Wall clock time and date at job start Mon Mar 30 2020 01:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00448 * 2 1 4 4 H 1.48499 * 109.47363 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46875 * 299.99728 * 3 2 1 6 6 H 1.48493 * 109.47207 * 59.99939 * 3 2 1 7 7 C 1.37881 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00614 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47633 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00403 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47608 * 180.02562 * 11 10 9 13 13 C 1.38263 * 119.94742 * 89.99004 * 12 11 10 14 14 C 1.38145 * 120.05672 * 180.02562 * 13 12 11 15 15 C 1.38727 * 119.94393 * 359.97438 * 14 13 12 16 16 O 1.35903 * 120.05683 * 180.02562 * 15 14 13 17 17 C 1.42900 * 116.99899 * 5.27841 * 16 15 14 18 18 H 1.09005 * 110.74852 * 38.70411 * 17 16 15 19 19 C 1.55309 * 111.01841 * 162.29746 * 17 16 15 20 20 C 1.54947 * 100.93859 * 152.40770 * 19 17 16 21 21 O 1.43650 * 105.13690 * 323.55374 * 20 19 17 22 22 C 1.43242 * 109.97008 * 24.43058 * 21 20 19 23 23 C 1.38739 * 119.88840 * 0.28252 * 15 14 13 24 24 C 1.38139 * 119.94285 * 359.46440 * 23 15 14 25 25 H 0.97003 * 119.99805 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46840 * 60.00017 * 9 7 2 27 27 H 1.09005 * 109.47010 * 300.00489 * 9 7 2 28 28 H 1.00896 * 111.00099 * 56.04094 * 10 9 7 29 29 H 1.09000 * 109.47189 * 59.99707 * 11 10 9 30 30 H 1.09007 * 109.46703 * 300.00155 * 11 10 9 31 31 H 1.08006 * 119.97235 * 359.97438 * 13 12 11 32 32 H 1.08000 * 120.02918 * 180.02562 * 14 13 12 33 33 H 1.08997 * 111.12254 * 270.32216 * 19 17 16 34 34 H 1.08997 * 111.12516 * 34.48755 * 19 17 16 35 35 H 1.08999 * 110.30863 * 204.63979 * 20 19 17 36 36 H 1.09006 * 110.31356 * 82.46899 * 20 19 17 37 37 H 1.08997 * 109.82703 * 238.77514 * 22 21 20 38 38 H 1.08997 * 109.82919 * 117.80011 * 22 21 20 39 39 H 1.07999 * 120.02358 * 179.71596 * 23 15 14 40 40 H 1.07998 * 119.97167 * 180.27839 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3963 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 7 2.2054 -3.6158 0.0027 11 6 1.5051 -4.9071 0.0032 12 6 2.5144 -6.0261 0.0049 13 6 2.9760 -6.5375 1.2037 14 6 3.9017 -7.5629 1.2078 15 6 4.3678 -8.0799 0.0078 16 8 5.2781 -9.0890 0.0092 17 6 5.6249 -9.6481 1.2778 18 1 4.7478 -9.7199 1.9209 19 6 6.3016 -11.0357 1.1087 20 6 7.1854 -11.0887 2.3803 21 8 7.6457 -9.7417 2.5736 22 6 6.7378 -8.8213 1.9568 23 6 3.9071 -7.5614 -1.1937 24 6 2.9775 -6.5396 -1.1925 25 1 -0.4850 0.8401 -0.0004 26 1 0.6239 -2.5575 -0.8880 27 1 0.6245 -2.5563 0.8920 28 1 2.8403 -3.5481 0.7839 29 1 0.8804 -4.9821 -0.8869 30 1 0.8798 -4.9809 0.8931 31 1 2.6132 -6.1344 2.1377 32 1 4.2617 -7.9623 2.1445 33 1 5.5619 -11.8363 1.1109 34 1 6.9106 -11.0684 0.2054 35 1 8.0310 -11.7589 2.2257 36 1 6.5959 -11.4138 3.2377 37 1 7.2644 -8.2267 1.2104 38 1 6.3035 -8.1674 2.7131 39 1 4.2719 -7.9592 -2.1292 40 1 2.6152 -6.1387 -2.1276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825720195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:16 Heat of formation + Delta-G solvation = -79.859546 kcal Electronic energy + Delta-G solvation = -20455.433427 eV Core-core repulsion = 17234.352116 eV Total energy + Delta-G solvation = -3221.081311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56866 -40.07927 -38.53898 -36.74548 -34.59065 -32.84035 -31.97815 -31.46200 -29.94252 -28.58140 -25.80790 -24.23303 -23.75549 -23.39055 -22.49693 -21.70866 -19.42683 -18.65671 -17.82106 -17.57766 -16.83933 -16.61492 -16.31581 -16.06243 -15.76697 -15.44990 -15.21450 -15.12413 -14.48337 -14.42703 -14.29763 -14.01300 -13.50913 -13.43245 -13.11732 -13.06181 -12.75626 -12.64209 -12.54206 -12.28999 -12.07111 -11.91914 -11.70077 -11.62202 -11.28713 -10.67713 -10.63285 -9.95353 -9.24735 -9.01217 -8.23301 -6.34473 0.38841 0.40440 1.41050 1.41843 1.55900 1.99110 2.39720 2.73545 2.88050 3.09938 3.26428 3.70766 3.71902 3.76216 3.86055 3.93657 4.01636 4.09168 4.22266 4.26433 4.43735 4.48916 4.62074 4.69055 4.73208 4.76542 4.82503 4.84350 5.00599 5.06024 5.10933 5.22928 5.28786 5.36918 5.60175 5.73748 5.78179 5.86846 6.00957 6.38477 6.43297 6.69531 6.87374 7.36475 8.88313 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030675 B = 0.002784 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.573114 B =10053.320735 C =10546.108422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.684 5.684 11 C 0.101 3.899 12 C -0.118 4.118 13 C -0.079 4.079 14 C -0.204 4.204 15 C 0.115 3.885 16 O -0.308 6.308 17 C 0.046 3.954 18 H 0.104 0.896 19 C -0.144 4.144 20 C 0.047 3.953 21 O -0.401 6.401 22 C 0.027 3.973 23 C -0.155 4.155 24 C -0.067 4.067 25 H 0.266 0.734 26 H 0.002 0.998 27 H -0.037 1.037 28 H 0.334 0.666 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.132 0.868 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.143 0.857 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.317 -24.517 3.845 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.314 5.314 11 C -0.028 4.028 12 C -0.118 4.118 13 C -0.098 4.098 14 C -0.222 4.222 15 C 0.070 3.930 16 O -0.222 6.222 17 C -0.010 4.010 18 H 0.122 0.878 19 C -0.181 4.181 20 C -0.029 4.029 21 O -0.321 6.321 22 C -0.050 4.050 23 C -0.173 4.173 24 C -0.085 4.085 25 H 0.074 0.926 26 H 0.020 0.980 27 H -0.019 1.019 28 H 0.151 0.849 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.150 0.850 32 H 0.164 0.836 33 H 0.133 0.867 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.161 0.839 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.527 -24.433 3.108 27.194 hybrid contribution -0.647 1.134 0.875 1.572 sum 10.880 -23.299 3.983 26.021 Atomic orbital electron populations 1.70092 1.07761 1.27981 1.51551 1.25953 0.95814 1.03379 0.94578 0.85273 0.78880 0.78263 0.77810 1.18773 1.20329 1.20192 1.21559 0.93755 0.91435 1.50555 0.91916 1.19237 0.90630 0.88756 0.93413 1.60595 1.20378 1.01068 1.49375 1.20798 0.93906 0.87651 1.00402 1.19781 1.00242 0.97825 0.93997 1.21010 0.95730 0.95257 0.97798 1.21353 1.02426 1.00931 0.97519 1.19074 0.90294 0.89191 0.94462 1.86109 1.56593 1.47747 1.31772 1.24177 0.98329 0.94157 0.84375 0.87800 1.23345 1.00120 0.94614 1.00026 1.23616 0.99134 0.83654 0.96484 1.88434 1.48905 1.17091 1.77622 1.23710 0.90924 0.92800 0.97520 1.20563 1.00331 0.99474 0.96948 1.20980 0.95077 0.94293 0.98163 0.92564 0.97954 1.01908 0.84899 0.91353 0.95326 0.85049 0.83576 0.86703 0.89306 0.87442 0.90004 0.91277 0.90002 0.83919 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.05 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.66 29.54 68.60 2.03 46.68 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.53 -30.93 9.32 25.60 0.24 -30.70 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.25 5.44 85.56 0.47 11.72 16 10 N -0.68 -30.11 6.48 -522.00 -3.38 -33.49 16 11 C 0.10 3.66 5.81 85.56 0.50 4.15 16 12 C -0.12 -3.55 5.39 -19.85 -0.11 -3.66 16 13 C -0.08 -2.07 9.69 22.25 0.22 -1.86 16 14 C -0.20 -4.58 8.77 22.36 0.20 -4.39 16 15 C 0.11 2.71 6.63 22.51 0.15 2.86 16 16 O -0.31 -6.51 9.89 -92.45 -0.91 -7.42 16 17 C 0.05 0.72 2.80 31.86 0.09 0.80 16 18 H 0.10 1.33 6.62 -2.38 -0.02 1.32 16 19 C -0.14 -1.56 6.89 32.05 0.22 -1.34 16 20 C 0.05 0.51 7.78 72.65 0.56 1.07 16 21 O -0.40 -7.51 11.36 -148.98 -1.69 -9.20 16 22 C 0.03 0.49 7.06 72.45 0.51 1.00 16 23 C -0.15 -3.84 9.99 22.37 0.22 -3.61 16 24 C -0.07 -1.86 9.69 22.25 0.22 -1.64 16 25 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 26 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 27 H -0.04 -2.12 8.14 -2.38 -0.02 -2.14 16 28 H 0.33 14.12 8.71 -89.70 -0.78 13.34 16 29 H 0.07 2.49 8.08 -2.39 -0.02 2.47 16 30 H 0.03 1.02 8.08 -2.38 -0.02 1.00 16 31 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 32 H 0.15 2.52 5.32 -2.91 -0.02 2.50 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.07 1.41 8.05 -2.39 -0.02 1.39 16 38 H 0.08 1.34 7.43 -2.39 -0.02 1.32 16 39 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 40 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -67.65 334.05 0.52 -67.13 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.25 Total: 17.77 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 3.94 Total: -25.07 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -3.10 Total: -89.90 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -2.61 Total: -16.62 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.65 0.52 -67.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825720195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.729 kcal (2) G-P(sol) polarization free energy of solvation -67.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds