Wall clock time and date at job start Mon Mar 30 2020 01:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 N 1.46497 * 109.47128 * 180.02562 * 9 7 2 11 11 C 1.39938 * 119.99723 * 179.97438 * 10 9 7 12 12 C 1.38863 * 120.02248 * 359.72916 * 11 10 9 13 13 C 1.38103 * 119.97985 * 179.74527 * 12 11 10 14 14 C 1.38703 * 120.02225 * 0.49950 * 13 12 11 15 15 O 1.36005 * 119.98456 * 179.74767 * 14 13 12 16 16 C 1.42899 * 116.99684 * 0.02562 * 15 14 13 17 17 C 1.53000 * 109.47149 * 179.97438 * 16 15 14 18 18 H 1.09011 * 110.26936 * 54.30032 * 17 16 15 19 19 C 1.54941 * 110.31333 * 176.39092 * 17 16 15 20 20 C 1.55412 * 100.89403 * 155.29244 * 19 17 16 21 21 C 1.54380 * 102.30749 * 325.99014 * 20 19 17 22 22 O 1.43237 * 107.58820 * 21.28840 * 21 20 19 23 23 C 1.38698 * 120.03517 * 359.77126 * 14 13 12 24 24 C 1.38116 * 120.02080 * 359.97438 * 23 14 13 25 25 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 26 26 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 27 27 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 28 28 H 0.97000 * 119.99741 * 359.97438 * 10 9 7 29 29 H 1.08002 * 120.00831 * 359.97438 * 12 11 10 30 30 H 1.08003 * 119.99444 * 180.22786 * 13 12 11 31 31 H 1.08996 * 109.47374 * 299.99829 * 16 15 14 32 32 H 1.09004 * 109.46908 * 60.00301 * 16 15 14 33 33 H 1.09008 * 111.12431 * 273.28731 * 19 17 16 34 34 H 1.08998 * 111.12423 * 37.44154 * 19 17 16 35 35 H 1.09004 * 110.87918 * 207.75298 * 20 19 17 36 36 H 1.08999 * 110.93612 * 84.25214 * 20 19 17 37 37 H 1.08995 * 109.83364 * 261.77117 * 21 20 19 38 38 H 1.09005 * 109.82704 * 140.79807 * 21 20 19 39 39 H 1.07998 * 119.99042 * 179.97438 * 23 14 13 40 40 H 1.08002 * 120.00625 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 7 2.2030 -3.6127 -0.0119 11 6 1.7364 -4.9320 -0.0125 12 6 0.3713 -5.1862 -0.0017 13 6 -0.0882 -6.4886 -0.0076 14 6 0.8134 -7.5426 -0.0139 15 8 0.3600 -8.8249 -0.0146 16 6 -1.0566 -9.0120 -0.0091 17 6 -1.3733 -10.5089 -0.0114 18 1 -0.8642 -11.0038 0.8158 19 6 -2.9030 -10.7352 0.0859 20 6 -3.0343 -12.1396 -0.5665 21 6 -1.9268 -12.1078 -1.6415 22 8 -0.9835 -11.0991 -1.2615 23 6 2.1771 -7.2896 -0.0191 24 6 2.6384 -5.9878 -0.0185 25 1 -0.4849 0.8401 0.0041 26 1 0.6280 -2.5591 0.8866 27 1 0.6206 -2.5548 -0.8933 28 1 3.1566 -3.4354 -0.0155 29 1 -0.3309 -4.3657 0.0077 30 1 -1.1499 -6.6865 -0.0029 31 1 -1.4805 -8.5520 0.8835 32 1 -1.4878 -8.5485 -0.8965 33 1 -3.2326 -10.7505 1.1249 34 1 -3.4483 -9.9845 -0.4861 35 1 -4.0156 -12.2652 -1.0241 36 1 -2.8445 -12.9271 0.1628 37 1 -2.3597 -11.8627 -2.6113 38 1 -1.4314 -13.0776 -1.6908 39 1 2.8785 -8.1108 -0.0236 40 1 3.7004 -5.7911 -0.0221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819409848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:51 Heat of formation + Delta-G solvation = -84.238173 kcal Electronic energy + Delta-G solvation = -20374.806991 eV Core-core repulsion = 17153.535808 eV Total energy + Delta-G solvation = -3221.271183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.10127 -40.24691 -38.74847 -36.18999 -34.41069 -33.18604 -32.09984 -31.72609 -30.12848 -27.80403 -26.61014 -24.97375 -23.45273 -22.60659 -22.07657 -21.95218 -19.22561 -18.87266 -18.01825 -17.44397 -17.17475 -16.78945 -16.41930 -16.24877 -15.62002 -15.49114 -15.06937 -14.94096 -14.47443 -14.24812 -14.10414 -13.94151 -13.56722 -13.42166 -13.08984 -12.81647 -12.69260 -12.67994 -12.36285 -12.22879 -12.19498 -11.91803 -11.75013 -11.57629 -11.39191 -10.82678 -10.48885 -10.24679 -9.87616 -8.31090 -7.87719 -6.44467 0.46114 0.79977 1.40848 1.41061 1.54540 2.30956 2.34651 2.82400 2.95242 2.98140 3.04833 3.52995 3.81640 3.95759 3.98167 4.03228 4.11027 4.19635 4.34782 4.41848 4.48613 4.50839 4.60947 4.73134 4.82313 4.89336 4.95674 4.99215 5.03403 5.09494 5.23464 5.28568 5.30907 5.47467 5.52654 5.55934 5.79822 5.91505 6.08484 6.47270 6.60998 6.78322 7.19450 7.30652 8.81092 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040278 B = 0.002663 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.999092 B =10510.113704 C =11021.820849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.274 3.726 10 N -0.739 5.739 11 C 0.175 3.825 12 C -0.185 4.185 13 C -0.153 4.153 14 C 0.049 3.951 15 O -0.326 6.326 16 C 0.055 3.945 17 C 0.080 3.920 18 H 0.081 0.919 19 C -0.144 4.144 20 C -0.147 4.147 21 C 0.037 3.963 22 O -0.406 6.406 23 C -0.101 4.101 24 C -0.167 4.167 25 H 0.269 0.731 26 H -0.010 1.010 27 H -0.012 1.012 28 H 0.397 0.603 29 H 0.104 0.896 30 H 0.139 0.861 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.126 -23.105 0.526 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.150 3.850 10 N -0.367 5.367 11 C 0.070 3.930 12 C -0.208 4.208 13 C -0.172 4.172 14 C 0.003 3.997 15 O -0.241 6.241 16 C -0.020 4.020 17 C 0.023 3.977 18 H 0.099 0.901 19 C -0.182 4.182 20 C -0.184 4.184 21 C -0.039 4.039 22 O -0.326 6.326 23 C -0.120 4.120 24 C -0.190 4.190 25 H 0.078 0.922 26 H 0.007 0.993 27 H 0.006 0.994 28 H 0.232 0.768 29 H 0.122 0.878 30 H 0.157 0.843 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.164 0.836 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.156 -22.962 0.402 23.537 hybrid contribution 0.063 1.306 -0.021 1.308 sum -5.093 -21.656 0.381 22.250 Atomic orbital electron populations 1.70088 1.07837 1.28398 1.50282 1.25941 0.95844 1.03455 0.94010 0.85198 0.78871 0.77840 0.77855 1.18474 1.20265 1.20191 1.21633 0.94013 0.91296 1.52441 0.91088 1.18520 0.88744 0.84089 0.93608 1.45084 1.08861 1.02030 1.80728 1.18260 0.93328 0.85616 0.95788 1.20545 0.94153 0.96865 1.09281 1.21051 0.99845 0.91478 1.04864 1.18766 0.93469 0.82975 1.04497 1.86035 1.24594 1.23395 1.90049 1.23111 0.79790 0.96669 1.02411 1.23115 0.96203 0.90965 0.87399 0.90093 1.23290 0.92712 0.98126 1.04059 1.23136 1.00083 0.97126 0.98104 1.23360 0.90125 0.91613 0.98826 1.88505 1.50416 1.54421 1.39256 1.20326 0.92749 0.96627 1.02314 1.20585 0.99427 0.90417 1.08542 0.92229 0.99270 0.99372 0.76809 0.87775 0.84290 0.89425 0.92028 0.87383 0.89646 0.88018 0.89246 0.90970 0.90710 0.83622 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.98 43.02 29.54 68.60 2.03 45.05 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.56 -30.91 9.28 25.60 0.24 -30.67 16 8 H 0.07 3.73 7.60 -2.91 -0.02 3.71 16 9 C 0.27 14.71 4.67 85.63 0.40 15.11 16 10 N -0.74 -32.87 5.73 -342.99 -1.97 -34.83 16 11 C 0.17 7.05 6.66 38.15 0.25 7.31 16 12 C -0.19 -7.45 9.31 22.39 0.21 -7.24 16 13 C -0.15 -5.17 9.03 22.35 0.20 -4.97 16 14 C 0.05 1.59 6.69 22.49 0.15 1.74 16 15 O -0.33 -9.79 10.14 -92.91 -0.94 -10.74 16 16 C 0.06 1.26 4.45 71.98 0.32 1.58 16 17 C 0.08 1.53 3.72 31.26 0.12 1.65 16 18 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 19 C -0.14 -1.68 6.58 32.09 0.21 -1.47 16 20 C -0.15 -1.41 7.02 31.89 0.22 -1.19 16 21 C 0.04 0.56 7.80 72.45 0.56 1.12 16 22 O -0.41 -9.60 11.04 -148.28 -1.64 -11.24 16 23 C -0.10 -3.16 9.98 22.35 0.22 -2.94 16 24 C -0.17 -5.57 9.89 22.39 0.22 -5.35 16 25 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 26 H -0.01 -0.61 7.94 -2.38 -0.02 -0.63 16 27 H -0.01 -0.67 7.96 -2.39 -0.02 -0.69 16 28 H 0.40 16.10 8.34 -92.71 -0.77 15.33 16 29 H 0.10 4.59 6.73 -2.91 -0.02 4.57 16 30 H 0.14 3.93 6.29 -2.91 -0.02 3.91 16 31 H 0.09 1.67 7.66 -2.39 -0.02 1.66 16 32 H 0.06 1.43 7.66 -2.38 -0.02 1.42 16 33 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.08 0.97 8.06 -2.39 -0.02 0.95 16 35 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -67.51 333.08 1.82 -65.69 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.26 Total: 25.08 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 3.79 Total: -24.46 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -1.68 Total: -89.37 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -2.58 Total: -21.97 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -67.51 1.82 -65.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819409848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.547 kcal (2) G-P(sol) polarization free energy of solvation -67.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds