Wall clock time and date at job start Mon Mar 30 2020 01:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86800 * 119.99669 * 2 1 4 4 H 1.48501 * 109.46875 * 239.99863 * 3 2 1 5 5 H 1.48493 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47071 * 120.00467 * 3 2 1 7 7 C 1.38646 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00375 * 179.97438 * 7 2 1 9 9 O 1.34840 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.35742 * 117.00113 * 185.05152 * 9 7 2 11 11 C 1.38959 * 120.03130 * 174.48094 * 10 9 7 12 12 C 1.38130 * 120.08085 * 179.97438 * 11 10 9 13 13 C 1.38193 * 120.14017 * 0.02562 * 12 11 10 14 14 C 1.38966 * 120.06396 * 359.97438 * 13 12 11 15 15 N 1.39673 * 120.03828 * 180.28237 * 14 13 12 16 16 C 1.46505 * 120.00061 * 359.71879 * 15 14 13 17 17 C 1.53000 * 109.46826 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.46720 * 180.02562 * 17 16 15 19 19 H 1.09001 * 110.75123 * 57.02574 * 18 17 16 20 20 C 1.55311 * 110.84789 * 180.71694 * 18 17 16 21 21 C 1.54942 * 100.94488 * 152.32721 * 20 18 17 22 22 O 1.43651 * 105.13368 * 323.55737 * 21 20 18 23 23 C 1.43232 * 109.97062 * 24.42593 * 22 21 20 24 24 C 1.38727 * 120.03334 * 354.47065 * 10 9 7 25 25 H 0.97003 * 120.00000 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.96074 * 359.96856 * 11 10 9 27 27 H 1.07997 * 119.92969 * 180.02562 * 12 11 10 28 28 H 1.08001 * 119.96567 * 180.02562 * 13 12 11 29 29 H 0.97004 * 119.99751 * 179.73082 * 15 14 13 30 30 H 1.08990 * 109.47190 * 300.00489 * 16 15 14 31 31 H 1.09002 * 109.46750 * 60.00925 * 16 15 14 32 32 H 1.08993 * 109.47300 * 300.00618 * 17 16 15 33 33 H 1.09002 * 109.46794 * 60.00838 * 17 16 15 34 34 H 1.09003 * 111.12522 * 270.24431 * 20 18 17 35 35 H 1.09003 * 111.12292 * 34.40542 * 20 18 17 36 36 H 1.09004 * 110.31191 * 204.64250 * 21 20 18 37 37 H 1.08996 * 110.31248 * 82.46902 * 21 20 18 38 38 H 1.08999 * 109.83530 * 238.77346 * 23 22 21 39 39 H 1.09007 * 109.83247 * 117.80401 * 23 22 21 40 40 H 1.08004 * 120.07013 * 0.03579 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1076 11 6 1.4353 -4.7347 0.2295 12 6 2.1824 -5.8914 0.3380 13 6 3.5629 -5.8295 0.3261 14 6 4.2037 -4.6024 0.2044 15 7 5.5990 -4.5410 0.1866 16 6 6.3879 -5.7700 0.3024 17 6 7.8779 -5.4258 0.2562 18 6 8.7017 -6.7094 0.3765 19 1 8.4353 -7.4145 -0.4109 20 6 10.2224 -6.3946 0.3512 21 6 10.7826 -7.5836 1.1716 22 8 9.8042 -7.8274 2.1947 23 6 8.5228 -7.3487 1.7702 24 6 3.4556 -3.4386 0.0951 25 1 -0.4850 0.8401 0.0004 26 1 0.3566 -4.7865 0.2397 27 1 1.6867 -6.8462 0.4323 28 1 4.1443 -6.7357 0.4107 29 1 6.0456 -3.6845 0.0977 30 1 6.1580 -6.2616 1.2475 31 1 6.1432 -6.4379 -0.5236 32 1 8.1081 -4.9339 -0.6888 33 1 8.1223 -4.7581 1.0824 34 1 10.6087 -6.4040 -0.6681 35 1 10.4351 -5.4444 0.8411 36 1 11.7399 -7.3167 1.6194 37 1 10.8931 -8.4627 0.5367 38 1 8.1546 -6.6028 2.4746 39 1 7.8196 -8.1794 1.7084 40 1 3.9511 -2.4836 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783659018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:52 Heat of formation + Delta-G solvation = -55.934095 kcal Electronic energy + Delta-G solvation = -20546.815191 eV Core-core repulsion = 17326.771365 eV Total energy + Delta-G solvation = -3220.043826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.86329 -39.00955 -37.17704 -35.45398 -33.45500 -32.15864 -30.74110 -29.27461 -28.45778 -26.81878 -25.21319 -23.84205 -22.40301 -21.72319 -20.66555 -20.40690 -17.84922 -17.38672 -17.08704 -16.24258 -15.63541 -15.26207 -15.00188 -14.77636 -14.62364 -14.15903 -13.83010 -13.62048 -13.48162 -13.36261 -12.86196 -12.57577 -12.30128 -12.20528 -11.76735 -11.61997 -11.46737 -11.25805 -11.08559 -10.99551 -10.79492 -10.75614 -10.57265 -10.38694 -9.82894 -9.39404 -9.35790 -8.74078 -7.33249 -6.76428 -6.39280 -3.98674 2.40083 2.59047 3.14787 3.16642 3.18884 3.52607 3.73383 4.00846 4.05428 4.40883 4.54223 4.72143 4.77505 4.85955 4.97716 5.02568 5.17014 5.21903 5.35390 5.38720 5.39661 5.41748 5.53036 5.56597 5.72533 5.74320 5.87944 5.95443 6.00700 6.29765 6.37877 6.65583 6.66658 6.67975 7.05663 7.16822 7.40812 7.50720 7.68265 8.03392 8.06862 8.21299 9.06691 9.79539 10.79070 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.003219 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.889615 B = 8696.440378 C = 9714.282413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.389 4.389 8 H 0.090 0.910 9 O -0.178 6.178 10 C 0.189 3.811 11 C -0.236 4.236 12 C -0.040 4.040 13 C -0.280 4.280 14 C 0.248 3.752 15 N -0.756 5.756 16 C 0.130 3.870 17 C -0.121 4.121 18 C -0.118 4.118 19 H 0.089 0.911 20 C -0.152 4.152 21 C 0.050 3.950 22 O -0.387 6.387 23 C 0.052 3.948 24 C -0.302 4.302 25 H 0.269 0.731 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.394 0.606 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.502 -11.846 0.138 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.107 0.893 9 O -0.081 6.081 10 C 0.135 3.865 11 C -0.257 4.257 12 C -0.059 4.059 13 C -0.302 4.302 14 C 0.147 3.853 15 N -0.388 5.388 16 C 0.006 3.994 17 C -0.158 4.158 18 C -0.137 4.137 19 H 0.107 0.893 20 C -0.190 4.190 21 C -0.026 4.026 22 O -0.306 6.306 23 C -0.024 4.024 24 C -0.326 4.326 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.228 0.772 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.155 -11.914 0.331 21.718 hybrid contribution 0.655 1.254 -0.298 1.446 sum 18.810 -10.659 0.032 21.620 Atomic orbital electron populations 1.70034 1.05908 1.27617 1.46469 1.25265 0.95814 0.98740 0.96732 0.85808 0.78698 0.79995 0.79051 1.19622 1.20320 1.19597 1.21246 0.91692 0.80916 1.52728 0.89272 1.83987 1.34225 1.11460 1.78473 1.19070 0.89507 0.87847 0.90122 1.20048 0.99370 0.90359 1.15882 1.20379 0.93002 0.96529 0.96018 1.20068 0.94447 0.95041 1.20691 1.17462 0.82223 0.93576 0.92071 1.44507 1.02939 1.07805 1.83570 1.21193 0.89338 0.88092 1.00821 1.21738 0.94124 0.96782 1.03205 1.22674 0.95095 0.97806 0.98161 0.89311 1.23333 0.94657 0.99498 1.01520 1.23364 0.92706 0.96716 0.89838 1.88408 1.18125 1.82738 1.41355 1.23297 0.85772 0.98529 0.94833 1.20502 0.93752 0.97165 1.21191 0.92071 0.86904 0.87200 0.87922 0.77212 0.92657 0.92706 0.90788 0.90917 0.89794 0.90106 0.89817 0.92208 0.90823 0.91187 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.74 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 7 C -0.39 -11.07 9.49 30.88 0.29 -10.78 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 9 O -0.18 -5.21 9.76 0.05 0.00 -5.21 16 10 C 0.19 4.72 6.64 -39.13 -0.26 4.46 16 11 C -0.24 -5.21 9.99 -39.35 -0.39 -5.60 16 12 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 13 C -0.28 -5.04 9.31 -39.33 -0.37 -5.41 16 14 C 0.25 4.68 6.65 -83.81 -0.56 4.12 16 15 N -0.76 -11.07 5.73 -58.65 -0.34 -11.40 16 16 C 0.13 1.46 4.76 -4.04 -0.02 1.44 16 17 C -0.12 -1.01 4.72 -26.73 -0.13 -1.14 16 18 C -0.12 -0.89 3.03 -88.68 -0.27 -1.16 16 19 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 20 C -0.15 -1.00 6.62 -24.48 -0.16 -1.16 16 21 C 0.05 0.37 7.78 38.18 0.30 0.67 16 22 O -0.39 -4.07 11.36 -35.23 -0.40 -4.47 16 23 C 0.05 0.47 6.57 37.88 0.25 0.72 16 24 C -0.30 -6.75 9.01 -39.20 -0.35 -7.10 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.11 2.42 8.06 -52.49 -0.42 1.99 16 27 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.10 1.59 6.72 -52.49 -0.35 1.23 16 29 H 0.39 5.32 8.48 -40.82 -0.35 4.97 16 30 H 0.06 0.63 7.29 -51.93 -0.38 0.25 16 31 H 0.05 0.62 7.94 -51.93 -0.41 0.21 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.53 8.04 -51.93 -0.42 0.12 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.68 7.73 -51.93 -0.40 0.28 16 39 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.12 2.76 5.64 -52.48 -0.30 2.46 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -32.15 329.87 -8.00 -40.15 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.81 Total: 6.35 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -2.16 Total: -21.12 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.42 Total: -36.38 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.40 Total: -9.68 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.15 -8.00 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783659018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.783 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds