Wall clock time and date at job start Mon Mar 30 2020 01:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 11 11 O 1.42896 * 109.47156 * 59.72527 * 9 7 2 12 12 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 13 13 N 1.46896 * 109.47026 * 179.97438 * 12 9 7 14 14 C 1.47015 * 111.00560 * 293.63681 * 13 12 9 15 15 C 1.53090 * 109.25937 * 177.60601 * 14 13 12 16 16 O 1.43018 * 109.26006 * 56.85133 * 15 14 13 17 17 C 1.43012 * 113.73643 * 301.32743 * 16 15 14 18 18 H 1.09003 * 109.50838 * 298.73523 * 17 16 15 19 19 C 1.50702 * 109.54400 * 178.62489 * 17 16 15 20 20 C 1.38233 * 119.99930 * 324.92203 * 19 17 16 21 21 C 1.38237 * 119.99896 * 179.74021 * 20 19 17 22 22 C 1.38234 * 120.00044 * 0.53209 * 21 20 19 23 23 C 1.38231 * 119.99787 * 359.74903 * 22 21 20 24 24 C 1.38234 * 120.00169 * 145.19433 * 19 17 16 25 25 C 1.47012 * 110.99825 * 169.99764 * 13 12 9 26 26 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 27 27 H 0.96701 * 114.00155 * 59.99751 * 11 9 7 28 28 H 1.09000 * 109.46986 * 300.00089 * 12 9 7 29 29 H 1.09002 * 109.46857 * 60.00224 * 12 9 7 30 30 H 1.09000 * 109.50584 * 297.54453 * 14 13 12 31 31 H 1.09001 * 109.49958 * 57.67070 * 14 13 12 32 32 H 1.09000 * 109.50892 * 296.91546 * 15 14 13 33 33 H 1.08997 * 109.50559 * 176.78449 * 15 14 13 34 34 H 1.07997 * 119.99943 * 0.02562 * 20 19 17 35 35 H 1.08001 * 119.99953 * 180.29436 * 21 20 19 36 36 H 1.07999 * 119.99883 * 179.76354 * 22 21 20 37 37 H 1.07998 * 119.99829 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.99916 * 0.02562 * 24 19 17 39 39 H 1.08999 * 109.51022 * 302.33314 * 25 13 12 40 40 H 1.09008 * 109.50292 * 62.46588 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6283 -2.5592 0.8921 11 8 0.4241 -2.5719 -1.1637 12 6 2.2451 -3.6621 -0.0081 13 7 1.5106 -4.9343 -0.0075 14 6 0.7767 -5.1184 1.2530 15 6 -0.0200 -6.4240 1.1873 16 8 0.8726 -7.5083 0.9172 17 6 1.6033 -7.3620 -0.3034 18 1 0.9076 -7.3228 -1.1416 19 6 2.5347 -8.5339 -0.4769 20 6 3.1388 -9.1061 0.6270 21 6 3.9890 -10.1845 0.4683 22 6 4.2437 -10.6838 -0.7953 23 6 3.6441 -10.1080 -1.8997 24 6 2.7894 -9.0332 -1.7405 25 6 2.4165 -6.0658 -0.2529 26 1 -0.4851 0.8401 0.0004 27 1 0.9124 -2.5243 -1.9970 28 1 2.8677 -3.6020 -0.9008 29 1 2.8758 -3.6067 0.8792 30 1 1.4829 -5.1643 2.0820 31 1 0.0936 -4.2822 1.4018 32 1 -0.7629 -6.3575 0.3925 33 1 -0.5204 -6.5934 2.1407 34 1 2.9430 -8.7134 1.6138 35 1 4.4573 -10.6345 1.3312 36 1 4.9109 -11.5239 -0.9196 37 1 3.8428 -10.4983 -2.8869 38 1 2.3212 -8.5832 -2.6035 39 1 2.9304 -5.9212 -1.2033 40 1 3.1490 -6.1268 0.5521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809571905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:00 Heat of formation + Delta-G solvation = -63.025647 kcal Electronic energy + Delta-G solvation = -21511.190802 eV Core-core repulsion = 18290.839463 eV Total energy + Delta-G solvation = -3220.351339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98925 -38.57635 -36.36203 -34.31890 -32.77790 -32.08506 -30.97504 -29.45758 -28.93670 -26.36540 -24.27004 -23.70905 -22.63449 -21.70340 -20.36492 -19.82503 -17.30435 -16.88380 -16.17225 -15.77331 -15.39714 -14.95110 -14.74539 -14.52134 -14.41993 -14.19998 -13.94450 -13.43196 -13.30714 -13.15997 -12.79676 -12.63026 -12.28106 -11.62306 -11.32801 -11.19269 -11.11839 -11.03747 -10.91600 -10.84953 -10.53514 -10.35911 -10.04747 -9.59482 -9.03230 -8.99130 -8.75055 -8.58825 -8.11571 -7.74290 -6.02001 -4.20589 1.22521 1.33040 3.26422 3.33521 3.35948 3.61039 3.88119 4.23006 4.42917 4.79519 4.85649 4.91570 5.06251 5.12735 5.25519 5.26421 5.34500 5.43556 5.48804 5.53806 5.63025 5.76321 5.87738 5.94151 6.00617 6.04175 6.15317 6.22352 6.30479 6.36983 6.42358 6.50265 6.55796 6.77404 6.90247 7.28084 7.43733 7.49981 7.74774 7.84767 8.18058 8.83085 9.44542 9.60685 11.02037 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.003625 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.713244 B = 7723.285332 C = 8056.334203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.238 3.762 10 H 0.054 0.946 11 O -0.554 6.554 12 C 0.031 3.969 13 N -0.524 5.524 14 C 0.018 3.982 15 C 0.066 3.934 16 O -0.383 6.383 17 C 0.136 3.864 18 H 0.075 0.925 19 C -0.076 4.076 20 C -0.093 4.093 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.108 4.108 25 C 0.030 3.970 26 H 0.260 0.740 27 H 0.343 0.657 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 -18.550 -0.639 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.614 4.614 8 H 0.072 0.928 9 C 0.180 3.820 10 H 0.072 0.928 11 O -0.356 6.356 12 C -0.096 4.096 13 N -0.249 5.249 14 C -0.110 4.110 15 C -0.010 4.010 16 O -0.302 6.302 17 C 0.078 3.922 18 H 0.093 0.907 19 C -0.077 4.077 20 C -0.111 4.111 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.098 4.098 26 H 0.070 0.930 27 H 0.186 0.814 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.412 -18.620 -0.423 19.140 hybrid contribution 1.639 1.290 0.177 2.093 sum 6.052 -17.330 -0.246 18.358 Atomic orbital electron populations 1.70080 1.05898 1.26426 1.46955 1.25017 0.94696 0.99077 0.93824 0.86670 0.79939 0.83512 0.78235 1.20489 1.21101 1.19889 1.21648 0.93150 0.91605 1.54983 0.92753 1.19309 0.87680 0.88455 0.86577 0.92819 1.86553 1.37717 1.96289 1.14993 1.23121 0.97323 0.89475 0.99700 1.62256 1.27441 1.01883 1.33328 1.22789 0.98459 0.98991 0.90796 1.22692 0.91580 0.85303 1.01452 1.87915 1.57245 1.44501 1.40583 1.20875 0.91930 0.91315 0.88126 0.90692 1.19664 0.97695 0.96615 0.93703 1.21042 0.95484 0.95555 0.99004 1.21167 0.98804 0.97012 0.97326 1.21151 1.00018 1.00063 0.92857 1.21080 0.97663 0.96568 0.98780 1.20992 0.98661 0.96471 0.96530 1.22715 0.94604 0.90948 1.01554 0.92977 0.81422 0.91715 0.95433 0.94784 0.88533 0.92072 0.88637 0.85606 0.86158 0.86279 0.86006 0.85762 0.90116 0.94664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.22 12.83 55.43 0.71 -24.51 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.58 -15.70 8.76 -34.44 -0.30 -16.00 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.24 5.96 2.71 -27.88 -0.08 5.88 16 10 H 0.05 1.47 6.52 -51.93 -0.34 1.13 16 11 O -0.55 -14.29 12.58 -35.23 -0.44 -14.74 16 12 C 0.03 0.64 4.56 -3.83 -0.02 0.63 16 13 N -0.52 -9.59 4.59 -234.31 -1.08 -10.67 16 14 C 0.02 0.31 5.44 -3.71 -0.02 0.29 16 15 C 0.07 0.97 7.01 37.20 0.26 1.23 16 16 O -0.38 -5.81 9.62 -35.23 -0.34 -6.15 16 17 C 0.14 1.94 3.01 -27.83 -0.08 1.86 16 18 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 19 C -0.08 -0.98 5.01 -104.62 -0.52 -1.51 16 20 C -0.09 -1.14 9.35 -39.58 -0.37 -1.51 16 21 C -0.13 -1.31 10.05 -39.58 -0.40 -1.70 16 22 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 23 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 24 C -0.11 -1.22 9.68 -39.58 -0.38 -1.60 16 25 C 0.03 0.48 4.91 -3.71 -0.02 0.46 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.34 7.98 9.04 45.56 0.41 8.39 16 28 H 0.06 1.30 8.04 -51.93 -0.42 0.89 16 29 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 1.83 6.38 -51.93 -0.33 1.50 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.13 1.57 7.63 -52.49 -0.40 1.17 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 40 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -30.78 329.19 -9.29 -40.07 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.26 Total: 8.04 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.82 Total: -13.04 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.37 Total: -35.18 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.78 Total: -20.88 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.78 -9.29 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.960 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds