Wall clock time and date at job start Mon Mar 30 2020 01:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99849 * 2 1 4 4 H 1.48500 * 109.46954 * 239.99571 * 3 2 1 5 5 H 1.48501 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47030 * 120.00249 * 3 2 1 7 7 C 1.37878 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99593 * 359.72706 * 7 2 1 10 10 O 1.42897 * 110.29360 * 60.95238 * 9 7 2 11 11 C 1.54259 * 110.32717 * 298.81689 * 9 7 2 12 12 C 1.54382 * 105.06407 * 241.11114 * 11 9 7 13 13 N 1.48565 * 104.59209 * 23.85063 * 12 11 9 14 14 C 1.46899 * 110.99331 * 200.95980 * 13 12 11 15 15 C 1.52994 * 109.47530 * 294.27470 * 14 13 12 16 16 H 1.08994 * 109.47206 * 57.90362 * 15 14 13 17 17 O 1.42904 * 109.47190 * 297.90704 * 15 14 13 18 18 C 1.50697 * 109.47484 * 177.91012 * 15 14 13 19 19 C 1.38234 * 120.00559 * 84.72525 * 18 15 14 20 20 C 1.38231 * 120.00687 * 179.79516 * 19 18 15 21 21 C 1.38236 * 119.99603 * 0.43270 * 20 19 18 22 22 C 1.38238 * 119.99931 * 359.81987 * 21 20 19 23 23 C 1.38231 * 120.00204 * 359.97438 * 22 21 20 24 24 C 1.48556 * 104.22202 * 320.51911 * 13 12 11 25 25 H 0.97002 * 119.99680 * 359.97438 * 1 2 3 26 26 H 0.96705 * 113.99437 * 300.69685 * 10 9 7 27 27 H 1.09000 * 110.32047 * 0.02562 * 11 9 7 28 28 H 1.08995 * 110.32529 * 122.10865 * 11 9 7 29 29 H 1.09003 * 110.40804 * 142.63097 * 12 11 9 30 30 H 1.08996 * 110.40822 * 265.06974 * 12 11 9 31 31 H 1.08998 * 109.47400 * 54.27655 * 14 13 12 32 32 H 1.09006 * 109.46881 * 174.27552 * 14 13 12 33 33 H 0.96703 * 114.00078 * 299.99744 * 17 15 14 34 34 H 1.08008 * 119.99724 * 359.97438 * 19 18 15 35 35 H 1.07997 * 120.00468 * 180.27775 * 20 19 18 36 36 H 1.08002 * 120.00248 * 179.83430 * 21 20 19 37 37 H 1.08004 * 119.99800 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00416 * 179.97438 * 23 22 21 39 39 H 1.09005 * 110.41050 * 280.70456 * 24 13 12 40 40 H 1.08999 * 110.40861 * 158.26576 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0073 10 8 0.4348 -2.6062 -1.1607 11 6 0.3844 -2.6109 1.2786 12 6 0.9178 -3.8558 2.0196 13 7 2.3135 -4.0107 1.5346 14 6 2.7931 -5.3837 1.7410 15 6 2.8875 -5.6710 3.2407 16 1 1.9111 -5.5217 3.7015 17 8 3.8362 -4.7840 3.8369 18 6 3.3303 -7.0958 3.4524 19 6 4.6761 -7.4111 3.4365 20 6 5.0825 -8.7174 3.6349 21 6 4.1426 -9.7099 3.8404 22 6 2.7964 -9.3956 3.8511 23 6 2.3903 -8.0886 3.6569 24 6 2.2350 -3.6860 0.0871 25 1 -0.4850 0.8401 0.0004 26 1 -0.2183 -1.8986 -1.2503 27 1 0.5038 -1.7216 1.8975 28 1 -0.6635 -2.7473 1.0117 29 1 0.9057 -3.6911 3.0970 30 1 0.3260 -4.7341 1.7617 31 1 2.0974 -6.0848 1.2799 32 1 3.7775 -5.4969 1.2867 33 1 4.7294 -4.8621 3.4746 34 1 5.4104 -6.6363 3.2720 35 1 6.1342 -8.9629 3.6270 36 1 4.4599 -10.7310 3.9927 37 1 2.0621 -10.1712 4.0112 38 1 1.3387 -7.8431 3.6649 39 1 1.8494 -4.5378 -0.4732 40 1 3.2148 -3.3935 -0.2905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:32 Heat of formation + Delta-G solvation = -67.837466 kcal Electronic energy + Delta-G solvation = -21649.132790 eV Core-core repulsion = 18428.572795 eV Total energy + Delta-G solvation = -3220.559995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.81863 -38.35004 -36.67915 -34.57692 -32.05725 -31.87899 -30.99574 -30.02472 -28.05630 -26.77822 -24.45196 -23.13976 -22.65719 -21.19543 -20.10851 -19.33406 -17.66349 -16.98769 -16.08657 -15.78384 -15.31136 -15.04209 -14.78793 -14.48576 -14.11905 -13.75391 -13.73800 -13.50672 -12.98362 -12.84873 -12.22024 -12.11645 -11.85824 -11.69931 -11.41416 -11.25340 -11.10947 -10.96675 -10.70675 -10.52212 -10.42152 -10.29623 -10.02292 -9.76969 -9.08183 -9.02153 -8.81825 -8.51327 -8.08998 -7.78123 -6.11730 -4.17179 1.17382 1.24020 3.32000 3.35584 3.39790 3.59826 4.30575 4.40063 4.57622 4.71465 4.80857 4.88409 5.00211 5.09688 5.20073 5.26599 5.39234 5.42831 5.71940 5.79295 5.80607 5.84927 5.93245 6.02431 6.17435 6.22474 6.29406 6.33841 6.38700 6.49208 6.54831 6.82695 6.90167 7.09960 7.25463 7.57568 7.70332 7.71059 7.83183 7.90430 8.26052 8.84848 9.46738 9.55597 10.95706 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033619 B = 0.003886 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.651969 B = 7204.125609 C = 7547.944601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.065 3.935 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.249 3.751 10 O -0.596 6.596 11 C -0.119 4.119 12 C 0.030 3.970 13 N -0.488 5.488 14 C 0.019 3.981 15 C 0.153 3.847 16 H 0.105 0.895 17 O -0.538 6.538 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.111 4.111 24 C 0.052 3.948 25 H 0.266 0.734 26 H 0.382 0.618 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.369 0.631 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.029 0.971 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 -15.936 7.004 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.210 3.790 10 O -0.405 6.405 11 C -0.158 4.158 12 C -0.098 4.098 13 N -0.213 5.213 14 C -0.110 4.110 15 C 0.093 3.907 16 H 0.123 0.877 17 O -0.343 6.343 18 C -0.110 4.110 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.137 4.137 23 C -0.129 4.129 24 C -0.075 4.075 25 H 0.075 0.925 26 H 0.233 0.767 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.217 0.783 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.047 0.953 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.719 -15.807 7.533 18.420 hybrid contribution -0.021 0.535 -0.608 0.810 sum 5.698 -15.272 6.925 17.710 Atomic orbital electron populations 1.69692 1.05892 1.27351 1.51258 1.25006 0.94992 0.99394 0.94183 0.86530 0.79551 0.82442 0.78735 1.20239 1.21337 1.20078 1.21606 0.93524 0.90384 1.50120 0.92043 1.19240 0.86407 0.91497 0.81893 1.86076 1.53260 1.54327 1.46822 1.22831 0.98176 0.95630 0.99176 1.23189 0.88433 0.98349 0.99801 1.65332 1.21333 1.20053 1.14533 1.22932 1.01151 0.91460 0.95472 1.20797 0.93441 0.83535 0.92931 0.87682 1.86664 1.21729 1.61789 1.64096 1.20724 0.94068 0.96806 0.99382 1.20924 0.95303 0.96665 1.00047 1.21117 0.99537 0.92989 0.99986 1.21152 0.93301 0.99242 1.00667 1.21140 0.96050 0.96360 1.00166 1.21034 0.99437 0.92773 0.99699 1.23006 1.00360 0.97367 0.86799 0.92453 0.76706 0.90571 0.93132 0.91400 0.95580 0.94395 0.90800 0.78340 0.86002 0.86044 0.86220 0.86057 0.85929 0.95287 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 10.80 55.43 0.60 -23.91 16 2 C 0.07 1.77 5.01 -17.82 -0.09 1.68 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.22 8.10 -34.44 -0.28 -14.50 16 8 H 0.06 1.70 7.53 -52.49 -0.40 1.30 16 9 C 0.25 6.32 1.06 -90.39 -0.10 6.23 16 10 O -0.60 -15.76 12.95 -35.23 -0.46 -16.21 16 11 C -0.12 -2.84 5.55 -25.35 -0.14 -2.98 16 12 C 0.03 0.60 5.57 -2.18 -0.01 0.59 16 13 N -0.49 -9.62 5.31 -229.97 -1.22 -10.84 16 14 C 0.02 0.30 4.46 -3.83 -0.02 0.28 16 15 C 0.15 2.12 3.16 -27.89 -0.09 2.03 16 16 H 0.11 1.52 6.91 -51.93 -0.36 1.16 16 17 O -0.54 -8.02 13.04 -35.23 -0.46 -8.47 16 18 C -0.11 -1.31 5.00 -104.62 -0.52 -1.84 16 19 C -0.11 -1.20 9.33 -39.59 -0.37 -1.57 16 20 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 21 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 23 C -0.11 -1.24 9.68 -39.58 -0.38 -1.63 16 24 C 0.05 1.16 5.77 -2.18 -0.01 1.14 16 25 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.38 10.21 7.31 45.56 0.33 10.55 16 27 H 0.08 1.99 7.22 -51.93 -0.38 1.61 16 28 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 29 H 0.07 1.28 7.66 -51.93 -0.40 0.89 16 30 H 0.03 0.48 7.89 -51.93 -0.41 0.07 16 31 H 0.04 0.59 7.96 -51.93 -0.41 0.17 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.37 4.27 7.40 45.56 0.34 4.60 16 34 H 0.12 1.10 6.62 -52.48 -0.35 0.76 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.03 0.63 7.93 -51.93 -0.41 0.21 16 40 H 0.08 1.69 7.67 -51.93 -0.40 1.29 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -29.85 324.56 -9.37 -39.22 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -4.50 Total: 14.33 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -3.20 Total: -15.21 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.62 Total: -34.76 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.92 Total: -24.69 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.85 -9.37 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.614 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds