Wall clock time and date at job start Mon Mar 30 2020 01:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99883 * 2 1 4 4 H 1.48500 * 109.47407 * 240.00021 * 3 2 1 5 5 H 1.48503 * 109.47346 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47103 * 120.00047 * 3 2 1 7 7 C 1.37877 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00171 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47490 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47699 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47171 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99891 * 180.02562 * 12 11 10 14 14 O 1.21513 * 120.00290 * 359.97438 * 13 12 11 15 15 O 1.34641 * 120.00112 * 180.02562 * 13 12 11 16 16 C 1.45196 * 117.00069 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47145 * 179.97438 * 16 15 13 18 18 C 1.50707 * 109.47301 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 90.00016 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97953 * 18 17 16 24 24 H 0.97004 * 120.00229 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47720 * 59.99413 * 9 7 2 26 26 H 1.09008 * 109.46835 * 299.99256 * 9 7 2 27 27 H 1.09010 * 109.46914 * 59.99347 * 10 9 7 28 28 H 1.09004 * 109.47065 * 300.00011 * 10 9 7 29 29 H 1.08999 * 109.46836 * 59.99510 * 11 10 9 30 30 H 1.09000 * 109.47163 * 299.99818 * 11 10 9 31 31 H 0.96997 * 120.00007 * 359.97438 * 12 11 10 32 32 H 1.08995 * 109.47505 * 59.99605 * 16 15 13 33 33 H 1.09004 * 109.47089 * 299.99658 * 16 15 13 34 34 H 1.09005 * 109.47610 * 60.00110 * 17 16 15 35 35 H 1.09000 * 109.47256 * 299.99451 * 17 16 15 36 36 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 7 2.4323 -6.1005 -0.0049 13 6 1.9831 -7.3712 -0.0061 14 8 0.7885 -7.5933 -0.0055 15 8 2.8580 -8.3946 -0.0071 16 6 2.3031 -9.7363 -0.0078 17 6 3.4411 -10.7589 -0.0095 18 6 2.8651 -12.1516 -0.0097 19 6 2.5998 -12.7896 -1.2069 20 6 2.0720 -14.0672 -1.2070 21 6 1.8101 -14.7070 -0.0100 22 6 2.0704 -14.0669 1.1873 23 6 2.6026 -12.7911 1.1874 24 1 -0.4851 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6242 -2.5574 0.8881 27 1 2.8720 -3.6050 0.8873 28 1 2.8719 -3.6035 -0.8927 29 1 0.8533 -5.0442 -0.8930 30 1 0.8540 -5.0454 0.8869 31 1 3.3860 -5.9232 -0.0058 32 1 1.6891 -9.8751 -0.8976 33 1 1.6897 -9.8763 0.8823 34 1 4.0555 -10.6204 0.8802 35 1 4.0541 -10.6189 -0.8999 36 1 2.8048 -12.2899 -2.1422 37 1 1.8642 -14.5656 -2.1424 38 1 1.3981 -15.7054 -0.0101 39 1 1.8617 -14.5650 2.1225 40 1 2.8106 -12.2929 2.1228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858947306.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:35 Heat of formation + Delta-G solvation = -102.584832 kcal Electronic energy + Delta-G solvation = -19609.009390 eV Core-core repulsion = 16386.942636 eV Total energy + Delta-G solvation = -3222.066754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.55644 -40.18329 -38.22215 -36.82362 -35.28162 -34.55037 -33.01693 -31.78349 -29.95811 -28.55373 -25.50284 -24.49229 -23.48343 -22.40124 -22.26808 -21.87533 -19.68794 -18.51504 -17.86261 -17.84189 -17.59264 -16.51500 -16.44329 -16.09229 -15.93524 -15.71589 -15.06295 -14.86911 -14.28248 -14.25166 -13.98424 -13.79137 -13.63184 -13.60759 -12.88067 -12.70910 -12.69425 -12.56405 -12.41830 -12.04627 -11.93416 -11.86942 -11.67545 -11.54238 -11.43260 -11.20800 -10.53082 -10.27101 -9.82895 -9.68365 -8.18001 -6.29169 0.34666 0.49286 1.12061 1.43367 1.46010 1.53867 1.67993 2.43239 2.82593 3.15869 3.19984 3.81542 3.88203 4.06004 4.10841 4.11274 4.16910 4.19997 4.29760 4.32445 4.53620 4.55300 4.62705 4.75549 4.86711 4.93411 4.94212 5.12507 5.16846 5.17172 5.25589 5.39809 5.53235 5.56342 5.62483 5.67042 5.72066 5.85700 6.10710 6.23318 6.38135 6.87980 7.25182 7.40207 8.93737 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.065518 B = 0.002020 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.263394 B =13857.303684 C =13958.869526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.146 3.854 12 N -0.691 5.691 13 C 0.644 3.356 14 O -0.612 6.612 15 O -0.366 6.366 16 C 0.090 3.910 17 C -0.068 4.068 18 C -0.097 4.097 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.125 4.125 24 H 0.263 0.737 25 H -0.005 1.005 26 H -0.005 1.005 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.421 0.579 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.106 -28.705 -0.027 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.024 3.976 12 N -0.351 5.351 13 C 0.397 3.603 14 O -0.504 6.504 15 O -0.279 6.279 16 C 0.016 3.984 17 C -0.106 4.106 18 C -0.098 4.098 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.143 4.143 24 H 0.072 0.928 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.258 0.742 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.394 -28.779 -0.026 29.979 hybrid contribution 0.084 1.051 0.000 1.054 sum 8.478 -27.728 -0.027 28.996 Atomic orbital electron populations 1.70099 1.07880 1.27829 1.51621 1.26010 0.95756 1.03506 0.94842 0.85477 0.78179 0.78006 0.79228 1.19074 1.21245 1.19085 1.21652 0.93794 0.91981 1.50521 0.91480 1.18946 0.94435 0.92708 0.95366 1.21627 0.98587 0.91252 1.02556 1.21344 0.91072 0.83701 1.01510 1.44721 1.12091 1.01606 1.76704 1.18266 0.83297 0.82571 0.76174 1.90978 1.16705 1.85147 1.57531 1.86202 1.38889 1.15965 1.86876 1.23090 0.96883 0.75840 1.02595 1.20455 0.96120 0.88314 1.05672 1.19718 1.00750 0.95300 0.93987 1.21359 0.99225 0.95720 0.97990 1.21467 0.98895 0.95073 0.99240 1.21526 0.99633 1.00948 0.92511 1.21468 0.98875 0.95093 0.99239 1.21357 0.99210 0.95734 0.97990 0.92835 0.98665 0.98661 0.91052 0.91044 0.92446 0.92431 0.74205 0.91671 0.91666 0.88744 0.88738 0.84929 0.84239 0.84137 0.84238 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 11 C 0.15 5.07 5.67 86.38 0.49 5.56 16 12 N -0.69 -19.99 5.56 -590.86 -3.29 -23.28 16 13 C 0.64 20.40 8.75 129.79 1.14 21.53 16 14 O -0.61 -23.90 16.13 19.80 0.32 -23.58 16 15 O -0.37 -9.33 10.27 -55.51 -0.57 -9.90 16 16 C 0.09 1.94 5.46 71.98 0.39 2.33 16 17 C -0.07 -1.03 5.72 29.85 0.17 -0.86 16 18 C -0.10 -1.53 5.13 -19.86 -0.10 -1.63 16 19 C -0.13 -1.85 9.70 22.27 0.22 -1.64 16 20 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 21 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 22 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 23 C -0.12 -1.85 9.70 22.27 0.22 -1.64 16 24 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 25 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 27 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 28 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.42 9.56 8.58 -92.71 -0.80 8.76 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.09 1.25 8.09 -2.38 -0.02 1.23 16 35 H 0.09 1.25 8.09 -2.39 -0.02 1.23 16 36 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -69.47 347.42 3.19 -66.28 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.22 Total: 13.66 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 4.20 Total: -12.37 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -3.00 Total: -79.61 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.25 Total: -33.48 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -69.47 3.19 -66.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858947306.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.303 kcal (2) G-P(sol) polarization free energy of solvation -69.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds