Wall clock time and date at job start Mon Mar 30 2020 01:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 N 1.46497 * 109.47128 * 180.02562 * 9 7 2 11 11 C 1.39938 * 119.99723 * 179.97438 * 10 9 7 12 12 C 1.38863 * 120.02248 * 359.72916 * 11 10 9 13 13 C 1.38103 * 119.97985 * 179.74527 * 12 11 10 14 14 C 1.38703 * 120.02225 * 0.49950 * 13 12 11 15 15 O 1.36005 * 119.98456 * 179.74767 * 14 13 12 16 16 C 1.42899 * 116.99684 * 0.02562 * 15 14 13 17 17 C 1.53000 * 109.47149 * 179.97438 * 16 15 14 18 18 H 1.09011 * 110.26936 * 54.30032 * 17 16 15 19 19 C 1.54941 * 110.31333 * 176.39092 * 17 16 15 20 20 C 1.55412 * 100.89403 * 155.29244 * 19 17 16 21 21 C 1.54380 * 102.30749 * 325.99014 * 20 19 17 22 22 O 1.43237 * 107.58820 * 21.28840 * 21 20 19 23 23 C 1.38698 * 120.03517 * 359.77126 * 14 13 12 24 24 C 1.38116 * 120.02080 * 359.97438 * 23 14 13 25 25 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 26 26 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 27 27 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 28 28 H 0.97000 * 119.99741 * 359.97438 * 10 9 7 29 29 H 1.08002 * 120.00831 * 359.97438 * 12 11 10 30 30 H 1.08003 * 119.99444 * 180.22786 * 13 12 11 31 31 H 1.08996 * 109.47374 * 299.99829 * 16 15 14 32 32 H 1.09004 * 109.46908 * 60.00301 * 16 15 14 33 33 H 1.09008 * 111.12431 * 273.28731 * 19 17 16 34 34 H 1.08998 * 111.12423 * 37.44154 * 19 17 16 35 35 H 1.09004 * 110.87918 * 207.75298 * 20 19 17 36 36 H 1.08999 * 110.93612 * 84.25214 * 20 19 17 37 37 H 1.08995 * 109.83364 * 261.77117 * 21 20 19 38 38 H 1.09005 * 109.82704 * 140.79807 * 21 20 19 39 39 H 1.07998 * 119.99042 * 179.97438 * 23 14 13 40 40 H 1.08002 * 120.00625 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 7 2.2030 -3.6127 -0.0119 11 6 1.7364 -4.9320 -0.0125 12 6 0.3713 -5.1862 -0.0017 13 6 -0.0882 -6.4886 -0.0076 14 6 0.8134 -7.5426 -0.0139 15 8 0.3600 -8.8249 -0.0146 16 6 -1.0566 -9.0120 -0.0091 17 6 -1.3733 -10.5089 -0.0114 18 1 -0.8642 -11.0038 0.8158 19 6 -2.9030 -10.7352 0.0859 20 6 -3.0343 -12.1396 -0.5665 21 6 -1.9268 -12.1078 -1.6415 22 8 -0.9835 -11.0991 -1.2615 23 6 2.1771 -7.2896 -0.0191 24 6 2.6384 -5.9878 -0.0185 25 1 -0.4849 0.8401 0.0041 26 1 0.6280 -2.5591 0.8866 27 1 0.6206 -2.5548 -0.8933 28 1 3.1566 -3.4354 -0.0155 29 1 -0.3309 -4.3657 0.0077 30 1 -1.1499 -6.6865 -0.0029 31 1 -1.4805 -8.5520 0.8835 32 1 -1.4878 -8.5485 -0.8965 33 1 -3.2326 -10.7505 1.1249 34 1 -3.4483 -9.9845 -0.4861 35 1 -4.0156 -12.2652 -1.0241 36 1 -2.8445 -12.9271 0.1628 37 1 -2.3597 -11.8627 -2.6113 38 1 -1.4314 -13.0776 -1.6908 39 1 2.8785 -8.1108 -0.0236 40 1 3.7004 -5.7911 -0.0221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819409848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:51 Heat of formation + Delta-G solvation = -64.940174 kcal Electronic energy + Delta-G solvation = -20373.970167 eV Core-core repulsion = 17153.535808 eV Total energy + Delta-G solvation = -3220.434359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01445 -39.23436 -37.38934 -34.46605 -32.55795 -32.42879 -31.11450 -30.43062 -28.47484 -26.25415 -25.51874 -23.20509 -22.26097 -21.89915 -20.95406 -20.57123 -17.82069 -17.36469 -17.05276 -16.25294 -15.69185 -15.51588 -15.29962 -14.78760 -14.49970 -14.02704 -13.84543 -13.57831 -13.13863 -13.11224 -12.77112 -12.24567 -12.11098 -12.07759 -12.01804 -11.85247 -11.59875 -11.43772 -11.16977 -11.03570 -10.84982 -10.65798 -10.39232 -10.09273 -9.71563 -9.36557 -8.99282 -8.53228 -8.39405 -6.29873 -6.20938 -4.25575 1.86893 2.24524 3.21928 3.29402 3.33095 3.36185 3.55654 4.10836 4.26524 4.42244 4.48545 4.57435 4.64736 4.83507 4.90245 5.00349 5.16439 5.22550 5.24431 5.32244 5.36123 5.41013 5.45023 5.52402 5.61398 5.78168 5.86735 5.94460 6.16292 6.50856 6.60906 6.78970 6.92715 6.97876 7.08828 7.26858 7.44637 7.63285 7.87857 7.97161 8.34020 8.70865 8.94009 9.40879 10.89849 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040278 B = 0.002663 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.999092 B =10510.113704 C =11021.820849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.734 5.734 11 C 0.204 3.796 12 C -0.166 4.166 13 C -0.153 4.153 14 C 0.042 3.958 15 O -0.316 6.316 16 C 0.065 3.935 17 C 0.084 3.916 18 H 0.080 0.920 19 C -0.150 4.150 20 C -0.155 4.155 21 C 0.047 3.953 22 O -0.370 6.370 23 C -0.098 4.098 24 C -0.180 4.180 25 H 0.265 0.735 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.391 0.609 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.120 0.880 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 -21.805 0.225 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.359 5.359 11 C 0.096 3.904 12 C -0.190 4.190 13 C -0.172 4.172 14 C -0.004 4.004 15 O -0.231 6.231 16 C -0.011 4.011 17 C 0.027 3.973 18 H 0.098 0.902 19 C -0.187 4.187 20 C -0.193 4.193 21 C -0.029 4.029 22 O -0.289 6.289 23 C -0.118 4.118 24 C -0.203 4.203 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.224 0.776 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.530 -21.598 0.101 22.295 hybrid contribution 0.245 1.119 0.096 1.150 sum -5.285 -20.479 0.197 21.151 Atomic orbital electron populations 1.69958 1.06086 1.27189 1.49549 1.24943 0.94945 0.99480 0.94721 0.86356 0.79919 0.82900 0.77736 1.19638 1.20786 1.20791 1.21254 0.93418 0.90452 1.52400 0.91926 1.19068 0.88717 0.82762 0.96398 1.45449 1.09350 1.02178 1.78891 1.18009 0.92642 0.85835 0.93899 1.20548 0.94274 0.96315 1.07830 1.20900 0.98416 0.92513 1.05399 1.18568 0.93151 0.82431 1.06229 1.86023 1.22199 1.24403 1.90432 1.22781 0.81737 0.94861 1.01740 1.23001 0.93913 0.92517 0.87905 0.90182 1.23265 0.95302 0.97520 1.02651 1.23130 1.00063 0.97435 0.98627 1.23144 0.89762 0.92175 0.97869 1.88551 1.48664 1.53278 1.38412 1.19983 0.92239 0.96259 1.03270 1.20352 0.98604 0.90968 1.10393 0.92553 0.96366 0.96337 0.77625 0.85527 0.86497 0.91158 0.91743 0.89326 0.89815 0.89824 0.90380 0.91280 0.91411 0.86162 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.64 9.28 -34.44 -0.32 -14.96 16 8 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 9 C 0.25 6.46 4.67 -5.20 -0.02 6.43 16 10 N -0.73 -15.87 5.73 -59.76 -0.34 -16.21 16 11 C 0.20 4.05 6.66 -83.70 -0.56 3.49 16 12 C -0.17 -3.23 9.31 -39.40 -0.37 -3.60 16 13 C -0.15 -2.60 9.03 -39.46 -0.36 -2.95 16 14 C 0.04 0.71 6.69 -39.24 -0.26 0.44 16 15 O -0.32 -4.98 10.14 -20.49 -0.21 -5.18 16 16 C 0.06 0.78 4.45 37.16 0.17 0.95 16 17 C 0.08 0.87 3.72 -25.71 -0.10 0.77 16 18 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 19 C -0.15 -1.05 6.58 -24.43 -0.16 -1.21 16 20 C -0.15 -0.95 7.02 -24.73 -0.17 -1.12 16 21 C 0.05 0.39 7.80 37.88 0.30 0.69 16 22 O -0.37 -4.55 11.04 -35.96 -0.40 -4.95 16 23 C -0.10 -1.63 9.98 -39.46 -0.39 -2.02 16 24 C -0.18 -3.11 9.89 -39.40 -0.39 -3.50 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 26 H 0.02 0.50 7.94 -51.93 -0.41 0.09 16 27 H 0.02 0.51 7.96 -51.93 -0.41 0.10 16 28 H 0.39 7.83 8.34 -40.82 -0.34 7.49 16 29 H 0.13 2.58 6.73 -52.49 -0.35 2.23 16 30 H 0.12 1.69 6.29 -52.48 -0.33 1.35 16 31 H 0.07 0.74 7.66 -51.93 -0.40 0.34 16 32 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 33 H 0.09 0.49 8.14 -51.92 -0.42 0.06 16 34 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -30.80 333.08 -8.93 -39.73 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.98 Total: 5.57 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.74 Total: -14.98 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.39 Total: -41.14 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.60 Total: -10.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.80 -8.93 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819409848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.214 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds