745 -34.60501 -32.27253 -30.31030 -30.07461 -27.78197 -25.57692 -24.59994 -22.70417 -22.47156 -21.90970 -20.43286 -19.95984 -17.95196 -17.41930 -17.05384 -16.49426 -15.26634 -14.92309 -14.74030 -14.54952 -14.28742 -14.03611 -13.61634 -13.57045 -13.39140 -13.19670 -12.66353 -12.47286 -12.22391 -11.89229 -11.76279 -11.55267 -11.26249 -10.98054 -10.83109 -10.65045 -10.59700 -10.43933 -10.38457 -10.10308 -9.97312 -9.30188 -8.81252 -8.27827 -8.12035 -7.14509 -6.42767 -4.01577 2.26998 2.32428 3.13755 3.14911 3.19748 3.59097 3.98435 4.06782 4.30311 4.55202 4.66749 4.71198 4.85977 5.10968 5.16325 5.21459 5.30563 5.35959 5.38845 5.39378 5.46027 5.54680 5.62168 5.70320 5.77731 5.86356 5.88636 5.94301 6.11590 6.25667 6.46979 6.75128 6.94282 7.06560 7.16305 7.31171 7.39972 7.47229 7.54910 7.67722 7.87353 8.02506 9.02956 9.73842 10.75426 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029185 B = 0.003165 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.170466 B = 8844.362884 C = 9404.474050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.066 4.066 13 C -0.183 4.183 14 C 0.117 3.883 15 N -0.668 5.668 16 C 0.117 3.883 17 H 0.052 0.948 18 C 0.093 3.907 19 O -0.551 6.551 20 C -0.139 4.139 21 C -0.188 4.188 22 C -0.173 4.173 23 C -0.050 4.050 24 C -0.194 4.194 25 H 0.270 0.730 26 H 0.126 0.874 27 H 0.102 0.898 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.345 0.655 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.369 0.631 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.206 -17.643 3.553 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.085 4.085 13 C -0.184 4.184 14 C -0.011 4.011 15 N -0.300 5.300 16 C 0.007 3.993 17 H 0.070 0.930 18 C 0.014 3.986 19 O -0.355 6.355 20 C -0.157 4.157 21 C -0.225 4.225 22 C -0.211 4.211 23 C -0.069 4.069 24 C -0.214 4.214 25 H 0.080 0.920 26 H 0.143 0.857 27 H 0.120 0.880 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.164 0.836 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.214 0.786 34 H 0.132 0.868 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.516 -17.177 3.731 21.014 hybrid contribution 1.101 0.633 -0.442 1.345 sum 12.617 -16.545 3.289 21.065 Atomic orbital electron populations 1.70043 1.05952 1.27624 1.46219 1.25286 0.95835 0.98813 0.96602 0.85718 0.78931 0.80140 0.78670 1.19917 1.20252 1.19210 1.21320 0.91776 0.80873 1.52810 0.89115 1.83982 1.34352 1.11453 1.78411 1.19398 0.90277 0.88044 0.92048 1.21108 0.93829 0.98766 1.11692 1.20581 0.97989 0.91954 0.97945 1.19083 0.93689 0.93361 1.12284 1.20690 0.96866 0.95624 0.87896 1.60533 1.49904 1.04921 1.14680 1.21159 0.92071 0.91426 0.94681 0.93021 1.22132 0.92192 0.95972 0.88329 1.86618 1.53464 1.50594 1.44784 1.22282 0.91077 1.02882 0.99504 1.23104 0.95890 1.00738 1.02774 1.22862 1.04407 0.91812 1.01987 1.20451 0.92842 0.96644 0.96976 1.20226 0.99571 0.90347 1.11230 0.92046 0.85674 0.87969 0.95634 0.91413 0.83580 0.94330 0.93923 0.78595 0.86762 0.89071 0.88782 0.88837 0.89150 0.87127 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 9 O -0.18 -5.18 9.76 0.03 0.00 -5.18 16 10 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.23 -5.17 9.17 -39.40 -0.36 -5.53 16 12 C -0.07 -1.22 9.69 -39.61 -0.38 -1.60 16 13 C -0.18 -3.17 5.40 -104.58 -0.56 -3.74 16 14 C 0.12 1.61 5.61 -4.97 -0.03 1.59 16 15 N -0.67 -8.86 6.24 -108.00 -0.67 -9.54 16 16 C 0.12 1.26 2.64 -67.72 -0.18 1.08 16 17 H 0.05 0.52 7.56 -51.93 -0.39 0.13 16 18 C 0.09 0.92 6.57 37.16 0.24 1.17 16 19 O -0.55 -6.15 13.10 -35.23 -0.46 -6.61 16 20 C -0.14 -1.41 4.63 -90.62 -0.42 -1.83 16 21 C -0.19 -1.62 10.18 -26.69 -0.27 -1.90 16 22 C -0.17 -1.45 9.80 -26.68 -0.26 -1.72 16 23 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 24 C -0.19 -4.23 9.99 -39.39 -0.39 -4.62 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 27 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.03 0.33 8.00 -51.93 -0.42 -0.09 16 29 H 0.07 0.89 7.30 -51.93 -0.38 0.51 16 30 H 0.35 4.70 8.35 -39.29 -0.33 4.37 16 31 H 0.04 0.31 7.48 -51.92 -0.39 -0.08 16 32 H 0.04 0.43 7.35 -51.93 -0.38 0.04 16 33 H 0.37 2.52 9.12 45.56 0.42 2.93 16 34 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.68 7.67 -51.93 -0.40 0.29 16 39 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.12 2.45 8.06 -52.48 -0.42 2.02 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -31.88 337.26 -8.31 -40.19 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.93 Total: 9.86 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -3.07 Total: -24.64 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.08 Total: -34.38 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.46 Total: -11.79 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.88 -8.31 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771816715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.429 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds