Wall clock time and date at job start Mon Mar 30 2020 01:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 11 11 O 1.42896 * 109.47156 * 59.72527 * 9 7 2 12 12 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 13 13 N 1.46896 * 109.47026 * 179.97438 * 12 9 7 14 14 C 1.47015 * 111.00560 * 293.63681 * 13 12 9 15 15 C 1.53090 * 109.25937 * 177.60601 * 14 13 12 16 16 O 1.43018 * 109.26006 * 56.85133 * 15 14 13 17 17 C 1.43012 * 113.73643 * 301.32743 * 16 15 14 18 18 H 1.09003 * 109.50838 * 298.73523 * 17 16 15 19 19 C 1.50702 * 109.54400 * 178.62489 * 17 16 15 20 20 C 1.38233 * 119.99930 * 324.92203 * 19 17 16 21 21 C 1.38237 * 119.99896 * 179.74021 * 20 19 17 22 22 C 1.38234 * 120.00044 * 0.53209 * 21 20 19 23 23 C 1.38231 * 119.99787 * 359.74903 * 22 21 20 24 24 C 1.38234 * 120.00169 * 145.19433 * 19 17 16 25 25 C 1.47012 * 110.99825 * 169.99764 * 13 12 9 26 26 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 27 27 H 0.96701 * 114.00155 * 59.99751 * 11 9 7 28 28 H 1.09000 * 109.46986 * 300.00089 * 12 9 7 29 29 H 1.09002 * 109.46857 * 60.00224 * 12 9 7 30 30 H 1.09000 * 109.50584 * 297.54453 * 14 13 12 31 31 H 1.09001 * 109.49958 * 57.67070 * 14 13 12 32 32 H 1.09000 * 109.50892 * 296.91546 * 15 14 13 33 33 H 1.08997 * 109.50559 * 176.78449 * 15 14 13 34 34 H 1.07997 * 119.99943 * 0.02562 * 20 19 17 35 35 H 1.08001 * 119.99953 * 180.29436 * 21 20 19 36 36 H 1.07999 * 119.99883 * 179.76354 * 22 21 20 37 37 H 1.07998 * 119.99829 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.99916 * 0.02562 * 24 19 17 39 39 H 1.08999 * 109.51022 * 302.33314 * 25 13 12 40 40 H 1.09008 * 109.50292 * 62.46588 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6283 -2.5592 0.8921 11 8 0.4241 -2.5719 -1.1637 12 6 2.2451 -3.6621 -0.0081 13 7 1.5106 -4.9343 -0.0075 14 6 0.7767 -5.1184 1.2530 15 6 -0.0200 -6.4240 1.1873 16 8 0.8726 -7.5083 0.9172 17 6 1.6033 -7.3620 -0.3034 18 1 0.9076 -7.3228 -1.1416 19 6 2.5347 -8.5339 -0.4769 20 6 3.1388 -9.1061 0.6270 21 6 3.9890 -10.1845 0.4683 22 6 4.2437 -10.6838 -0.7953 23 6 3.6441 -10.1080 -1.8997 24 6 2.7894 -9.0332 -1.7405 25 6 2.4165 -6.0658 -0.2529 26 1 -0.4851 0.8401 0.0004 27 1 0.9124 -2.5243 -1.9970 28 1 2.8677 -3.6020 -0.9008 29 1 2.8758 -3.6067 0.8792 30 1 1.4829 -5.1643 2.0820 31 1 0.0936 -4.2822 1.4018 32 1 -0.7629 -6.3575 0.3925 33 1 -0.5204 -6.5934 2.1407 34 1 2.9430 -8.7134 1.6138 35 1 4.4573 -10.6345 1.3312 36 1 4.9109 -11.5239 -0.9196 37 1 3.8428 -10.4983 -2.8869 38 1 2.3212 -8.5832 -2.6035 39 1 2.9304 -5.9212 -1.2033 40 1 3.1490 -6.1268 0.5521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809571905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:00 Heat of formation + Delta-G solvation = -84.594305 kcal Electronic energy + Delta-G solvation = -21512.126089 eV Core-core repulsion = 18290.839463 eV Total energy + Delta-G solvation = -3221.286626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11141 -39.61126 -38.05911 -35.98592 -34.22048 -33.80053 -31.77905 -30.84662 -30.41671 -28.02207 -25.74306 -25.12636 -23.50954 -22.98631 -21.76730 -21.22308 -19.12681 -18.00917 -17.35628 -16.99113 -16.69693 -16.53428 -16.33715 -16.23378 -15.69445 -15.37158 -15.17328 -14.93046 -14.65435 -14.37140 -14.21190 -13.72737 -13.44637 -13.19025 -12.92637 -12.81692 -12.79316 -12.55694 -12.33154 -12.06054 -11.98110 -11.88090 -11.49685 -11.07750 -10.75529 -10.69794 -10.12794 -9.80575 -9.63504 -9.27525 -8.14257 -6.40495 0.38691 0.51961 1.40321 1.40539 1.51411 2.37058 2.62314 2.82177 2.99146 3.12043 3.77515 3.88170 3.99103 4.01123 4.09772 4.20106 4.21240 4.23822 4.32214 4.37857 4.50239 4.57374 4.62624 4.64818 4.71343 4.79188 4.82512 4.94731 4.98806 5.07702 5.18743 5.57022 5.58143 5.62971 5.65602 5.71739 5.89987 6.05948 6.10615 6.12876 6.19373 6.72087 7.33788 7.60685 8.90038 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.003625 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.713244 B = 7723.285332 C = 8056.334203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.591 4.591 8 H 0.058 0.942 9 C 0.240 3.760 10 H 0.023 0.977 11 O -0.568 6.568 12 C 0.048 3.952 13 N -0.534 5.534 14 C 0.019 3.981 15 C 0.073 3.927 16 O -0.387 6.387 17 C 0.140 3.860 18 H 0.073 0.927 19 C -0.096 4.096 20 C -0.110 4.110 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.117 4.117 25 C 0.036 3.964 26 H 0.262 0.738 27 H 0.353 0.647 28 H 0.072 0.928 29 H 0.023 0.977 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.134 0.866 39 H 0.088 0.912 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 -19.921 -1.302 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.629 4.629 8 H 0.076 0.924 9 C 0.182 3.818 10 H 0.041 0.959 11 O -0.372 6.372 12 C -0.079 4.079 13 N -0.258 5.258 14 C -0.109 4.109 15 C -0.004 4.004 16 O -0.307 6.307 17 C 0.083 3.917 18 H 0.091 0.909 19 C -0.097 4.097 20 C -0.129 4.129 21 C -0.147 4.147 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.092 4.092 26 H 0.071 0.929 27 H 0.197 0.803 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.152 0.848 39 H 0.107 0.893 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.011 -20.009 -1.090 20.921 hybrid contribution 1.158 1.628 0.370 2.032 sum 7.169 -18.381 -0.720 19.742 Atomic orbital electron populations 1.70217 1.07603 1.27383 1.48225 1.25878 0.95494 1.02844 0.93331 0.85554 0.78660 0.78823 0.78500 1.19703 1.20857 1.19055 1.22036 0.93496 0.92825 1.54530 0.92422 1.19143 0.87647 0.89757 0.85278 0.95945 1.86499 1.38548 1.96421 1.15684 1.22732 0.96029 0.89402 0.99777 1.62186 1.27873 1.01800 1.33969 1.22772 0.98166 0.99613 0.90391 1.22701 0.91007 0.83867 1.02777 1.87926 1.57314 1.44332 1.41092 1.20855 0.91897 0.91352 0.87640 0.90944 1.19623 0.98440 0.96831 0.94768 1.21092 0.96602 0.96684 0.98477 1.21441 0.98220 0.96335 0.98728 1.21546 0.99668 1.00374 0.92266 1.21440 0.96672 0.95752 1.00264 1.21198 0.99127 0.97066 0.96156 1.22741 0.94291 0.90553 1.01653 0.92949 0.80325 0.90992 0.95885 0.94849 0.90939 0.92327 0.86092 0.86604 0.84179 0.83409 0.83391 0.84817 0.89347 0.95111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.66 12.83 21.45 0.28 -53.39 16 2 C 0.03 1.52 5.40 84.65 0.46 1.98 16 3 Si 0.96 43.27 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.59 -32.53 8.76 25.60 0.22 -32.31 16 8 H 0.06 3.07 7.74 -2.91 -0.02 3.04 16 9 C 0.24 12.32 2.71 29.85 0.08 12.40 16 10 H 0.02 1.30 6.52 -2.39 -0.02 1.28 16 11 O -0.57 -29.97 12.58 -148.98 -1.87 -31.84 16 12 C 0.05 2.03 4.56 86.30 0.39 2.42 16 13 N -0.53 -19.73 4.59 -895.21 -4.11 -23.84 16 14 C 0.02 0.66 5.44 86.31 0.47 1.13 16 15 C 0.07 2.12 7.01 72.01 0.50 2.63 16 16 O -0.39 -11.57 9.62 -148.98 -1.43 -13.01 16 17 C 0.14 3.96 3.01 29.88 0.09 4.05 16 18 H 0.07 2.06 8.05 -2.39 -0.02 2.04 16 19 C -0.10 -2.38 5.01 -19.87 -0.10 -2.48 16 20 C -0.11 -2.62 9.35 22.27 0.21 -2.41 16 21 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 22 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 23 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 24 C -0.12 -2.44 9.68 22.27 0.22 -2.22 16 25 C 0.04 1.11 4.91 86.32 0.42 1.53 16 26 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.35 16.63 9.04 -74.06 -0.67 15.96 16 28 H 0.07 2.88 8.04 -2.39 -0.02 2.86 16 29 H 0.02 0.97 8.12 -2.39 -0.02 0.95 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 2.89 6.38 -2.39 -0.02 2.88 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.12 2.86 8.14 -2.39 -0.02 2.85 16 34 H 0.12 2.88 7.63 -2.91 -0.02 2.86 16 35 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.09 2.58 8.09 -2.39 -0.02 2.56 16 40 H 0.03 0.98 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -65.97 329.19 -1.12 -67.10 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.36 Total: 28.75 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 3.64 Total: -19.06 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -3.84 Total: -77.23 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -3.31 Total: -44.85 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -65.97 -1.12 -67.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.497 kcal (2) G-P(sol) polarization free energy of solvation -65.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds