Wall clock time and date at job start Mon Mar 30 2020 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99883 * 2 1 4 4 H 1.48500 * 109.47407 * 240.00021 * 3 2 1 5 5 H 1.48503 * 109.47346 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47103 * 120.00047 * 3 2 1 7 7 C 1.37877 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00171 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47490 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47699 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47171 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99891 * 180.02562 * 12 11 10 14 14 O 1.21513 * 120.00290 * 359.97438 * 13 12 11 15 15 O 1.34641 * 120.00112 * 180.02562 * 13 12 11 16 16 C 1.45196 * 117.00069 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47145 * 179.97438 * 16 15 13 18 18 C 1.50707 * 109.47301 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 90.00016 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97953 * 18 17 16 24 24 H 0.97004 * 120.00229 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47720 * 59.99413 * 9 7 2 26 26 H 1.09008 * 109.46835 * 299.99256 * 9 7 2 27 27 H 1.09010 * 109.46914 * 59.99347 * 10 9 7 28 28 H 1.09004 * 109.47065 * 300.00011 * 10 9 7 29 29 H 1.08999 * 109.46836 * 59.99510 * 11 10 9 30 30 H 1.09000 * 109.47163 * 299.99818 * 11 10 9 31 31 H 0.96997 * 120.00007 * 359.97438 * 12 11 10 32 32 H 1.08995 * 109.47505 * 59.99605 * 16 15 13 33 33 H 1.09004 * 109.47089 * 299.99658 * 16 15 13 34 34 H 1.09005 * 109.47610 * 60.00110 * 17 16 15 35 35 H 1.09000 * 109.47256 * 299.99451 * 17 16 15 36 36 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 7 2.4323 -6.1005 -0.0049 13 6 1.9831 -7.3712 -0.0061 14 8 0.7885 -7.5933 -0.0055 15 8 2.8580 -8.3946 -0.0071 16 6 2.3031 -9.7363 -0.0078 17 6 3.4411 -10.7589 -0.0095 18 6 2.8651 -12.1516 -0.0097 19 6 2.5998 -12.7896 -1.2069 20 6 2.0720 -14.0672 -1.2070 21 6 1.8101 -14.7070 -0.0100 22 6 2.0704 -14.0669 1.1873 23 6 2.6026 -12.7911 1.1874 24 1 -0.4851 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6242 -2.5574 0.8881 27 1 2.8720 -3.6050 0.8873 28 1 2.8719 -3.6035 -0.8927 29 1 0.8533 -5.0442 -0.8930 30 1 0.8540 -5.0454 0.8869 31 1 3.3860 -5.9232 -0.0058 32 1 1.6891 -9.8751 -0.8976 33 1 1.6897 -9.8763 0.8823 34 1 4.0555 -10.6204 0.8802 35 1 4.0541 -10.6189 -0.8999 36 1 2.8048 -12.2899 -2.1422 37 1 1.8642 -14.5656 -2.1424 38 1 1.3981 -15.7054 -0.0101 39 1 1.8617 -14.5650 2.1225 40 1 2.8106 -12.2929 2.1228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858947306.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:36 Heat of formation + Delta-G solvation = -83.499383 kcal Electronic energy + Delta-G solvation = -19608.181783 eV Core-core repulsion = 16386.942636 eV Total energy + Delta-G solvation = -3221.239147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34331 -39.58527 -37.01278 -35.31795 -33.89841 -33.31981 -31.25172 -31.23388 -29.15879 -26.80003 -24.27756 -23.08716 -22.94395 -21.26280 -21.09062 -20.58527 -18.40400 -17.06012 -16.74094 -16.73949 -16.27409 -15.55849 -15.46286 -14.70754 -14.63515 -14.35772 -14.00765 -13.85606 -13.61573 -13.39012 -12.94201 -12.30686 -12.22021 -11.90470 -11.83714 -11.71174 -11.45743 -11.33455 -10.89699 -10.79219 -10.64650 -10.56426 -10.45189 -9.89740 -9.50333 -9.27951 -9.16665 -9.10584 -8.91427 -8.38044 -6.02780 -4.06067 0.93432 1.04219 2.27930 2.98435 3.31910 3.36695 3.38605 3.41667 4.21129 4.43729 4.44116 4.56687 4.67650 4.77404 4.77794 4.88939 5.14384 5.17003 5.17085 5.32971 5.48715 5.49731 5.64217 5.70218 5.70618 5.72273 6.09083 6.09978 6.15847 6.24595 6.26062 6.50086 6.55284 6.63450 6.76973 6.95811 7.61254 7.61721 7.73435 7.95417 8.35932 8.49713 9.00190 9.58132 11.08413 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.065518 B = 0.002020 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.263394 B =13857.303684 C =13958.869526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.133 3.867 12 N -0.704 5.704 13 C 0.642 3.358 14 O -0.576 6.576 15 O -0.376 6.376 16 C 0.094 3.906 17 C -0.080 4.080 18 C -0.083 4.083 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.112 4.112 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.405 0.595 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.206 -28.002 -0.025 28.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.011 3.989 12 N -0.362 5.362 13 C 0.395 3.605 14 O -0.465 6.465 15 O -0.290 6.290 16 C 0.019 3.981 17 C -0.118 4.118 18 C -0.083 4.083 19 C -0.130 4.130 20 C -0.137 4.137 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.240 0.760 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.439 -28.052 -0.024 28.781 hybrid contribution 0.706 0.942 -0.001 1.177 sum 7.145 -27.110 -0.025 28.036 Atomic orbital electron populations 1.69952 1.06056 1.26840 1.50389 1.25029 0.94873 0.99322 0.95242 0.86627 0.79541 0.83030 0.78593 1.20239 1.21275 1.20245 1.21154 0.92994 0.90877 1.51165 0.92622 1.19032 0.93818 0.90706 0.97782 1.21930 0.99918 0.92835 1.01249 1.21724 0.91149 0.83586 1.02404 1.45028 1.11665 1.02349 1.77154 1.18195 0.83576 0.81992 0.76782 1.90997 1.14982 1.84546 1.55946 1.86181 1.39800 1.15624 1.87437 1.22854 0.95578 0.76562 1.03133 1.20522 0.97179 0.89298 1.04765 1.19643 0.99894 0.95265 0.93533 1.21129 0.99047 0.95182 0.97661 1.21173 0.99185 0.95127 0.98238 1.21198 1.00094 1.00041 0.92651 1.21173 0.99164 0.95146 0.98237 1.21128 0.99031 0.95198 0.97661 0.92846 0.96161 0.96155 0.92440 0.92434 0.91422 0.91409 0.76050 0.91074 0.91068 0.89650 0.89645 0.85791 0.85925 0.86071 0.85924 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.48 16 11 C 0.13 2.32 5.67 -4.05 -0.02 2.30 16 12 N -0.70 -10.65 5.56 -65.28 -0.36 -11.01 16 13 C 0.64 10.43 8.75 54.06 0.47 10.90 16 14 O -0.58 -11.22 16.13 -19.28 -0.31 -11.53 16 15 O -0.38 -5.03 10.27 -40.33 -0.41 -5.44 16 16 C 0.09 1.04 5.46 37.15 0.20 1.24 16 17 C -0.08 -0.66 5.72 -27.88 -0.16 -0.82 16 18 C -0.08 -0.69 5.13 -104.62 -0.54 -1.23 16 19 C -0.11 -0.89 9.70 -39.58 -0.38 -1.27 16 20 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 21 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 22 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 23 C -0.11 -0.89 9.70 -39.58 -0.38 -1.27 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.41 5.07 8.58 -40.82 -0.35 4.72 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 36 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 37 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -32.43 347.42 -9.06 -41.50 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.23 Total: 0.02 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.70 Total: -9.22 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.37 Total: -36.92 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.73 Total: -16.98 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.43 -9.06 -41.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858947306.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.004 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds