Wall clock time and date at job start Mon Mar 30 2020 01:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38238 * 119.96948 * 2 1 4 4 C 1.38490 * 120.12470 * 180.18651 * 3 2 1 5 5 C 1.39308 * 119.95077 * 359.57729 * 4 3 2 6 6 C 1.38468 * 119.89888 * 0.21079 * 5 4 3 7 7 C 1.38821 * 119.97042 * 179.76543 * 2 1 3 8 8 N 1.39928 * 120.00328 * 0.04456 * 7 2 1 9 9 C 1.46497 * 119.99736 * 179.97438 * 8 7 2 10 10 C 1.53002 * 109.46817 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47274 * 55.00047 * 10 9 8 12 12 C 1.52999 * 109.46929 * 294.99753 * 10 9 8 13 13 C 1.53006 * 109.46889 * 174.99712 * 10 9 8 14 14 C 1.50707 * 109.46730 * 184.99794 * 13 10 9 15 15 H 1.07993 * 120.00453 * 0.02562 * 14 13 10 16 16 C 1.37875 * 119.99761 * 180.02562 * 14 13 10 17 17 N 1.31518 * 119.99985 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00226 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46916 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47387 * 119.99796 * 18 16 14 21 21 H 1.48498 * 109.47866 * 240.00267 * 18 16 14 22 22 O 1.36507 * 108.64369 * 180.25046 * 5 4 3 23 23 C 1.43980 * 105.50441 * 342.68957 * 22 5 4 24 24 O 1.36635 * 131.45000 * 179.87988 * 4 3 2 25 25 H 1.08997 * 109.46913 * 270.23545 * 1 2 3 26 26 H 1.09002 * 109.47397 * 30.23147 * 1 2 3 27 27 H 1.08994 * 109.47246 * 150.23549 * 1 2 3 28 28 H 1.08001 * 119.94216 * 0.09751 * 3 2 1 29 29 H 1.08003 * 120.01079 * 179.97438 * 6 5 4 30 30 H 0.96996 * 119.99683 * 359.97438 * 8 7 2 31 31 H 1.09002 * 109.47584 * 299.99817 * 9 8 7 32 32 H 1.08993 * 109.47487 * 60.00047 * 9 8 7 33 33 H 1.09001 * 109.46737 * 180.02562 * 12 10 9 34 34 H 1.09003 * 109.47057 * 299.99908 * 12 10 9 35 35 H 1.08993 * 109.47294 * 60.00161 * 12 10 9 36 36 H 1.08990 * 109.47487 * 304.99782 * 13 10 9 37 37 H 1.09004 * 109.47004 * 65.00240 * 13 10 9 38 38 H 0.97003 * 120.00249 * 180.02562 * 17 16 14 39 39 H 1.08997 * 110.57067 * 268.59912 * 23 22 5 40 40 H 1.09002 * 110.57315 * 145.72635 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.1975 0.0000 4 6 3.5824 1.2013 -0.0039 5 6 4.2812 -0.0038 0.0011 6 6 3.5890 -1.2031 0.0055 7 6 2.2004 -1.2026 0.0049 8 7 1.5002 -2.4141 0.0089 9 6 2.2322 -3.6830 0.0136 10 6 1.2374 -4.8455 0.0167 11 1 0.5539 -4.7411 -0.8259 12 6 0.4418 -4.8324 1.3235 13 6 1.9978 -6.1677 -0.1043 14 6 1.0144 -7.3034 -0.2247 15 1 -0.0466 -7.1023 -0.2163 16 6 1.4694 -8.5993 -0.3457 17 7 2.7615 -8.8444 -0.3555 18 14 0.2507 -10.0071 -0.4943 19 1 -1.1332 -9.4698 -0.4567 20 1 0.4702 -10.7184 -1.7792 21 1 0.4460 -10.9523 0.6343 22 8 5.6190 0.2675 0.0014 23 6 5.7334 1.6406 -0.4162 24 8 4.4841 2.2279 -0.0069 25 1 -0.3633 0.0042 1.0276 26 1 -0.3634 0.8879 -0.5174 27 1 -0.3633 -0.8920 -0.5101 28 1 1.6560 2.1320 0.0016 29 1 4.1289 -2.1384 0.0089 30 1 0.5303 -2.4136 0.0087 31 1 2.8591 -3.7442 -0.8760 32 1 2.8585 -3.7380 0.9039 33 1 -0.2666 -5.6608 1.3259 34 1 1.1254 -4.9369 2.1661 35 1 -0.0998 -3.8905 1.4097 36 1 2.6331 -6.1419 -0.9895 37 1 2.6152 -6.3142 0.7820 38 1 3.0817 -9.7560 -0.4409 39 1 5.8499 1.7035 -1.4981 40 1 6.5684 2.1263 0.0888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877188367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:57 Heat of formation + Delta-G solvation = -53.397068 kcal Electronic energy + Delta-G solvation = -20994.013601 eV Core-core repulsion = 17774.079789 eV Total energy + Delta-G solvation = -3219.933812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.03029 -38.99331 -36.43331 -36.14559 -33.71079 -32.18206 -31.95848 -28.92470 -27.15522 -26.88847 -26.08272 -24.92252 -23.24415 -21.87429 -21.68210 -19.48816 -18.01179 -17.49776 -17.30311 -16.46108 -16.16467 -15.23852 -15.02340 -14.69624 -14.46085 -14.29839 -13.87927 -13.69590 -13.45112 -12.92897 -12.85805 -12.68584 -12.47355 -12.35638 -12.11667 -12.01861 -11.61216 -11.10207 -11.01452 -10.94768 -10.74887 -10.42296 -10.38036 -9.91616 -9.37633 -9.29895 -9.07266 -8.47937 -8.40198 -7.05004 -6.04457 -4.06497 1.24081 1.46587 2.78644 3.27936 3.35943 3.38742 3.42177 3.66491 3.76585 4.42430 4.60855 4.63393 4.82064 4.94737 4.99347 5.19407 5.31543 5.34373 5.51227 5.57168 5.63970 5.64334 5.78371 5.85743 5.93082 6.14551 6.15439 6.23027 6.27245 6.35297 6.38268 6.47722 6.78897 6.95966 6.99827 7.14575 7.45699 7.59128 7.72167 7.87569 7.94044 8.36079 8.99436 9.57551 11.06927 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030083 B = 0.003294 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.548499 B = 8499.077298 C = 9279.030593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.166 4.166 3 C -0.049 4.049 4 C -0.042 4.042 5 C 0.079 3.921 6 C -0.179 4.179 7 C 0.241 3.759 8 N -0.732 5.732 9 C 0.122 3.878 10 C -0.096 4.096 11 H 0.062 0.938 12 C -0.132 4.132 13 C 0.030 3.970 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 O -0.311 6.311 23 C 0.215 3.785 24 O -0.315 6.315 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.130 0.870 29 H 0.137 0.863 30 H 0.402 0.598 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.030 0.970 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.078 0.922 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 20.412 0.226 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.171 4.171 3 C -0.068 4.068 4 C -0.088 4.088 5 C 0.034 3.966 6 C -0.203 4.203 7 C 0.135 3.865 8 N -0.361 5.361 9 C -0.002 4.002 10 C -0.115 4.115 11 H 0.081 0.919 12 C -0.190 4.190 13 C -0.008 4.008 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 O -0.227 6.227 23 C 0.103 3.897 24 O -0.232 6.232 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.239 0.761 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.460 20.160 0.322 20.167 hybrid contribution -0.531 -0.807 -0.173 0.982 sum -0.072 19.353 0.149 19.353 Atomic orbital electron populations 1.20529 0.90460 1.02516 1.02107 1.19002 0.95973 0.90440 1.11709 1.19533 0.88769 0.98024 1.00493 1.19397 0.91837 0.84947 1.12576 1.19393 0.81984 0.94424 1.00793 1.19402 0.91768 0.95878 1.13224 1.17206 0.89902 0.86370 0.93062 1.45104 1.08433 1.02464 1.80136 1.21714 0.95549 0.82076 1.00848 1.21443 0.96829 0.95528 0.97662 0.91912 1.21729 1.00079 0.99814 0.97362 1.19088 0.95281 0.89021 0.97403 1.21220 0.93006 0.91316 1.49905 0.92484 1.25017 0.95075 0.98971 0.95413 1.69970 1.12623 1.20209 1.50565 0.86560 0.81477 0.82463 0.77642 1.19768 1.21049 1.21046 1.87341 1.21334 1.29582 1.84468 1.25494 0.87946 0.76606 0.99678 1.87310 1.18504 1.31457 1.85935 0.91456 0.91481 0.91838 0.85231 0.84559 0.76126 0.92321 0.92340 0.91704 0.93400 0.95095 0.96414 0.96258 0.93026 0.90408 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.57 36.00 0.34 -0.58 16 2 C -0.17 -2.02 5.90 -104.41 -0.62 -2.63 16 3 C -0.05 -0.59 9.70 -39.49 -0.38 -0.98 16 4 C -0.04 -0.58 7.15 -39.09 -0.28 -0.86 16 5 C 0.08 1.16 7.14 -39.10 -0.28 0.88 16 6 C -0.18 -2.64 9.32 -39.27 -0.37 -3.01 16 7 C 0.24 3.34 6.63 -83.72 -0.56 2.79 16 8 N -0.73 -10.13 5.37 -58.61 -0.31 -10.44 16 9 C 0.12 1.96 4.30 -4.04 -0.02 1.94 16 10 C -0.10 -1.79 2.37 -90.62 -0.22 -2.00 16 11 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 12 C -0.13 -2.30 8.88 37.16 0.33 -1.97 16 13 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 14 C -0.52 -13.88 8.41 -34.44 -0.29 -14.17 16 15 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 O -0.31 -4.29 11.40 -45.71 -0.52 -4.82 16 23 C 0.21 2.18 8.89 101.05 0.90 3.07 16 24 O -0.32 -4.06 11.41 -46.13 -0.53 -4.58 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.06 0.58 6.53 -51.93 -0.34 0.24 16 28 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.14 2.02 6.73 -52.48 -0.35 1.66 16 30 H 0.40 5.02 5.64 -40.82 -0.23 4.79 16 31 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 32 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 33 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.44 7.18 -51.93 -0.37 0.07 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -30.41 327.93 -8.14 -38.56 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.79 Total: 1.18 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.65 Total: -15.45 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.42 Total: -35.97 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.05 Total: -9.40 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.41 -8.14 -38.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877188367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.838 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds