Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38286 * 119.94438 * 2 1 4 4 C 1.38121 * 120.05203 * 179.97438 * 3 2 1 5 5 C 1.38752 * 119.94873 * 359.76968 * 4 3 2 6 6 O 1.35896 * 120.05905 * 180.27140 * 5 4 3 7 7 C 1.38713 * 119.88389 * 0.48690 * 5 4 3 8 8 C 1.50705 * 120.02603 * 179.78990 * 7 5 4 9 9 N 1.46896 * 109.47211 * 74.59719 * 8 7 5 10 10 C 1.47442 * 111.00248 * 75.62602 * 9 8 7 11 11 C 1.54316 * 107.23446 * 123.26050 * 10 9 8 12 12 C 1.55148 * 103.01823 * 22.28114 * 11 10 9 13 13 O 1.42899 * 110.98544 * 82.47652 * 12 11 10 14 14 C 1.50700 * 110.98977 * 206.25555 * 12 11 10 15 15 H 1.08007 * 119.99726 * 118.54830 * 14 12 11 16 16 C 1.37876 * 119.99969 * 298.54711 * 14 12 11 17 17 N 1.31506 * 120.00446 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99718 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47186 * 60.00004 * 18 16 14 20 20 H 1.48497 * 109.47188 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47475 * 300.00148 * 18 16 14 22 22 C 1.47846 * 111.00042 * 196.47354 * 9 8 7 23 23 C 1.38167 * 119.94682 * 359.51074 * 7 5 4 24 24 H 1.08999 * 109.47193 * 269.97901 * 1 2 3 25 25 H 1.08999 * 109.46964 * 29.97270 * 1 2 3 26 26 H 1.09001 * 109.47471 * 149.97292 * 1 2 3 27 27 H 1.07994 * 119.97251 * 0.02870 * 3 2 1 28 28 H 1.08003 * 120.02830 * 180.02562 * 4 3 2 29 29 H 0.96691 * 114.00504 * 275.21903 * 6 5 4 30 30 H 1.09002 * 109.46859 * 194.59336 * 8 7 5 31 31 H 1.08996 * 109.47273 * 314.58890 * 8 7 5 32 32 H 1.09000 * 109.89015 * 242.66521 * 10 9 8 33 33 H 1.08999 * 109.88999 * 3.85480 * 10 9 8 34 34 H 1.08994 * 110.70823 * 140.66617 * 11 10 9 35 35 H 1.09003 * 110.70264 * 263.73016 * 11 10 9 36 36 H 0.96702 * 113.99868 * 61.45598 * 13 12 11 37 37 H 0.96998 * 120.00780 * 180.02562 * 17 16 14 38 38 H 1.08999 * 110.36798 * 332.45888 * 22 9 8 39 39 H 1.09000 * 110.37259 * 94.80362 * 22 9 8 40 40 H 1.07997 * 119.97326 * 180.25129 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2735 -0.0001 0.0059 6 8 5.6324 -0.0001 0.0120 7 6 3.5787 -1.2006 0.0005 8 6 4.3303 -2.5069 0.0015 9 7 4.8872 -2.7504 1.3388 10 6 3.8368 -3.1856 2.2775 11 6 4.2759 -4.5473 2.8557 12 6 5.8129 -4.5374 2.6445 13 8 6.4687 -3.8192 3.6914 14 6 6.3519 -5.9405 2.5363 15 1 6.8461 -6.2609 1.6309 16 6 6.2143 -6.8153 3.5931 17 7 5.6122 -6.4254 4.6953 18 14 6.8831 -8.5543 3.4593 19 1 8.3485 -8.5043 3.2234 20 1 6.6101 -9.2881 4.7210 21 1 6.2231 -9.2528 2.3271 22 6 5.9383 -3.7891 1.2940 23 6 2.1970 -1.1980 0.0000 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6560 2.1327 0.0005 28 1 4.1172 2.1369 0.0010 29 1 6.0297 0.0786 -0.8660 30 1 3.6506 -3.3173 -0.2620 31 1 5.1401 -2.4607 -0.7265 32 1 3.7333 -2.4572 3.0819 33 1 2.8896 -3.2950 1.7493 34 1 4.0330 -4.6120 3.9163 35 1 3.8138 -5.3667 2.3051 36 1 6.3364 -4.1982 4.5711 37 1 5.5156 -7.0407 5.4390 38 1 5.7612 -4.4725 0.4636 39 1 6.9226 -3.3293 1.2049 40 1 1.6556 -2.1325 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843425014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = -66.258058 kcal Electronic energy + Delta-G solvation = -21844.158429 eV Core-core repulsion = 18623.666923 eV Total energy + Delta-G solvation = -3220.491507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.92433 -38.10769 -36.73376 -34.80882 -32.15498 -32.06536 -31.45406 -29.12166 -27.99442 -26.32559 -25.47883 -23.94081 -22.17445 -20.92344 -19.63410 -19.46898 -18.07960 -16.97371 -16.01663 -15.53059 -14.99589 -14.94517 -14.84512 -14.52151 -13.86759 -13.70916 -13.50836 -13.39848 -12.69848 -12.52390 -12.48039 -12.12086 -11.72489 -11.60776 -11.50517 -11.34734 -11.20856 -11.04736 -10.85461 -10.64529 -10.41974 -10.27446 -10.12844 -9.77932 -9.14575 -8.77080 -8.55628 -8.24861 -8.01104 -7.47336 -6.17131 -4.25600 1.34195 1.41357 3.25227 3.30234 3.33053 3.67087 4.32035 4.39759 4.73380 4.84846 4.96618 4.99568 5.12178 5.29417 5.32071 5.52382 5.61907 5.70208 5.70978 5.77406 5.87501 6.02213 6.07181 6.13221 6.17254 6.23120 6.38639 6.53510 6.59552 6.68743 6.75821 6.93313 6.94881 7.14463 7.47023 7.54195 7.73278 7.83115 7.88003 7.92700 8.22406 8.76452 9.43071 9.58707 10.89671 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031028 B = 0.004230 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.200376 B = 6617.721373 C = 7000.538603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C -0.112 4.112 4 C -0.151 4.151 5 C 0.125 3.875 6 O -0.480 6.480 7 C -0.087 4.087 8 C 0.095 3.905 9 N -0.512 5.512 10 C 0.046 3.954 11 C -0.144 4.144 12 C 0.252 3.748 13 O -0.577 6.577 14 C -0.537 4.537 15 H 0.060 0.940 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.061 3.939 23 C -0.100 4.100 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.380 0.620 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.376 0.624 37 H 0.266 0.734 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 11.500 -10.377 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.130 4.130 4 C -0.169 4.169 5 C 0.080 3.920 6 O -0.289 6.289 7 C -0.088 4.088 8 C -0.034 4.034 9 N -0.236 5.236 10 C -0.082 4.082 11 C -0.183 4.183 12 C 0.212 3.788 13 O -0.385 6.385 14 C -0.575 4.575 15 H 0.078 0.922 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.066 4.066 23 C -0.119 4.119 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.235 0.765 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.224 0.776 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.897 12.220 -9.923 17.611 hybrid contribution -0.190 -2.037 -0.273 2.064 sum -8.087 10.183 -10.195 16.524 Atomic orbital electron populations 1.20748 0.91310 1.02423 1.02264 1.19845 0.95985 0.93049 1.01289 1.20802 0.93544 0.97390 1.01248 1.21415 0.94594 0.97724 1.03206 1.18255 0.83205 0.91347 0.99197 1.84989 1.15427 1.95833 1.32604 1.20244 0.93443 0.95274 0.99804 1.21019 0.97064 0.92153 0.93128 1.63569 1.10748 1.43813 1.05434 1.22850 0.92176 0.97666 0.95500 1.23258 1.00204 0.93322 1.01534 1.19511 0.87225 0.88446 0.83613 1.86163 1.76217 1.56762 1.19350 1.21523 1.38354 0.96426 1.01221 0.92211 1.24991 0.94092 0.98843 0.95103 1.69731 1.42479 1.36490 1.04686 0.86551 0.79645 0.83815 0.77347 1.20048 1.21166 1.20231 1.22983 0.94486 0.91106 0.98017 1.20869 0.93068 0.97621 1.00337 0.91274 0.91815 0.91695 0.86166 0.85772 0.76548 0.94436 0.90714 0.92001 0.94793 0.90541 0.92775 0.77554 0.92364 0.93787 0.91071 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.10 -1.22 5.88 -104.60 -0.62 -1.83 16 3 C -0.11 -1.29 9.69 -39.61 -0.38 -1.67 16 4 C -0.15 -1.91 9.99 -39.43 -0.39 -2.30 16 5 C 0.13 1.84 6.68 -39.22 -0.26 1.58 16 6 O -0.48 -7.01 12.84 -19.41 -0.25 -7.26 16 7 C -0.09 -1.32 5.07 -104.47 -0.53 -1.85 16 8 C 0.09 1.58 4.33 -4.98 -0.02 1.56 16 9 N -0.51 -10.52 5.11 -232.69 -1.19 -11.71 16 10 C 0.05 0.96 6.52 -2.84 -0.02 0.94 16 11 C -0.14 -3.43 5.37 -24.91 -0.13 -3.57 16 12 C 0.25 6.47 0.87 -89.63 -0.08 6.39 16 13 O -0.58 -15.75 13.16 -35.23 -0.46 -16.21 16 14 C -0.54 -14.64 8.27 -34.44 -0.28 -14.93 16 15 H 0.06 1.61 7.79 -52.48 -0.41 1.20 16 16 C 0.07 1.94 5.29 -17.82 -0.09 1.84 16 17 N -0.89 -24.28 10.75 55.43 0.60 -23.68 16 18 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 C 0.06 1.38 5.81 -2.30 -0.01 1.37 16 23 C -0.10 -1.37 8.97 -39.60 -0.36 -1.72 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 29 H 0.38 3.52 9.06 45.56 0.41 3.93 16 30 H 0.04 0.61 7.58 -51.93 -0.39 0.22 16 31 H 0.07 1.16 7.87 -51.93 -0.41 0.75 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.03 0.64 7.02 -51.93 -0.36 0.27 16 34 H 0.08 1.93 7.54 -51.93 -0.39 1.54 16 35 H 0.05 1.31 8.04 -51.93 -0.42 0.89 16 36 H 0.38 10.24 7.56 45.56 0.34 10.59 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.04 0.95 7.70 -51.93 -0.40 0.55 16 39 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.12 1.53 8.00 -52.49 -0.42 1.11 16 LS Contribution 328.63 15.07 4.95 4.95 Total: -1.00 -30.56 328.63 -8.73 -39.29 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -4.53 Total: 13.64 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.82 Total: -14.84 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.59 Total: -35.39 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.71 Total: -23.47 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.56 -8.73 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.969 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds