Wall clock time and date at job start Mon Mar 30 2020 01:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99849 * 2 1 4 4 H 1.48503 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47307 * 300.00041 * 3 2 1 6 6 H 1.48501 * 109.47131 * 60.00011 * 3 2 1 7 7 C 1.37874 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47079 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47131 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47185 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47096 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00130 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99728 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99761 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47033 * 179.97438 * 16 15 13 18 18 C 1.38158 * 120.02768 * 259.99936 * 17 16 15 19 19 C 1.38250 * 120.05410 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.11168 * 359.97438 * 19 18 17 21 21 C 1.38125 * 120.05855 * 359.97438 * 20 19 18 22 22 C 1.38711 * 120.02445 * 79.95997 * 17 16 15 23 23 O 1.35901 * 120.05828 * 0.03985 * 22 17 16 24 24 H 0.97001 * 120.00180 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47072 * 59.99913 * 9 7 2 26 26 H 1.08996 * 109.46691 * 299.99767 * 9 7 2 27 27 H 1.09004 * 109.47283 * 59.99431 * 10 9 7 28 28 H 1.09002 * 109.46958 * 299.99843 * 10 9 7 29 29 H 1.09000 * 109.46947 * 59.99833 * 11 10 9 30 30 H 1.08996 * 109.46765 * 299.99719 * 11 10 9 31 31 H 1.09004 * 109.46980 * 59.99705 * 12 11 10 32 32 H 1.09002 * 109.47206 * 300.00150 * 12 11 10 33 33 H 0.96992 * 120.00298 * 359.97438 * 15 13 12 34 34 H 1.09000 * 109.46904 * 59.99935 * 16 15 13 35 35 H 1.09002 * 109.47269 * 299.99902 * 16 15 13 36 36 H 1.08004 * 119.97750 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.94133 * 179.97438 * 19 18 17 38 38 H 1.07997 * 119.97275 * 180.02562 * 20 19 18 39 39 H 1.07994 * 120.03307 * 179.73079 * 21 20 19 40 40 H 0.96701 * 113.99785 * 269.95941 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4746 -6.1500 -0.0024 13 6 1.7211 -7.4550 -0.0023 14 8 0.5083 -7.4551 -0.0024 15 7 2.3951 -8.6223 -0.0021 16 6 1.6626 -9.8910 -0.0025 17 6 2.6420 -11.0364 -0.0028 18 6 2.9335 -11.6965 -1.1810 19 6 3.8315 -12.7477 -1.1817 20 6 4.4404 -13.1408 -0.0041 21 6 4.1531 -12.4835 1.1763 22 6 3.2521 -11.4283 1.1797 23 8 2.9669 -10.7805 2.3399 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6241 -2.5575 0.8880 27 1 2.8714 -3.6046 0.8890 28 1 2.8726 -3.6038 -0.8910 29 1 0.8541 -5.0447 -0.8923 30 1 0.8534 -5.0449 0.8877 31 1 3.1013 -6.0925 0.8877 32 1 3.1013 -6.0919 -0.8923 33 1 3.3651 -8.6222 -0.0023 34 1 1.0364 -9.9487 -0.8928 35 1 1.0356 -9.9489 0.8872 36 1 2.4589 -11.3917 -2.1020 37 1 4.0577 -13.2627 -2.1037 38 1 5.1418 -13.9620 -0.0074 39 1 4.6256 -12.7936 2.0965 40 1 3.5457 -10.0277 2.5225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806717314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:33 Heat of formation + Delta-G solvation = -108.256719 kcal Electronic energy + Delta-G solvation = -20018.335622 eV Core-core repulsion = 16796.022917 eV Total energy + Delta-G solvation = -3222.312705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.21399 -40.36643 -37.59985 -36.71906 -35.96020 -34.60366 -32.60943 -31.37403 -30.72036 -28.01213 -26.55228 -24.06003 -23.57286 -22.41726 -21.80131 -21.29286 -19.29911 -18.42066 -18.10994 -17.15176 -17.09267 -16.80913 -16.65639 -16.47898 -15.84986 -15.56925 -14.87846 -14.78195 -14.54024 -14.22588 -13.95120 -13.57846 -13.47197 -13.29535 -13.15870 -12.95229 -12.83494 -12.40280 -12.30222 -12.14228 -12.12480 -11.40627 -11.36835 -11.35496 -11.16177 -10.85600 -10.55389 -10.15905 -9.89336 -9.58707 -8.18311 -6.30465 0.16939 0.32843 1.40765 1.41811 1.55262 1.65415 2.21135 2.42396 2.75332 3.14408 3.28430 3.60170 3.85840 3.87570 4.07791 4.15394 4.17306 4.30868 4.50931 4.57276 4.66157 4.70881 4.73290 4.85573 4.89261 4.91638 5.01455 5.20536 5.32707 5.34439 5.39449 5.42603 5.49403 5.53355 5.58406 5.79101 5.88339 5.88973 6.25820 6.53806 6.78668 6.88409 7.26481 7.39193 8.94168 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042405 B = 0.002314 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.145707 B =12099.330259 C =12192.630198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.097 4.097 12 C -0.126 4.126 13 C 0.512 3.488 14 O -0.589 6.589 15 N -0.711 5.711 16 C 0.169 3.831 17 C -0.145 4.145 18 C -0.091 4.091 19 C -0.132 4.132 20 C -0.095 4.095 21 C -0.156 4.156 22 C 0.112 3.888 23 O -0.510 6.510 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.415 0.585 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.671 -28.944 -0.647 32.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.166 4.166 13 C 0.300 3.700 14 O -0.469 6.469 15 N -0.364 5.364 16 C 0.046 3.954 17 C -0.146 4.146 18 C -0.110 4.110 19 C -0.150 4.150 20 C -0.113 4.113 21 C -0.175 4.175 22 C 0.067 3.933 23 O -0.323 6.323 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.252 0.748 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.159 0.841 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 13.229 -29.262 -0.586 32.119 hybrid contribution 0.260 1.391 0.100 1.419 sum 13.489 -27.871 -0.486 30.968 Atomic orbital electron populations 1.70141 1.08088 1.27674 1.52005 1.26114 0.95803 1.03812 0.94857 0.85319 0.79206 0.78365 0.77651 1.18022 1.20497 1.20517 1.21784 0.93757 0.92175 1.50015 0.91511 1.19076 0.94745 0.93898 0.94293 1.21444 0.97778 0.92657 1.01373 1.21254 0.97548 0.93735 1.00988 1.21668 0.98870 0.89207 1.06818 1.21251 0.87753 0.86620 0.74372 1.90708 1.16619 1.88336 1.51228 1.45904 1.10867 1.04284 1.75378 1.19910 0.92875 0.80701 1.01927 1.20137 1.01180 0.99315 0.93928 1.21248 0.97237 0.95436 0.97056 1.21504 0.96789 0.97085 0.99630 1.21459 0.98902 0.99298 0.91607 1.21676 0.98461 0.97189 1.00150 1.18533 0.95518 0.94533 0.84695 1.84784 1.60925 1.48833 1.37763 0.92876 0.99751 0.99757 0.91982 0.92008 0.93953 0.93944 0.86121 0.86267 0.74807 0.91545 0.92309 0.84530 0.83266 0.82995 0.84079 0.73540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.47 13.29 21.45 0.28 -59.19 16 2 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.02 0.94 4.97 29.85 0.15 1.09 16 10 C -0.10 -3.88 5.15 30.59 0.16 -3.72 16 11 C -0.10 -3.52 4.50 30.60 0.14 -3.38 16 12 C -0.13 -3.04 5.70 29.85 0.17 -2.87 16 13 C 0.51 13.82 7.83 87.65 0.69 14.51 16 14 O -0.59 -22.45 15.98 -3.04 -0.05 -22.50 16 15 N -0.71 -13.21 5.55 -466.77 -2.59 -15.80 16 16 C 0.17 3.41 5.46 85.63 0.47 3.88 16 17 C -0.14 -2.27 5.26 -19.77 -0.10 -2.37 16 18 C -0.09 -1.15 9.66 22.25 0.22 -0.94 16 19 C -0.13 -1.25 10.04 22.28 0.22 -1.03 16 20 C -0.09 -0.85 10.04 22.25 0.22 -0.63 16 21 C -0.16 -1.84 9.99 22.37 0.22 -1.62 16 22 C 0.11 1.70 6.68 22.51 0.15 1.85 16 23 O -0.51 -8.10 12.74 -92.44 -1.18 -9.27 16 24 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 25 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 30 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.42 4.86 8.46 -92.71 -0.78 4.07 16 34 H 0.07 1.44 8.00 -2.39 -0.02 1.42 16 35 H 0.06 1.46 7.86 -2.39 -0.02 1.44 16 36 H 0.14 1.45 8.04 -2.91 -0.02 1.42 16 37 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 39 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.41 3.23 9.06 -74.06 -0.67 2.56 16 Total: -1.00 -79.70 344.98 1.48 -78.22 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -0.42 Total: 7.99 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 3.40 Total: -26.46 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -2.31 Total: -74.98 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.23 Total: -31.77 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -79.70 1.48 -78.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806717314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.033 kcal (2) G-P(sol) polarization free energy of solvation -79.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds