Wall clock time and date at job start Mon Mar 30 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48498 * 109.47536 * 269.99992 * 3 2 1 5 5 H 1.48505 * 109.47118 * 30.00411 * 3 2 1 6 6 H 1.48500 * 109.46981 * 149.99886 * 3 2 1 7 7 C 1.37874 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00428 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.27156 * 302.09303 * 9 7 2 11 11 C 1.54594 * 110.30989 * 64.28222 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.87684 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.53003 * 109.47175 * 52.66416 * 14 13 12 16 16 H 1.08995 * 109.46911 * 59.99977 * 15 14 13 17 17 O 1.42901 * 109.46874 * 299.99936 * 15 14 13 18 18 C 1.50703 * 109.47070 * 179.97438 * 15 14 13 19 19 C 1.38234 * 119.99664 * 84.72660 * 18 15 14 20 20 C 1.38238 * 119.99674 * 179.80920 * 19 18 15 21 21 C 1.38242 * 119.99992 * 0.39839 * 20 19 18 22 22 C 1.38237 * 119.99488 * 359.85591 * 21 20 19 23 23 C 1.38230 * 120.00447 * 359.95939 * 22 21 20 24 24 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 25 25 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 26 26 H 0.96695 * 114.00330 * 57.90701 * 10 9 7 27 27 H 1.08999 * 110.72754 * 259.23584 * 11 9 7 28 28 H 1.08998 * 110.72457 * 22.34151 * 11 9 7 29 29 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 30 30 H 1.09009 * 110.66924 * 203.98451 * 12 11 9 31 31 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 32 32 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 33 33 H 0.96699 * 114.00290 * 299.99906 * 17 15 14 34 34 H 1.07995 * 120.00377 * 359.97438 * 19 18 15 35 35 H 1.08001 * 120.00364 * 180.23411 * 20 19 18 36 36 H 1.07995 * 119.99632 * 179.83623 * 21 20 19 37 37 H 1.08001 * 119.99258 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00210 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.91668 * 215.45268 * 24 13 12 40 40 H 1.09002 * 109.91761 * 94.35443 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.3862 -2.5726 1.1336 11 6 0.4384 -2.6484 -1.3083 12 6 0.6034 -4.1508 -1.6491 13 7 2.0080 -4.4410 -1.2524 14 6 2.2135 -5.8801 -1.0412 15 6 1.7334 -6.6501 -2.2731 16 1 2.2991 -6.3266 -3.1468 17 8 0.3435 -6.3932 -2.4836 18 6 1.9448 -8.1264 -2.0567 19 6 0.9951 -8.8687 -1.3800 20 6 1.1871 -10.2237 -1.1849 21 6 2.3328 -10.8348 -1.6593 22 6 3.2849 -10.0913 -2.3314 23 6 3.0911 -8.7371 -2.5298 24 6 2.2345 -3.6841 -0.0020 25 1 -0.4851 0.8401 -0.0004 26 1 -0.2555 -1.8513 1.1866 27 1 -0.6104 -2.4039 -1.1404 28 1 0.8573 -2.0231 -2.0967 29 1 -0.0910 -4.7560 -1.0663 30 1 0.4586 -4.3215 -2.7160 31 1 3.2736 -6.0760 -0.8805 32 1 1.6477 -6.2035 -0.1673 33 1 -0.2215 -6.6566 -1.7444 34 1 0.1018 -8.3906 -1.0061 35 1 0.4434 -10.8044 -0.6595 36 1 2.4840 -11.8928 -1.5046 37 1 4.1802 -10.5687 -2.7017 38 1 3.8348 -8.1564 -3.0553 39 1 3.2599 -3.3156 0.0284 40 1 2.0446 -4.3245 0.8594 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:35 Heat of formation + Delta-G solvation = -64.914689 kcal Electronic energy + Delta-G solvation = -21757.578026 eV Core-core repulsion = 18537.144772 eV Total energy + Delta-G solvation = -3220.433254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91275 -38.41206 -36.68740 -34.35409 -32.03340 -32.02382 -31.00416 -30.01523 -27.94144 -26.90902 -24.45518 -22.96578 -22.66070 -21.10974 -20.25360 -19.30450 -17.69980 -17.06326 -16.07823 -15.95685 -15.18471 -14.86453 -14.82003 -14.53073 -14.20078 -13.87737 -13.58058 -13.38095 -13.03286 -12.84013 -12.22467 -12.02500 -11.95345 -11.52028 -11.48442 -11.24208 -11.15911 -10.88655 -10.83518 -10.52749 -10.41485 -10.33461 -9.88820 -9.52161 -9.11780 -9.08004 -8.83448 -8.53325 -8.01375 -7.72996 -6.15156 -4.21011 1.17377 1.24157 3.27000 3.33658 3.37717 3.60002 4.32724 4.38285 4.49848 4.71339 4.81146 4.88639 4.99202 5.11676 5.16893 5.28020 5.40189 5.44155 5.74366 5.82534 5.83571 5.88767 6.02675 6.19238 6.25016 6.29793 6.34037 6.38176 6.45117 6.50134 6.73094 6.82762 6.99725 7.20274 7.36895 7.60484 7.62657 7.73912 7.77481 7.90375 8.21807 8.80284 9.45811 9.57670 10.92461 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041973 B = 0.003699 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.934827 B = 7566.950409 C = 7737.531483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.243 3.757 10 O -0.596 6.596 11 C -0.124 4.124 12 C 0.046 3.954 13 N -0.512 5.512 14 C 0.023 3.977 15 C 0.149 3.851 16 H 0.114 0.886 17 O -0.546 6.546 18 C -0.107 4.107 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.110 4.110 24 C 0.054 3.946 25 H 0.266 0.734 26 H 0.383 0.617 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.369 0.631 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 -17.668 -3.736 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.079 0.921 9 C 0.203 3.797 10 O -0.406 6.406 11 C -0.163 4.163 12 C -0.081 4.081 13 N -0.237 5.237 14 C -0.107 4.107 15 C 0.090 3.910 16 H 0.132 0.868 17 O -0.352 6.352 18 C -0.108 4.108 19 C -0.130 4.130 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.128 4.128 24 C -0.074 4.074 25 H 0.076 0.924 26 H 0.235 0.765 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.217 0.783 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.095 0.905 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.094 -17.695 -4.577 18.537 hybrid contribution -0.554 0.845 1.100 1.494 sum 2.540 -16.850 -3.477 17.391 Atomic orbital electron populations 1.69625 1.05930 1.27320 1.51166 1.25011 0.94999 0.99427 0.93968 0.86462 0.79823 0.82754 0.78157 1.20542 1.21189 1.19845 1.21717 0.93512 0.90717 1.50661 0.92062 1.19351 0.86264 0.91401 0.82700 1.86070 1.51997 1.53913 1.48648 1.23051 1.00514 0.92621 1.00134 1.23408 0.87392 0.97082 1.00215 1.64906 1.24582 1.04296 1.29903 1.22893 1.01513 0.90516 0.95740 1.20862 0.83153 0.87864 0.99169 0.86845 1.86770 1.16735 1.85492 1.46220 1.20662 0.95191 0.96931 0.98052 1.20915 0.99075 0.94293 0.98742 1.21115 0.97745 0.94734 1.00015 1.21152 0.94508 0.99829 0.98847 1.21144 0.99241 0.94164 0.99204 1.21032 0.97056 0.94867 0.99815 1.22880 1.00508 0.95134 0.88859 0.92404 0.76528 0.91948 0.91660 0.95332 0.90144 0.90342 0.94873 0.78268 0.86247 0.86075 0.86223 0.86038 0.85713 0.90527 0.94859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 10.88 55.43 0.60 -23.86 16 2 C 0.07 1.82 5.26 -17.82 -0.09 1.72 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.49 8.10 -34.44 -0.28 -14.77 16 8 H 0.06 1.68 7.34 -52.48 -0.39 1.29 16 9 C 0.24 6.17 0.99 -90.42 -0.09 6.08 16 10 O -0.60 -15.85 12.93 -35.23 -0.46 -16.30 16 11 C -0.12 -2.97 5.50 -24.87 -0.14 -3.10 16 12 C 0.05 0.92 4.66 -1.74 -0.01 0.91 16 13 N -0.51 -9.99 5.40 -230.20 -1.24 -11.23 16 14 C 0.02 0.35 4.87 -3.82 -0.02 0.33 16 15 C 0.15 2.00 3.30 -27.88 -0.09 1.91 16 16 H 0.11 1.56 8.05 -51.93 -0.42 1.14 16 17 O -0.55 -7.70 9.42 -35.23 -0.33 -8.03 16 18 C -0.11 -1.28 5.00 -104.62 -0.52 -1.80 16 19 C -0.11 -1.23 9.33 -39.58 -0.37 -1.60 16 20 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 21 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 23 C -0.11 -1.18 9.68 -39.59 -0.38 -1.56 16 24 C 0.05 1.20 6.16 -2.75 -0.02 1.18 16 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.38 10.36 7.05 45.56 0.32 10.68 16 27 H 0.06 1.54 8.06 -51.93 -0.42 1.13 16 28 H 0.06 1.66 7.85 -51.93 -0.41 1.25 16 29 H 0.03 0.55 6.81 -51.93 -0.35 0.19 16 30 H 0.08 1.56 6.86 -51.92 -0.36 1.20 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.03 0.53 7.81 -51.92 -0.41 0.12 16 33 H 0.37 4.34 6.70 45.56 0.31 4.65 16 34 H 0.12 1.16 6.62 -52.49 -0.35 0.81 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.08 1.72 7.39 -51.93 -0.38 1.34 16 40 H 0.03 0.74 7.38 -51.93 -0.38 0.35 16 LS Contribution 319.11 15.07 4.81 4.81 Total: -1.00 -29.30 319.11 -9.33 -38.63 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -4.48 Total: 15.29 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -3.20 Total: -15.35 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.64 Total: -35.09 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.79 Total: -24.33 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.30 -9.33 -38.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.288 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds