Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38285 * 119.94675 * 2 1 4 4 C 1.38122 * 120.06003 * 180.02562 * 3 2 1 5 5 C 1.38765 * 119.93882 * 359.81584 * 4 3 2 6 6 O 1.35895 * 120.05435 * 180.22957 * 5 4 3 7 7 C 1.38710 * 119.88591 * 0.43916 * 5 4 3 8 8 C 1.50699 * 120.02253 * 179.79614 * 7 5 4 9 9 N 1.46897 * 109.47444 * 75.95217 * 8 7 5 10 10 C 1.48717 * 111.01974 * 80.07762 * 9 8 7 11 11 C 1.54378 * 104.51864 * 158.96628 * 10 9 8 12 12 C 1.54253 * 105.14965 * 336.27144 * 11 10 9 13 13 O 1.42904 * 110.32129 * 241.05188 * 12 11 10 14 14 C 1.50702 * 110.32529 * 118.84603 * 12 11 10 15 15 H 1.07996 * 119.99716 * 359.32036 * 14 12 11 16 16 C 1.37881 * 120.00192 * 179.32889 * 14 12 11 17 17 N 1.31507 * 120.00058 * 187.34609 * 16 14 12 18 18 Si 1.86805 * 119.99655 * 7.34420 * 16 14 12 19 19 H 1.48502 * 109.47084 * 94.50348 * 18 16 14 20 20 H 1.48508 * 109.46856 * 214.50033 * 18 16 14 21 21 H 1.48494 * 109.47307 * 334.49928 * 18 16 14 22 22 C 1.48560 * 110.99947 * 195.59005 * 9 8 7 23 23 C 1.38163 * 119.94511 * 359.51672 * 7 5 4 24 24 H 1.09001 * 109.46718 * 269.98003 * 1 2 3 25 25 H 1.09002 * 109.46875 * 29.97125 * 1 2 3 26 26 H 1.08999 * 109.47692 * 149.97706 * 1 2 3 27 27 H 1.08003 * 119.97196 * 0.02562 * 3 2 1 28 28 H 1.07991 * 120.03195 * 180.02562 * 4 3 2 29 29 H 0.96701 * 114.00225 * 265.34536 * 6 5 4 30 30 H 1.08997 * 109.47244 * 315.94619 * 8 7 5 31 31 H 1.09005 * 109.47147 * 195.95215 * 8 7 5 32 32 H 1.09004 * 110.38339 * 40.24232 * 10 9 8 33 33 H 1.08999 * 110.50798 * 277.75814 * 10 9 8 34 34 H 1.09000 * 110.32290 * 217.32172 * 11 10 9 35 35 H 1.09000 * 110.31972 * 95.21406 * 11 10 9 36 36 H 0.96704 * 114.00154 * 298.54170 * 13 12 11 37 37 H 0.97003 * 119.99922 * 180.02562 * 17 16 14 38 38 H 1.09000 * 110.41618 * 82.17839 * 22 9 8 39 39 H 1.08999 * 110.41060 * 319.73553 * 22 9 8 40 40 H 1.08002 * 119.96889 * 180.25822 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2010 -0.0005 5 6 4.2734 -0.0001 0.0028 6 8 5.6324 -0.0002 0.0070 7 6 3.5786 -1.2007 -0.0026 8 6 4.3302 -2.5068 -0.0036 9 7 4.8616 -2.7672 1.3409 10 6 3.8077 -3.3193 2.2333 11 6 4.5880 -4.0263 3.3623 12 6 5.9658 -4.3582 2.7534 13 8 6.1811 -5.7710 2.7535 14 6 7.0592 -3.6611 3.5213 15 1 6.8105 -3.0276 4.3599 16 6 8.3769 -3.8318 3.1532 17 7 9.3385 -3.3436 3.9058 18 14 8.7962 -4.7568 1.5853 19 1 8.9689 -3.7901 0.4714 20 1 10.0571 -5.5167 1.7811 21 1 7.6964 -5.6990 1.2572 22 6 5.9037 -3.8254 1.3058 23 6 2.1970 -1.1979 -0.0011 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6560 2.1328 0.0004 28 1 4.1172 2.1370 -0.0001 29 1 6.0285 -0.0728 -0.8722 30 1 5.1538 -2.4516 -0.7154 31 1 3.6559 -3.3139 -0.2903 32 1 3.1892 -4.0355 1.6924 33 1 3.1932 -2.5165 2.6407 34 1 4.0758 -4.9408 3.6612 35 1 4.7026 -3.3604 4.2176 36 1 6.1847 -6.1683 3.6352 37 1 10.2655 -3.4634 3.6466 38 1 6.8652 -3.4026 1.0147 39 1 5.6141 -4.6215 0.6198 40 1 1.6556 -2.1324 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843425015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = -51.572311 kcal Electronic energy + Delta-G solvation = -22098.027157 eV Core-core repulsion = 18878.172472 eV Total energy + Delta-G solvation = -3219.854685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.95098 -38.40363 -36.71829 -35.20142 -32.43451 -32.14039 -31.52052 -29.55612 -28.14547 -26.36601 -25.45584 -23.84020 -22.15275 -21.29706 -20.17261 -19.44486 -18.08818 -17.02451 -16.05485 -15.72054 -15.41562 -15.14956 -14.77518 -14.38477 -13.81281 -13.67866 -13.58779 -13.51003 -12.99655 -12.72547 -12.59925 -12.45311 -12.03525 -11.85002 -11.65649 -11.53720 -11.44541 -11.11821 -10.89003 -10.77188 -10.29434 -10.14011 -9.95938 -9.78408 -8.94445 -8.81352 -8.58032 -8.30064 -8.23165 -7.82197 -6.05067 -4.11240 1.32583 1.38790 3.38725 3.48528 3.64492 3.70141 4.40569 4.55767 4.56086 4.81734 4.86302 4.93831 5.21855 5.24998 5.25957 5.41903 5.48588 5.53877 5.59164 5.67046 5.75481 5.77331 5.82447 5.97852 6.05610 6.09074 6.17684 6.26266 6.36236 6.51363 6.57540 6.64228 6.72882 6.91073 6.93215 7.13315 7.46897 7.63036 7.73429 7.94142 8.36878 8.92320 9.06860 9.60263 11.06253 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.005323 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.840858 B = 5259.177568 C = 5764.577775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.103 4.103 3 C -0.109 4.109 4 C -0.145 4.145 5 C 0.129 3.871 6 O -0.479 6.479 7 C -0.094 4.094 8 C 0.087 3.913 9 N -0.481 5.481 10 C 0.039 3.961 11 C -0.138 4.138 12 C 0.218 3.782 13 O -0.580 6.580 14 C -0.532 4.532 15 H 0.076 0.924 16 C 0.084 3.916 17 N -0.892 5.892 18 Si 0.869 3.131 19 H -0.289 1.289 20 H -0.298 1.298 21 H -0.226 1.226 22 C 0.052 3.948 23 C -0.100 4.100 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.382 0.618 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.363 0.637 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.027 0.973 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.502 5.123 -10.425 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.128 4.128 4 C -0.164 4.164 5 C 0.084 3.916 6 O -0.288 6.288 7 C -0.095 4.095 8 C -0.041 4.041 9 N -0.205 5.205 10 C -0.089 4.089 11 C -0.177 4.177 12 C 0.178 3.822 13 O -0.387 6.387 14 C -0.570 4.570 15 H 0.094 0.906 16 C -0.119 4.119 17 N -0.529 5.529 18 Si 0.698 3.302 19 H -0.217 1.217 20 H -0.226 1.226 21 H -0.149 1.149 22 C -0.076 4.076 23 C -0.118 4.118 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.237 0.763 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.210 0.790 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.045 0.955 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.145 5.780 -10.241 19.175 hybrid contribution 0.214 -1.088 -0.958 1.465 sum -14.931 4.692 -11.198 19.245 Atomic orbital electron populations 1.20739 0.91318 1.02405 1.02209 1.19821 0.95941 0.93039 1.01551 1.20822 0.93517 0.97427 1.01005 1.21376 0.94441 0.97782 1.02800 1.18297 0.83381 0.91337 0.98583 1.85002 1.15233 1.95811 1.32715 1.20201 0.93544 0.95078 1.00660 1.21037 0.97458 0.92712 0.92928 1.65350 1.08617 1.39532 1.07048 1.23080 0.93919 0.96918 0.94997 1.22962 0.97189 0.99327 0.98198 1.19691 0.92175 0.79129 0.91165 1.86516 1.95296 1.23621 1.33237 1.21313 0.89793 1.29823 1.16029 0.90639 1.24968 0.96215 0.94078 0.96670 1.69954 0.99861 1.45485 1.37598 0.87091 0.78477 0.80909 0.83768 1.21657 1.22594 1.14855 1.23270 0.95277 0.91253 0.97757 1.20806 0.92948 0.97557 1.00521 0.91319 0.91793 0.91771 0.86087 0.85612 0.76294 0.90502 0.94189 0.95067 0.91235 0.92489 0.90838 0.79043 0.92721 0.90071 0.95458 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.10 -1.20 5.88 -104.60 -0.62 -1.81 16 3 C -0.11 -1.26 9.69 -39.61 -0.38 -1.65 16 4 C -0.15 -1.90 9.99 -39.43 -0.39 -2.30 16 5 C 0.13 1.97 6.68 -39.21 -0.26 1.70 16 6 O -0.48 -7.67 12.82 -19.41 -0.25 -7.92 16 7 C -0.09 -1.41 5.23 -104.48 -0.55 -1.95 16 8 C 0.09 1.42 4.63 -4.98 -0.02 1.40 16 9 N -0.48 -9.73 5.29 -231.27 -1.22 -10.95 16 10 C 0.04 0.72 6.29 -2.09 -0.01 0.71 16 11 C -0.14 -2.84 6.43 -25.35 -0.16 -3.00 16 12 C 0.22 5.19 0.90 -90.39 -0.08 5.11 16 13 O -0.58 -13.31 10.09 -35.23 -0.36 -13.67 16 14 C -0.53 -15.12 8.81 -34.44 -0.30 -15.42 16 15 H 0.08 2.35 7.60 -52.49 -0.40 1.95 16 16 C 0.08 2.47 5.43 -17.82 -0.10 2.38 16 17 N -0.89 -27.74 13.96 55.43 0.77 -26.96 16 18 Si 0.87 22.29 24.10 -169.99 -4.10 18.20 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 21 H -0.23 -5.62 5.18 56.52 0.29 -5.32 16 22 C 0.05 1.17 4.09 -2.18 -0.01 1.17 16 23 C -0.10 -1.29 9.32 -39.61 -0.37 -1.66 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 28 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.38 4.19 9.06 45.56 0.41 4.60 16 30 H 0.08 1.21 7.84 -51.93 -0.41 0.80 16 31 H 0.04 0.60 7.47 -51.93 -0.39 0.21 16 32 H 0.03 0.52 7.68 -51.93 -0.40 0.13 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.04 7.98 -51.93 -0.41 0.62 16 35 H 0.07 1.59 7.42 -51.93 -0.39 1.20 16 36 H 0.36 7.24 9.08 45.56 0.41 7.65 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 38 H 0.08 2.02 4.96 -51.93 -0.26 1.76 16 39 H 0.03 0.59 7.94 -51.93 -0.41 0.18 16 40 H 0.12 1.38 8.01 -52.49 -0.42 0.96 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -34.12 320.95 -7.64 -41.76 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.43 Total: 10.61 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -2.90 Total: -15.91 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.45 Total: -37.91 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.60 Total: -21.58 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.10 Total: 18.20 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.12 -7.64 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.808 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds