Wall clock time and date at job start Mon Mar 30 2020 01:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00153 * 2 1 4 4 H 1.48505 * 109.47237 * 270.00242 * 3 2 1 5 5 H 1.48508 * 109.47091 * 29.99667 * 3 2 1 6 6 H 1.48501 * 109.47541 * 149.99913 * 3 2 1 7 7 C 1.37877 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99735 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00735 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47801 * 180.02562 * 9 7 2 11 11 O 1.45195 * 109.47586 * 180.02562 * 10 9 7 12 12 C 1.34225 * 117.00464 * 180.02562 * 11 10 9 13 13 O 1.20826 * 119.99629 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00297 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47119 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47226 * 180.02562 * 15 14 12 17 17 C 1.50693 * 109.47086 * 179.97438 * 16 15 14 18 18 C 1.38126 * 120.03914 * 264.99749 * 17 16 15 19 19 C 1.38272 * 120.07563 * 179.74621 * 18 17 16 20 20 C 1.38309 * 120.14681 * 0.25962 * 19 18 17 21 21 C 1.38076 * 120.07557 * 359.97438 * 20 19 18 22 22 C 1.38897 * 120.04058 * 85.25746 * 17 16 15 23 23 N 1.39675 * 120.07023 * 0.02562 * 22 17 16 24 24 H 0.96996 * 120.00294 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46746 * 60.00256 * 9 7 2 26 26 H 1.09003 * 109.47273 * 300.01161 * 9 7 2 27 27 H 1.08996 * 109.46950 * 59.99895 * 10 9 7 28 28 H 1.09007 * 109.46983 * 300.00453 * 10 9 7 29 29 H 1.08996 * 109.46754 * 60.00263 * 14 12 11 30 30 H 1.08998 * 109.47183 * 299.99951 * 14 12 11 31 31 H 1.08999 * 109.47340 * 59.99961 * 15 14 12 32 32 H 1.08998 * 109.47242 * 300.00146 * 15 14 12 33 33 H 1.08996 * 109.46732 * 60.00441 * 16 15 14 34 34 H 1.08998 * 109.47098 * 300.00195 * 16 15 14 35 35 H 1.08002 * 119.96463 * 0.03173 * 18 17 16 36 36 H 1.07996 * 119.92194 * 180.23481 * 19 18 17 37 37 H 1.07997 * 119.95926 * 179.97438 * 20 19 18 38 38 H 1.08006 * 120.03471 * 180.02562 * 21 20 19 39 39 H 0.96998 * 120.00171 * 180.23333 * 23 22 17 40 40 H 0.96996 * 120.00284 * 0.23158 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 8 5.4735 -2.6365 0.0001 12 6 6.0830 -3.8324 -0.0003 13 8 5.4249 -4.8457 -0.0002 14 6 7.5879 -3.9112 -0.0009 15 6 8.0218 -5.3784 -0.0006 16 6 9.5497 -5.4585 -0.0005 17 6 9.9770 -6.9036 0.0003 18 6 10.2730 -7.5364 1.1919 19 6 10.6600 -8.8638 1.1940 20 6 10.7573 -9.5609 0.0034 21 6 10.4675 -8.9331 -1.1917 22 6 10.0788 -7.5993 -1.1975 23 7 9.7860 -6.9608 -2.4048 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8746 -0.6807 -0.8904 27 1 3.6579 -3.1505 -0.8896 28 1 3.6585 -3.1502 0.8903 29 1 7.9779 -3.4173 0.8891 30 1 7.9773 -3.4170 -0.8909 31 1 7.6317 -5.8728 -0.8903 32 1 7.6324 -5.8723 0.8896 33 1 9.9393 -4.9643 0.8894 34 1 9.9394 -4.9645 -0.8906 35 1 10.1976 -6.9951 2.1234 36 1 10.8872 -9.3572 2.1274 37 1 11.0603 -10.5975 0.0086 38 1 10.5433 -9.4782 -2.1210 39 1 9.8541 -7.4485 -3.2404 40 1 9.5144 -6.0296 -2.4076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798683167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:53 Heat of formation + Delta-G solvation = -108.993309 kcal Electronic energy + Delta-G solvation = -20076.860696 eV Core-core repulsion = 16854.516050 eV Total energy + Delta-G solvation = -3222.344646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47201 -40.43414 -37.88625 -35.99883 -35.40172 -35.11070 -32.90220 -32.10407 -29.67382 -28.28810 -26.91699 -24.10702 -23.14274 -22.62125 -21.72301 -21.38251 -19.24327 -18.35716 -18.05676 -17.85364 -17.66490 -17.23541 -16.34528 -16.20091 -15.93056 -15.03423 -14.91560 -14.77656 -14.62608 -14.48180 -14.33101 -13.84803 -13.36955 -13.16355 -13.14042 -12.89840 -12.52185 -12.47391 -12.40561 -12.13254 -11.81559 -11.70286 -11.65574 -11.55997 -11.45395 -11.39304 -11.36823 -10.82206 -9.60102 -8.35338 -8.31943 -6.43994 0.56473 0.79776 1.22982 1.37907 1.39978 1.52794 1.79101 2.33996 2.99380 3.01325 3.10939 3.68231 3.81565 3.96051 4.13016 4.16330 4.18985 4.22686 4.38997 4.48767 4.53770 4.63236 4.66634 4.71770 4.77717 4.83062 5.03655 5.07167 5.16198 5.24508 5.27856 5.40303 5.49728 5.50980 5.62328 5.73235 5.82636 6.10886 6.14354 6.62092 6.67024 6.76908 7.01644 7.21197 8.80848 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043548 B = 0.002445 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.820592 B =11448.901457 C =11493.674087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.243 1.243 7 C -0.545 4.545 8 H 0.032 0.968 9 C -0.003 4.003 10 C 0.093 3.907 11 O -0.363 6.363 12 C 0.448 3.552 13 O -0.551 6.551 14 C -0.104 4.104 15 C -0.097 4.097 16 C -0.063 4.063 17 C -0.177 4.177 18 C -0.081 4.081 19 C -0.194 4.194 20 C -0.085 4.085 21 C -0.215 4.215 22 C 0.209 3.791 23 N -0.872 5.872 24 H 0.271 0.729 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.404 0.596 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.322 -12.811 -1.704 31.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.166 1.166 7 C -0.582 4.582 8 H 0.051 0.949 9 C -0.040 4.040 10 C 0.019 3.981 11 O -0.279 6.279 12 C 0.293 3.707 13 O -0.442 6.442 14 C -0.141 4.141 15 C -0.135 4.135 16 C -0.100 4.100 17 C -0.181 4.181 18 C -0.100 4.100 19 C -0.214 4.214 20 C -0.104 4.104 21 C -0.238 4.238 22 C 0.103 3.897 23 N -0.412 5.412 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.233 0.767 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 27.938 -12.993 -1.689 30.858 hybrid contribution -0.916 0.350 -0.331 1.035 sum 27.023 -12.643 -2.020 29.902 Atomic orbital electron populations 1.70043 1.08391 1.28674 1.51321 1.25999 0.95715 1.03733 0.93372 0.85565 0.79536 0.77430 0.79589 1.18697 1.20620 1.16579 1.21131 0.90858 0.93729 1.52529 0.94921 1.19458 0.94057 0.91987 0.98540 1.22890 0.74693 0.99714 1.00796 1.86476 1.24049 1.34067 1.83338 1.24870 0.94072 0.80614 0.71102 1.90647 1.68747 1.37604 1.47218 1.21607 0.83803 1.00243 1.08425 1.21347 0.95998 0.93472 1.02635 1.20363 0.93173 0.92095 1.04363 1.19540 1.09000 0.97426 0.92181 1.21109 0.96483 0.94983 0.97411 1.21155 1.06352 0.95238 0.98676 1.21152 0.97059 1.00137 0.92056 1.20828 1.09614 0.93875 0.99450 1.17840 0.93036 0.91923 0.86901 1.42574 1.77825 1.15448 1.05399 0.92032 0.94550 0.94614 0.92775 0.92860 0.85030 0.84796 0.92581 0.92675 0.89087 0.89761 0.85048 0.85274 0.84723 0.85245 0.76660 0.76723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.95 13.96 21.45 0.30 -58.66 16 2 C 0.01 0.57 5.47 84.66 0.46 1.03 16 3 Si 0.96 43.21 27.47 68.60 1.88 45.09 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 7 C -0.54 -31.78 9.66 25.60 0.25 -31.53 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 9 C 0.00 -0.14 4.42 29.84 0.13 -0.01 16 10 C 0.09 4.01 5.40 71.98 0.39 4.40 16 11 O -0.36 -13.05 10.22 -51.37 -0.53 -13.57 16 12 C 0.45 13.98 7.96 71.24 0.57 14.54 16 13 O -0.55 -21.37 15.73 21.96 0.35 -21.02 16 14 C -0.10 -1.85 5.81 29.85 0.17 -1.68 16 15 C -0.10 -1.77 4.49 30.59 0.14 -1.63 16 16 C -0.06 -0.83 4.79 29.85 0.14 -0.68 16 17 C -0.18 -3.05 5.15 -19.74 -0.10 -3.15 16 18 C -0.08 -1.40 9.67 22.25 0.22 -1.18 16 19 C -0.19 -3.24 10.04 22.29 0.22 -3.02 16 20 C -0.09 -1.38 10.04 22.25 0.22 -1.16 16 21 C -0.21 -3.59 9.90 22.40 0.22 -3.37 16 22 C 0.21 3.58 6.74 38.21 0.26 3.84 16 23 N -0.87 -10.92 8.99 -51.37 -0.46 -11.38 16 24 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 25 H 0.04 1.67 7.20 -2.38 -0.02 1.66 16 26 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 27 H 0.05 2.41 8.13 -2.39 -0.02 2.39 16 28 H 0.05 2.39 8.13 -2.38 -0.02 2.37 16 29 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.20 8.10 -2.39 -0.02 1.19 16 32 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 33 H 0.09 0.95 8.05 -2.39 -0.02 0.93 16 34 H 0.08 0.82 6.80 -2.39 -0.02 0.81 16 35 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.40 3.71 8.84 -92.71 -0.82 2.89 16 40 H 0.40 4.28 6.93 -92.71 -0.64 3.63 16 Total: -1.00 -73.56 339.33 4.36 -69.20 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.47 Total: 13.95 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 3.29 Total: -23.61 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -0.16 Total: -70.04 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.18 Total: -34.59 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.09 kcal Total: -73.56 4.36 -69.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798683167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.794 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds