Wall clock time and date at job start Mon Mar 30 2020 01:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86797 * 120.00365 * 2 1 4 4 H 1.48496 * 109.47424 * 240.00726 * 3 2 1 5 5 H 1.48509 * 109.46915 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47184 * 119.99869 * 3 2 1 7 7 C 1.38650 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00471 * 180.02562 * 7 2 1 9 9 O 1.34834 * 120.00183 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00191 * 185.06539 * 9 7 2 11 11 C 1.38964 * 120.02998 * 174.44580 * 10 9 7 12 12 C 1.38122 * 120.07834 * 180.02562 * 11 10 9 13 13 C 1.38190 * 120.14324 * 359.95694 * 12 11 10 14 14 C 1.38967 * 120.06273 * 0.04899 * 13 12 11 15 15 N 1.39678 * 120.03943 * 179.97438 * 14 13 12 16 16 C 1.46498 * 120.00093 * 0.02562 * 15 14 13 17 17 C 1.52997 * 109.46849 * 180.02562 * 16 15 14 18 18 C 1.53009 * 109.46976 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.46976 * 180.02562 * 18 17 16 20 20 H 1.09000 * 113.03523 * 43.02682 * 19 18 17 21 21 C 1.54042 * 113.86122 * 174.99704 * 19 18 17 22 22 C 1.54042 * 85.82012 * 136.72760 * 21 19 18 23 23 O 1.44177 * 113.86454 * 270.86687 * 19 18 17 24 24 C 1.38718 * 120.03312 * 354.47266 * 10 9 7 25 25 H 0.97003 * 120.00079 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.95536 * 0.02999 * 11 10 9 27 27 H 1.08000 * 119.93085 * 179.97438 * 12 11 10 28 28 H 1.08004 * 119.97134 * 180.02562 * 13 12 11 29 29 H 0.97002 * 119.99984 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.47304 * 300.00155 * 16 15 14 31 31 H 1.08994 * 109.46874 * 60.00068 * 16 15 14 32 32 H 1.08995 * 109.47779 * 299.99938 * 17 16 15 33 33 H 1.09002 * 109.47519 * 60.00416 * 17 16 15 34 34 H 1.09003 * 109.46581 * 300.00206 * 18 17 16 35 35 H 1.08994 * 109.46895 * 59.99549 * 18 17 16 36 36 H 1.08995 * 113.81460 * 250.95022 * 21 19 18 37 37 H 1.08995 * 113.81442 * 22.38365 * 21 19 18 38 38 H 1.08996 * 113.86522 * 91.56888 * 22 21 19 39 39 H 1.08996 * 113.86533 * 223.14687 * 22 21 19 40 40 H 1.08006 * 120.06934 * 0.24937 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1057 11 6 1.4353 -4.7348 0.2284 12 6 2.1824 -5.8914 0.3371 13 6 3.5629 -5.8296 0.3234 14 6 4.2037 -4.6026 0.2011 15 7 5.5990 -4.5407 0.1878 16 6 6.3879 -5.7698 0.3023 17 6 7.8779 -5.4250 0.2619 18 6 8.7019 -6.7088 0.3808 19 6 10.1920 -6.3639 0.3410 20 1 10.4441 -5.4916 0.9441 21 6 11.1178 -7.5725 0.5757 22 6 11.9602 -7.0093 -0.5845 23 8 10.7495 -6.3385 -0.9883 24 6 3.4555 -3.4387 0.0925 25 1 -0.4850 0.8401 0.0004 26 1 0.3566 -4.7864 0.2387 27 1 1.6867 -6.8461 0.4327 28 1 4.1444 -6.7358 0.4082 29 1 6.0457 -3.6839 0.1028 30 1 6.1552 -6.2644 1.2454 31 1 6.1459 -6.4352 -0.5263 32 1 8.1110 -4.9302 -0.6809 33 1 8.1196 -4.7597 1.0908 34 1 8.4689 -7.2040 1.3235 35 1 8.4602 -7.3737 -0.4483 36 1 11.6280 -7.5556 1.5387 37 1 10.6513 -8.5331 0.3576 38 1 12.7537 -6.3333 -0.2657 39 1 12.3029 -7.7671 -1.2890 40 1 3.9510 -2.4833 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877169046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:48 Heat of formation + Delta-G solvation = -44.962879 kcal Electronic energy + Delta-G solvation = -20209.247528 eV Core-core repulsion = 16989.679450 eV Total energy + Delta-G solvation = -3219.568078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.22519 -40.75180 -38.83101 -36.80355 -34.47575 -34.03050 -31.18557 -30.49964 -29.86526 -27.94387 -27.18359 -24.81767 -23.50686 -22.42090 -21.97804 -21.22626 -19.71423 -18.97395 -17.51237 -17.21238 -16.89874 -16.74376 -16.65441 -16.12597 -16.00149 -15.76471 -15.44001 -15.25820 -14.47516 -14.15111 -13.98229 -13.70707 -13.47987 -13.33101 -13.24665 -12.93911 -12.57060 -12.50656 -12.39349 -12.16860 -11.97426 -11.83590 -11.66245 -11.36504 -11.22962 -10.92099 -10.60594 -10.58973 -9.09983 -8.44861 -8.23094 -6.13365 0.76750 0.92464 1.34098 1.46039 1.50753 2.19066 2.54943 2.76999 2.89752 3.27271 3.40310 3.59952 3.72448 4.01161 4.12998 4.19102 4.26244 4.29743 4.41133 4.50799 4.56474 4.60946 4.63372 4.69474 4.77558 4.84381 4.89454 5.06286 5.08761 5.12660 5.14103 5.16556 5.26084 5.33574 5.47352 5.49791 5.75783 5.80863 6.04699 6.12170 6.60974 6.86862 7.00200 7.83477 8.78560 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.003001 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.476452 B = 9327.423456 C =10543.301965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.412 4.412 8 H 0.098 0.902 9 O -0.232 6.232 10 C 0.151 3.849 11 C -0.262 4.262 12 C -0.026 4.026 13 C -0.265 4.265 14 C 0.253 3.747 15 N -0.748 5.748 16 C 0.128 3.872 17 C -0.122 4.122 18 C -0.109 4.109 19 C 0.055 3.945 20 H 0.098 0.902 21 C -0.175 4.175 22 C 0.024 3.976 23 O -0.417 6.417 24 C -0.318 4.318 25 H 0.272 0.728 26 H 0.107 0.893 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.398 0.602 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.508 -15.244 2.929 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.488 4.488 8 H 0.116 0.884 9 O -0.138 6.138 10 C 0.100 3.900 11 C -0.283 4.283 12 C -0.044 4.044 13 C -0.288 4.288 14 C 0.149 3.851 15 N -0.378 5.378 16 C 0.005 3.995 17 C -0.160 4.160 18 C -0.146 4.146 19 C -0.002 4.002 20 H 0.115 0.885 21 C -0.212 4.212 22 C -0.052 4.052 23 O -0.337 6.337 24 C -0.342 4.342 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.171 0.829 28 H 0.160 0.840 29 H 0.233 0.767 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 23.103 -15.177 2.679 27.772 hybrid contribution 0.086 1.379 -0.119 1.387 sum 23.189 -13.798 2.560 27.105 Atomic orbital electron populations 1.70186 1.07991 1.28779 1.49077 1.26594 0.96875 1.02711 0.95964 0.84653 0.77397 0.74329 0.79834 1.18272 1.19497 1.18202 1.21749 0.92388 0.81557 1.53122 0.88447 1.83946 1.35898 1.12635 1.81352 1.19658 0.90858 0.87773 0.91725 1.20276 0.99644 0.90736 1.17627 1.20840 0.93332 0.96877 0.93398 1.20571 0.94557 0.95910 1.17741 1.17592 0.84060 0.92875 0.90588 1.44739 1.01579 1.09684 1.81836 1.21409 0.90343 0.86408 1.01341 1.21678 0.92738 0.98928 1.02606 1.21594 0.91874 0.97066 1.04102 1.23702 0.94653 0.98413 0.83462 0.88469 1.24636 0.96796 0.99341 1.00434 1.24032 0.88776 0.95870 0.96549 1.89741 1.32544 1.82430 1.28968 1.20525 0.93153 0.98216 1.22329 0.91877 0.87487 0.82899 0.83970 0.76739 0.91450 0.92439 0.92407 0.90643 0.88084 0.91025 0.89178 0.88200 0.89186 0.88404 0.86950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.13 13.67 21.61 0.30 -57.84 16 2 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 3 Si 1.02 44.10 29.55 68.60 2.03 46.13 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.41 -24.94 9.49 67.92 0.64 -24.30 16 8 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 9 O -0.23 -14.62 9.76 -22.79 -0.22 -14.84 16 10 C 0.15 7.99 6.65 22.56 0.15 8.14 16 11 C -0.26 -11.90 9.99 22.42 0.22 -11.68 16 12 C -0.03 -0.92 10.03 22.23 0.22 -0.69 16 13 C -0.27 -8.84 9.31 22.43 0.21 -8.63 16 14 C 0.25 9.39 6.65 38.20 0.25 9.65 16 15 N -0.75 -21.37 5.73 -339.49 -1.95 -23.31 16 16 C 0.13 2.63 4.91 86.38 0.42 3.06 16 17 C -0.12 -2.00 5.32 30.60 0.16 -1.84 16 18 C -0.11 -1.40 5.29 30.60 0.16 -1.23 16 19 C 0.05 0.73 4.44 30.89 0.14 0.87 16 20 H 0.10 1.16 8.12 -2.39 -0.02 1.14 16 21 C -0.17 -1.59 7.93 31.30 0.25 -1.34 16 22 C 0.02 0.27 9.21 72.28 0.67 0.94 16 23 O -0.42 -8.05 12.29 -148.98 -1.83 -9.88 16 24 C -0.32 -14.79 9.01 22.52 0.20 -14.59 16 25 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 26 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 27 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 28 H 0.14 3.69 6.72 -2.91 -0.02 3.67 16 29 H 0.40 10.84 8.48 -92.71 -0.79 10.05 16 30 H 0.07 1.26 7.95 -2.39 -0.02 1.24 16 31 H 0.06 1.19 7.95 -2.39 -0.02 1.17 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.10 0.82 8.10 -2.39 -0.02 0.80 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 5.34 5.63 -2.91 -0.02 5.32 16 Total: -1.00 -76.24 335.61 2.75 -73.49 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.25 Total: 28.86 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 4.17 Total: -42.60 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.65 Total: -81.15 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -2.05 Total: -24.72 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -76.24 2.75 -73.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877169046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.525 kcal (2) G-P(sol) polarization free energy of solvation -76.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds