Wall clock time and date at job start Mon Mar 30 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48498 * 109.47536 * 269.99992 * 3 2 1 5 5 H 1.48505 * 109.47118 * 30.00411 * 3 2 1 6 6 H 1.48500 * 109.46981 * 149.99886 * 3 2 1 7 7 C 1.37874 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00428 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.27156 * 302.09303 * 9 7 2 11 11 C 1.54594 * 110.30989 * 64.28222 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.87684 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.53003 * 109.47175 * 52.66416 * 14 13 12 16 16 H 1.08995 * 109.46911 * 59.99977 * 15 14 13 17 17 O 1.42901 * 109.46874 * 299.99936 * 15 14 13 18 18 C 1.50703 * 109.47070 * 179.97438 * 15 14 13 19 19 C 1.38234 * 119.99664 * 84.72660 * 18 15 14 20 20 C 1.38238 * 119.99674 * 179.80920 * 19 18 15 21 21 C 1.38242 * 119.99992 * 0.39839 * 20 19 18 22 22 C 1.38237 * 119.99488 * 359.85591 * 21 20 19 23 23 C 1.38230 * 120.00447 * 359.95939 * 22 21 20 24 24 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 25 25 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 26 26 H 0.96695 * 114.00330 * 57.90701 * 10 9 7 27 27 H 1.08999 * 110.72754 * 259.23584 * 11 9 7 28 28 H 1.08998 * 110.72457 * 22.34151 * 11 9 7 29 29 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 30 30 H 1.09009 * 110.66924 * 203.98451 * 12 11 9 31 31 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 32 32 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 33 33 H 0.96699 * 114.00290 * 299.99906 * 17 15 14 34 34 H 1.07995 * 120.00377 * 359.97438 * 19 18 15 35 35 H 1.08001 * 120.00364 * 180.23411 * 20 19 18 36 36 H 1.07995 * 119.99632 * 179.83623 * 21 20 19 37 37 H 1.08001 * 119.99258 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00210 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.91668 * 215.45268 * 24 13 12 40 40 H 1.09002 * 109.91761 * 94.35443 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.3862 -2.5726 1.1336 11 6 0.4384 -2.6484 -1.3083 12 6 0.6034 -4.1508 -1.6491 13 7 2.0080 -4.4410 -1.2524 14 6 2.2135 -5.8801 -1.0412 15 6 1.7334 -6.6501 -2.2731 16 1 2.2991 -6.3266 -3.1468 17 8 0.3435 -6.3932 -2.4836 18 6 1.9448 -8.1264 -2.0567 19 6 0.9951 -8.8687 -1.3800 20 6 1.1871 -10.2237 -1.1849 21 6 2.3328 -10.8348 -1.6593 22 6 3.2849 -10.0913 -2.3314 23 6 3.0911 -8.7371 -2.5298 24 6 2.2345 -3.6841 -0.0020 25 1 -0.4851 0.8401 -0.0004 26 1 -0.2555 -1.8513 1.1866 27 1 -0.6104 -2.4039 -1.1404 28 1 0.8573 -2.0231 -2.0967 29 1 -0.0910 -4.7560 -1.0663 30 1 0.4586 -4.3215 -2.7160 31 1 3.2736 -6.0760 -0.8805 32 1 1.6477 -6.2035 -0.1673 33 1 -0.2215 -6.6566 -1.7444 34 1 0.1018 -8.3906 -1.0061 35 1 0.4434 -10.8044 -0.6595 36 1 2.4840 -11.8928 -1.5046 37 1 4.1802 -10.5687 -2.7017 38 1 3.8348 -8.1564 -3.0553 39 1 3.2599 -3.3156 0.0284 40 1 2.0446 -4.3245 0.8594 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829974717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:35 Heat of formation + Delta-G solvation = -86.314461 kcal Electronic energy + Delta-G solvation = -21758.505990 eV Core-core repulsion = 18537.144772 eV Total energy + Delta-G solvation = -3221.361218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.95582 -39.82172 -38.00017 -36.07295 -34.12301 -33.08480 -31.75079 -31.46809 -29.77173 -28.33608 -26.23585 -24.20433 -23.45094 -22.22685 -21.74252 -21.19029 -19.12081 -18.62072 -17.17124 -17.03835 -16.88868 -16.36400 -16.15202 -15.89207 -15.66224 -15.24216 -14.79112 -14.41512 -14.26489 -14.12942 -13.81659 -13.55182 -13.32569 -13.20781 -13.07518 -12.77217 -12.53785 -12.33244 -12.31763 -12.06590 -12.01391 -11.90086 -11.76724 -11.08470 -10.81825 -10.57334 -10.03391 -9.82696 -9.65977 -9.31597 -8.20912 -6.34701 0.39406 0.49632 1.40983 1.42268 1.52323 2.39681 2.79405 2.98703 3.12318 3.48521 3.73391 3.92630 3.95967 4.00698 4.15737 4.21376 4.29694 4.39726 4.41461 4.54559 4.58166 4.63129 4.64844 4.74287 4.92194 5.01152 5.06667 5.11494 5.16278 5.37482 5.44319 5.55573 5.61652 5.62534 5.66422 5.77896 5.99229 6.10116 6.15422 6.23539 6.67193 6.69594 7.35198 7.45156 8.85092 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041973 B = 0.003699 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.934827 B = 7566.950409 C = 7737.531483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.227 3.773 10 O -0.602 6.602 11 C -0.118 4.118 12 C 0.064 3.936 13 N -0.516 5.516 14 C 0.025 3.975 15 C 0.160 3.840 16 H 0.109 0.891 17 O -0.559 6.559 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.121 4.121 24 C 0.062 3.938 25 H 0.269 0.731 26 H 0.378 0.622 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.378 0.622 34 H 0.126 0.874 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 -19.232 -4.045 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.594 4.594 8 H 0.071 0.929 9 C 0.187 3.813 10 O -0.412 6.412 11 C -0.157 4.157 12 C -0.063 4.063 13 N -0.241 5.241 14 C -0.103 4.103 15 C 0.101 3.899 16 H 0.127 0.873 17 O -0.366 6.366 18 C -0.124 4.124 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.066 4.066 25 H 0.078 0.922 26 H 0.228 0.772 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.228 0.772 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.715 -19.280 -4.886 20.233 hybrid contribution -0.753 1.263 1.207 1.902 sum 2.962 -18.016 -3.679 18.625 Atomic orbital electron populations 1.69706 1.06827 1.28124 1.50894 1.25717 0.95883 1.02347 0.93446 0.85510 0.78622 0.78969 0.78208 1.20113 1.20500 1.19697 1.21983 0.93427 0.92253 1.51759 0.92851 1.19606 0.86756 0.92136 0.82811 1.86061 1.52042 1.53589 1.49477 1.22867 0.98933 0.95152 0.98789 1.23251 0.87987 0.94205 1.00878 1.64857 1.24121 1.06748 1.28370 1.22979 1.02290 0.88004 0.97041 1.20683 0.82689 0.88888 0.97685 0.87306 1.86721 1.17203 1.85769 1.46949 1.20517 0.96317 0.95838 0.99726 1.21114 0.99273 0.95078 0.98917 1.21422 0.98528 0.94443 0.99971 1.21533 0.93966 1.01147 0.97786 1.21465 1.00173 0.93741 0.98845 1.21248 0.96955 0.95761 0.99975 1.22698 0.99266 0.94448 0.90194 0.92165 0.77198 0.93565 0.93958 0.94317 0.89148 0.89376 0.94863 0.77166 0.85620 0.84141 0.83749 0.83796 0.84890 0.91129 0.94894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.27 10.88 21.45 0.23 -50.04 16 2 C 0.03 1.40 5.26 84.65 0.45 1.85 16 3 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.56 -31.02 8.10 25.60 0.21 -30.81 16 8 H 0.05 2.98 7.34 -2.91 -0.02 2.95 16 9 C 0.23 11.70 0.99 -10.66 -0.01 11.69 16 10 O -0.60 -32.54 12.93 -148.98 -1.93 -34.47 16 11 C -0.12 -5.75 5.50 31.80 0.17 -5.58 16 12 C 0.06 2.52 4.66 86.59 0.40 2.92 16 13 N -0.52 -19.84 5.40 -882.21 -4.77 -24.60 16 14 C 0.03 0.76 4.87 86.30 0.42 1.18 16 15 C 0.16 4.10 3.30 29.85 0.10 4.20 16 16 H 0.11 2.88 8.05 -2.39 -0.02 2.86 16 17 O -0.56 -15.04 9.42 -148.98 -1.40 -16.45 16 18 C -0.12 -2.74 5.00 -19.87 -0.10 -2.84 16 19 C -0.13 -2.55 9.33 22.27 0.21 -2.35 16 20 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 21 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 22 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 23 C -0.12 -2.39 9.68 22.27 0.22 -2.18 16 24 C 0.06 2.77 6.16 86.44 0.53 3.30 16 25 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 26 H 0.38 20.90 7.05 -74.06 -0.52 20.38 16 27 H 0.05 2.34 8.06 -2.39 -0.02 2.32 16 28 H 0.04 2.20 7.85 -2.39 -0.02 2.18 16 29 H 0.04 1.45 6.81 -2.39 -0.02 1.43 16 30 H 0.09 3.41 6.86 -2.38 -0.02 3.40 16 31 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.03 1.01 7.81 -2.38 -0.02 0.99 16 33 H 0.38 8.40 6.70 -74.06 -0.50 7.90 16 34 H 0.13 2.26 6.62 -2.91 -0.02 2.24 16 35 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.07 3.21 7.39 -2.39 -0.02 3.19 16 40 H 0.03 1.45 7.38 -2.39 -0.02 1.43 16 Total: -1.00 -62.11 319.11 -2.53 -64.64 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: 0.03 Total: 39.69 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 3.27 Total: -24.14 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -4.53 Total: -74.64 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -3.33 Total: -50.91 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -62.11 -2.53 -64.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.671 kcal (2) G-P(sol) polarization free energy of solvation -62.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds