Wall clock time and date at job start Mon Mar 30 2020 01:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99849 * 2 1 4 4 H 1.48500 * 109.46954 * 239.99571 * 3 2 1 5 5 H 1.48501 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47030 * 120.00249 * 3 2 1 7 7 C 1.37878 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99593 * 359.72706 * 7 2 1 10 10 O 1.42897 * 110.29360 * 60.95238 * 9 7 2 11 11 C 1.54259 * 110.32717 * 298.81689 * 9 7 2 12 12 C 1.54382 * 105.06407 * 241.11114 * 11 9 7 13 13 N 1.48565 * 104.59209 * 23.85063 * 12 11 9 14 14 C 1.46899 * 110.99331 * 200.95980 * 13 12 11 15 15 C 1.52994 * 109.47530 * 294.27470 * 14 13 12 16 16 H 1.08994 * 109.47206 * 57.90362 * 15 14 13 17 17 O 1.42904 * 109.47190 * 297.90704 * 15 14 13 18 18 C 1.50697 * 109.47484 * 177.91012 * 15 14 13 19 19 C 1.38234 * 120.00559 * 84.72525 * 18 15 14 20 20 C 1.38231 * 120.00687 * 179.79516 * 19 18 15 21 21 C 1.38236 * 119.99603 * 0.43270 * 20 19 18 22 22 C 1.38238 * 119.99931 * 359.81987 * 21 20 19 23 23 C 1.38231 * 120.00204 * 359.97438 * 22 21 20 24 24 C 1.48556 * 104.22202 * 320.51911 * 13 12 11 25 25 H 0.97002 * 119.99680 * 359.97438 * 1 2 3 26 26 H 0.96705 * 113.99437 * 300.69685 * 10 9 7 27 27 H 1.09000 * 110.32047 * 0.02562 * 11 9 7 28 28 H 1.08995 * 110.32529 * 122.10865 * 11 9 7 29 29 H 1.09003 * 110.40804 * 142.63097 * 12 11 9 30 30 H 1.08996 * 110.40822 * 265.06974 * 12 11 9 31 31 H 1.08998 * 109.47400 * 54.27655 * 14 13 12 32 32 H 1.09006 * 109.46881 * 174.27552 * 14 13 12 33 33 H 0.96703 * 114.00078 * 299.99744 * 17 15 14 34 34 H 1.08008 * 119.99724 * 359.97438 * 19 18 15 35 35 H 1.07997 * 120.00468 * 180.27775 * 20 19 18 36 36 H 1.08002 * 120.00248 * 179.83430 * 21 20 19 37 37 H 1.08004 * 119.99800 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00416 * 179.97438 * 23 22 21 39 39 H 1.09005 * 110.41050 * 280.70456 * 24 13 12 40 40 H 1.08999 * 110.40861 * 158.26576 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0073 10 8 0.4348 -2.6062 -1.1607 11 6 0.3844 -2.6109 1.2786 12 6 0.9178 -3.8558 2.0196 13 7 2.3135 -4.0107 1.5346 14 6 2.7931 -5.3837 1.7410 15 6 2.8875 -5.6710 3.2407 16 1 1.9111 -5.5217 3.7015 17 8 3.8362 -4.7840 3.8369 18 6 3.3303 -7.0958 3.4524 19 6 4.6761 -7.4111 3.4365 20 6 5.0825 -8.7174 3.6349 21 6 4.1426 -9.7099 3.8404 22 6 2.7964 -9.3956 3.8511 23 6 2.3903 -8.0886 3.6569 24 6 2.2350 -3.6860 0.0871 25 1 -0.4850 0.8401 0.0004 26 1 -0.2183 -1.8986 -1.2503 27 1 0.5038 -1.7216 1.8975 28 1 -0.6635 -2.7473 1.0117 29 1 0.9057 -3.6911 3.0970 30 1 0.3260 -4.7341 1.7617 31 1 2.0974 -6.0848 1.2799 32 1 3.7775 -5.4969 1.2867 33 1 4.7294 -4.8621 3.4746 34 1 5.4104 -6.6363 3.2720 35 1 6.1342 -8.9629 3.6270 36 1 4.4599 -10.7310 3.9927 37 1 2.0621 -10.1712 4.0112 38 1 1.3387 -7.8431 3.6649 39 1 1.8494 -4.5378 -0.4732 40 1 3.2148 -3.3935 -0.2905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829974714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:31 Heat of formation + Delta-G solvation = -90.296253 kcal Electronic energy + Delta-G solvation = -21650.106676 eV Core-core repulsion = 18428.572795 eV Total energy + Delta-G solvation = -3221.533881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81577 -39.85282 -37.90025 -36.32000 -34.14963 -32.93644 -31.74576 -31.48048 -29.82114 -28.25422 -26.23325 -24.41004 -23.43681 -22.29238 -21.60844 -21.17207 -19.04391 -18.58514 -17.17886 -16.97513 -16.73919 -16.60342 -16.29987 -15.72484 -15.64559 -15.17889 -14.94879 -14.42044 -14.21030 -14.04529 -14.03971 -13.57892 -13.41208 -13.16788 -12.97181 -12.73002 -12.53019 -12.37681 -12.30236 -12.08260 -12.02697 -11.89720 -11.79201 -11.06555 -10.86709 -10.58385 -10.12978 -9.82689 -9.65939 -9.33268 -8.18065 -6.30894 0.39213 0.49580 1.43041 1.43906 1.51637 2.42018 2.76627 2.97113 3.13719 3.56183 3.74234 3.90690 3.95751 4.00025 4.13541 4.21485 4.28265 4.32494 4.33276 4.45022 4.54617 4.60906 4.63164 4.71654 4.80630 4.91800 5.04158 5.05776 5.15795 5.24360 5.36651 5.55570 5.61529 5.65103 5.66950 5.77909 5.95299 6.10017 6.15278 6.24444 6.73397 6.84243 7.36667 7.44529 8.87607 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033619 B = 0.003886 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.651969 B = 7204.125609 C = 7547.944601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.232 3.768 10 O -0.603 6.603 11 C -0.112 4.112 12 C 0.041 3.959 13 N -0.497 5.497 14 C 0.023 3.977 15 C 0.163 3.837 16 H 0.096 0.904 17 O -0.557 6.557 18 C -0.125 4.125 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.126 4.126 24 C 0.061 3.939 25 H 0.268 0.732 26 H 0.377 0.623 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.382 0.618 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.767 -17.432 7.692 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.070 0.930 9 C 0.192 3.808 10 O -0.411 6.411 11 C -0.151 4.151 12 C -0.087 4.087 13 N -0.222 5.222 14 C -0.106 4.106 15 C 0.103 3.897 16 H 0.114 0.886 17 O -0.364 6.364 18 C -0.126 4.126 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.067 4.067 25 H 0.077 0.923 26 H 0.227 0.773 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.231 0.769 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.145 0.855 39 H 0.051 0.949 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.842 -17.320 8.223 20.357 hybrid contribution -0.349 0.942 -0.812 1.292 sum 6.493 -16.378 7.410 19.113 Atomic orbital electron populations 1.69774 1.06739 1.28032 1.51057 1.25679 0.95846 1.02197 0.93737 0.85613 0.78453 0.78939 0.78598 1.19900 1.20616 1.20028 1.21834 0.93299 0.91910 1.51079 0.93025 1.19512 0.87038 0.92286 0.81940 1.86069 1.53277 1.54035 1.47719 1.22618 0.97658 0.96293 0.98541 1.23069 0.88771 0.97051 0.99831 1.65288 1.21060 1.23181 1.12642 1.23008 1.01474 0.88981 0.97136 1.20612 0.93071 0.84763 0.91236 0.88631 1.86621 1.22801 1.62409 1.64572 1.20564 0.94975 0.95665 1.01411 1.21156 0.95037 0.97767 1.00027 1.21450 1.00946 0.92523 0.99239 1.21540 0.93055 1.00510 0.99328 1.21441 0.97021 0.96262 0.99603 1.21225 0.99686 0.93417 1.00126 1.22827 0.99070 0.96217 0.88591 0.92318 0.77340 0.93563 0.93976 0.90363 0.93800 0.93915 0.89727 0.76863 0.84874 0.83795 0.83699 0.84012 0.85529 0.94884 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.39 10.80 21.45 0.23 -50.16 16 2 C 0.03 1.36 5.01 84.65 0.42 1.78 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.27 8.10 25.60 0.21 -30.06 16 8 H 0.05 2.90 7.53 -2.91 -0.02 2.88 16 9 C 0.23 11.91 1.06 -10.64 -0.01 11.90 16 10 O -0.60 -32.38 12.95 -148.98 -1.93 -34.31 16 11 C -0.11 -5.42 5.55 31.49 0.17 -5.24 16 12 C 0.04 1.59 5.57 86.45 0.48 2.07 16 13 N -0.50 -19.26 5.31 -881.48 -4.68 -23.93 16 14 C 0.02 0.67 4.46 86.30 0.38 1.06 16 15 C 0.16 4.34 3.16 29.85 0.09 4.44 16 16 H 0.10 2.69 6.91 -2.39 -0.02 2.67 16 17 O -0.56 -16.02 13.04 -148.98 -1.94 -17.96 16 18 C -0.13 -2.83 5.00 -19.87 -0.10 -2.93 16 19 C -0.12 -2.38 9.33 22.27 0.21 -2.17 16 20 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 21 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 22 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 23 C -0.13 -2.62 9.68 22.27 0.22 -2.40 16 24 C 0.06 2.68 5.77 86.45 0.50 3.18 16 25 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 26 H 0.38 20.64 7.31 -74.05 -0.54 20.10 16 27 H 0.05 2.46 7.22 -2.39 -0.02 2.45 16 28 H 0.04 2.04 7.98 -2.39 -0.02 2.02 16 29 H 0.08 2.91 7.66 -2.39 -0.02 2.89 16 30 H 0.04 1.57 7.89 -2.39 -0.02 1.55 16 31 H 0.04 1.25 7.96 -2.39 -0.02 1.23 16 32 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.38 8.36 7.40 -74.06 -0.55 7.81 16 34 H 0.13 2.15 6.62 -2.91 -0.02 2.13 16 35 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.03 1.41 7.93 -2.38 -0.02 1.39 16 40 H 0.07 3.15 7.67 -2.39 -0.02 3.13 16 Total: -1.00 -63.40 324.56 -3.08 -66.48 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -0.04 Total: 38.00 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 3.25 Total: -23.84 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -4.45 Total: -74.09 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -3.87 Total: -52.27 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -63.40 -3.08 -66.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.815 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds