Wall clock time and date at job start Mon Mar 30 2020 01:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48492 * 109.47382 * 240.00134 * 3 2 1 5 5 H 1.48506 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46694 * 119.99931 * 3 2 1 7 7 C 1.37871 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47524 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47450 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47326 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99965 * 179.97438 * 12 11 10 14 14 O 1.21275 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99806 * 180.02562 * 13 12 11 16 16 C 1.50699 * 109.46892 * 180.02562 * 15 13 12 17 17 C 1.38258 * 119.99734 * 265.01848 * 16 15 13 18 18 C 1.38213 * 120.00082 * 179.97438 * 17 16 15 19 19 C 1.38263 * 119.99986 * 0.02562 * 18 17 16 20 20 C 1.38215 * 119.99577 * 359.70149 * 19 18 17 21 21 C 1.38209 * 120.00423 * 84.99936 * 16 15 13 22 22 C 1.50701 * 119.99797 * 0.02562 * 21 16 15 23 23 O 1.42903 * 109.46878 * 179.97438 * 22 21 16 24 24 H 0.97002 * 120.00201 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46731 * 60.00217 * 9 7 2 26 26 H 1.09001 * 109.46922 * 300.00666 * 9 7 2 27 27 H 1.08998 * 109.47258 * 59.99556 * 10 9 7 28 28 H 1.08999 * 109.46946 * 300.00326 * 10 9 7 29 29 H 1.09003 * 109.46920 * 60.00000 * 11 10 9 30 30 H 1.08999 * 109.47160 * 300.00009 * 11 10 9 31 31 H 0.97002 * 120.00014 * 0.02562 * 12 11 10 32 32 H 1.08994 * 109.47345 * 60.00419 * 15 13 12 33 33 H 1.09006 * 109.46918 * 300.00179 * 15 13 12 34 34 H 1.08002 * 120.00011 * 0.02562 * 17 16 15 35 35 H 1.07994 * 120.00169 * 180.02562 * 18 17 16 36 36 H 1.07998 * 119.99986 * 179.97438 * 19 18 17 37 37 H 1.08004 * 119.99524 * 180.29857 * 20 19 18 38 38 H 1.09002 * 109.47060 * 299.99979 * 22 21 16 39 39 H 1.09001 * 109.47380 * 60.00066 * 22 21 16 40 40 H 0.96700 * 113.99509 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1005 -0.0018 13 6 1.9832 -7.3713 -0.0019 14 8 0.7908 -7.5928 -0.0020 15 6 2.9625 -8.5167 -0.0020 16 6 2.2090 -9.8218 -0.0027 17 6 1.9530 -10.4728 1.1898 18 6 1.2615 -11.6695 1.1892 19 6 0.8262 -12.2158 -0.0039 20 6 1.0773 -11.5621 -1.1956 21 6 1.7736 -10.3677 -1.1954 22 6 2.0527 -9.6581 -2.4953 23 8 1.5072 -10.4149 -3.5778 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8905 29 1 0.8540 -5.0446 -0.8914 30 1 0.8535 -5.0451 0.8886 31 1 3.3861 -5.9233 -0.0014 32 1 3.5891 -8.4590 0.8880 33 1 3.5892 -8.4588 -0.8920 34 1 2.2927 -10.0458 2.1219 35 1 1.0611 -12.1779 2.1208 36 1 0.2862 -13.1511 -0.0044 37 1 0.7330 -11.9865 -2.1272 38 1 1.5942 -8.6694 -2.4752 39 1 3.1296 -9.5566 -2.6298 40 1 1.6496 -10.0164 -4.4472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779764582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:39 Heat of formation + Delta-G solvation = -109.827388 kcal Electronic energy + Delta-G solvation = -20436.964899 eV Core-core repulsion = 17214.584085 eV Total energy + Delta-G solvation = -3222.380815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.23417 -39.89439 -37.55898 -36.95139 -35.17830 -34.09172 -32.96025 -32.25968 -29.48964 -27.97305 -26.85969 -24.93739 -23.01526 -22.30603 -22.10920 -20.97703 -18.58057 -18.43994 -17.98401 -17.54269 -16.81277 -16.76568 -16.43074 -15.98638 -15.93051 -15.69603 -15.19932 -14.75485 -14.68163 -14.23317 -13.99873 -13.73121 -13.63044 -13.26878 -13.05585 -12.95511 -12.69488 -12.55390 -12.41067 -11.91773 -11.75073 -11.66690 -11.58411 -11.27615 -11.25835 -10.88938 -10.55280 -10.07860 -9.69232 -9.50074 -8.19746 -6.31664 0.37438 0.49754 1.41725 1.44773 1.52646 1.66032 2.24197 2.42817 2.88562 3.13988 3.27117 3.67895 3.89189 4.01209 4.09589 4.17500 4.21253 4.23351 4.31399 4.39949 4.47785 4.55303 4.59837 4.69080 4.83712 4.94399 4.99960 5.10734 5.17007 5.18151 5.45149 5.53093 5.54762 5.62065 5.67443 5.70262 5.83807 6.11159 6.21568 6.62100 6.83907 6.86221 7.30758 7.38290 8.92228 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033668 B = 0.002715 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.441050 B =10311.674174 C =10630.754407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.130 3.870 12 N -0.715 5.715 13 C 0.507 3.493 14 O -0.584 6.584 15 C -0.097 4.097 16 C -0.076 4.076 17 C -0.119 4.119 18 C -0.129 4.129 19 C -0.131 4.131 20 C -0.118 4.118 21 C -0.097 4.097 22 C 0.118 3.882 23 O -0.584 6.584 24 H 0.263 0.737 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.418 0.582 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.458 -23.217 -1.767 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.006 3.994 12 N -0.367 5.367 13 C 0.295 3.705 14 O -0.464 6.464 15 C -0.136 4.136 16 C -0.076 4.076 17 C -0.137 4.137 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.136 4.136 21 C -0.097 4.097 22 C 0.040 3.960 23 O -0.393 6.393 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.255 0.745 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.297 -23.637 -1.292 25.432 hybrid contribution 0.147 1.578 -0.458 1.650 sum 9.444 -22.059 -1.751 24.059 Atomic orbital electron populations 1.70110 1.08016 1.27878 1.51669 1.26042 0.95732 1.03633 0.94766 0.85463 0.78179 0.77851 0.79328 1.18916 1.21275 1.18963 1.21668 0.93801 0.91981 1.50518 0.91379 1.18945 0.94487 0.93140 0.94900 1.21586 0.98356 0.91665 1.02249 1.21183 0.92067 0.85818 1.00339 1.45985 1.11186 1.04903 1.74669 1.21193 0.89689 0.84471 0.75188 1.90728 1.19276 1.85347 1.51028 1.20763 0.96785 0.87900 1.08194 1.19241 0.99951 0.95568 0.92882 1.21276 0.99074 0.95757 0.97599 1.21443 0.98142 0.96133 0.98940 1.21460 1.00153 1.00831 0.92401 1.21090 0.98348 0.95247 0.98892 1.19803 0.99381 0.96238 0.94287 1.20910 0.98201 0.92477 0.84383 1.86374 1.81970 1.52240 1.18729 0.92819 0.99134 0.99193 0.91234 0.91166 0.93592 0.93659 0.74506 0.84612 0.85280 0.84347 0.83832 0.84200 0.85545 0.93700 0.89665 0.74885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 13.29 21.45 0.28 -56.96 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.19 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 11 C 0.13 4.49 5.67 86.38 0.49 4.98 16 12 N -0.71 -17.98 5.56 -463.07 -2.57 -20.55 16 13 C 0.51 13.52 7.47 87.66 0.65 14.18 16 14 O -0.58 -21.93 16.03 -3.01 -0.05 -21.98 16 15 C -0.10 -1.65 5.33 29.10 0.16 -1.49 16 16 C -0.08 -1.67 4.37 -19.87 -0.09 -1.76 16 17 C -0.12 -2.47 9.68 22.27 0.22 -2.25 16 18 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 19 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 20 C -0.12 -2.81 9.38 22.27 0.21 -2.60 16 21 C -0.10 -2.31 5.88 -19.87 -0.12 -2.43 16 22 C 0.12 2.35 6.22 71.24 0.44 2.79 16 23 O -0.58 -11.28 12.14 -148.98 -1.81 -13.08 16 24 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 25 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 26 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.42 7.26 8.47 -92.71 -0.79 6.48 16 32 H 0.14 1.46 8.05 -2.39 -0.02 1.44 16 33 H 0.13 1.44 6.84 -2.38 -0.02 1.42 16 34 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.13 2.97 7.01 -2.91 -0.02 2.95 16 38 H 0.04 1.05 7.78 -2.39 -0.02 1.03 16 39 H 0.09 1.18 7.51 -2.39 -0.02 1.16 16 40 H 0.40 3.90 9.12 -74.06 -0.68 3.22 16 Total: -1.00 -77.36 340.65 0.89 -76.47 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -0.41 Total: 15.80 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 3.42 Total: -25.10 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -2.29 Total: -77.51 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.86 Total: -35.07 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -77.36 0.89 -76.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779764582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.357 kcal (2) G-P(sol) polarization free energy of solvation -77.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds