Wall clock time and date at job start Mon Mar 30 2020 02:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34720 * 116.99914 * 2 1 4 4 O 1.21469 * 119.99629 * 359.97438 * 3 2 1 5 5 C 1.47722 * 120.00148 * 179.97438 * 3 2 1 6 6 C 1.39644 * 120.14954 * 353.77573 * 5 3 2 7 7 C 1.37927 * 119.84897 * 180.02562 * 6 5 3 8 8 C 1.50694 * 119.92772 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47155 * 270.02471 * 8 7 6 10 10 C 1.46900 * 110.99963 * 66.04523 * 9 8 7 11 11 C 1.46901 * 111.00170 * 189.99679 * 9 8 7 12 12 C 1.50698 * 109.47250 * 169.99902 * 11 9 8 13 13 H 1.07998 * 119.99774 * 0.02562 * 12 11 9 14 14 C 1.37877 * 119.99831 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00356 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99613 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.46882 * 90.00533 * 16 14 12 18 18 H 1.48504 * 109.46823 * 210.00185 * 16 14 12 19 19 H 1.48493 * 109.47142 * 330.00209 * 16 14 12 20 20 C 1.38388 * 120.14840 * 0.02562 * 7 6 5 21 21 C 1.38349 * 120.30245 * 0.27136 * 20 7 6 22 22 C 1.37969 * 120.14811 * 359.44818 * 21 20 7 23 23 C 1.50705 * 120.07342 * 180.27888 * 22 21 20 24 24 H 1.09001 * 109.46924 * 60.00218 * 1 2 3 25 25 H 1.08997 * 109.46562 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47425 * 300.00087 * 1 2 3 27 27 H 1.08007 * 120.07710 * 0.04114 * 6 5 3 28 28 H 1.09002 * 109.47204 * 30.01890 * 8 7 6 29 29 H 1.08998 * 109.47544 * 150.02597 * 8 7 6 30 30 H 1.09001 * 109.47228 * 60.00179 * 10 9 8 31 31 H 1.08999 * 109.47398 * 180.02562 * 10 9 8 32 32 H 1.09000 * 109.47376 * 300.00007 * 10 9 8 33 33 H 1.08998 * 109.46943 * 290.00148 * 11 9 8 34 34 H 1.09001 * 109.46756 * 49.99528 * 11 9 8 35 35 H 0.97001 * 120.00180 * 179.97438 * 15 14 12 36 36 H 1.07994 * 119.84947 * 179.97438 * 20 7 6 37 37 H 1.08001 * 119.92390 * 179.70734 * 21 20 7 38 38 H 1.08997 * 109.46733 * 263.69667 * 23 22 21 39 39 H 1.08998 * 109.47028 * 23.69908 * 23 22 21 40 40 H 1.08994 * 109.46825 * 143.69843 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3020 0.1157 0.1320 7 6 5.6790 0.1952 0.1323 8 6 6.5044 -1.0575 0.2746 9 7 6.7631 -1.3144 1.6977 10 6 5.5185 -1.6331 2.4099 11 6 7.7555 -2.3841 1.8677 12 6 8.1771 -2.4533 3.3128 13 1 7.7501 -1.7712 4.0331 14 6 9.1070 -3.3882 3.7157 15 7 9.6265 -4.2191 2.8387 16 14 9.6290 -3.4743 5.5072 17 1 8.7380 -4.4110 6.2378 18 1 11.0308 -3.9572 5.5917 19 1 9.5333 -2.1234 6.1162 20 6 6.3044 1.4230 0.0032 21 6 5.5543 2.5788 -0.1212 22 6 4.1762 2.5130 -0.1288 23 6 3.3608 3.7725 -0.2708 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.8152 -0.8431 0.2330 28 1 5.9622 -1.9005 -0.1539 29 1 7.4515 -0.9302 -0.2496 30 1 5.0661 -2.5223 1.9709 31 1 5.7386 -1.8184 3.4612 32 1 4.8270 -0.7947 2.3262 33 1 7.3171 -3.3369 1.5710 34 1 8.6254 -2.1749 1.2450 35 1 10.2811 -4.8766 3.1220 36 1 7.3828 1.4797 0.0045 37 1 6.0486 3.5342 -0.2169 38 1 3.0586 4.1228 0.7161 39 1 3.9598 4.5398 -0.7611 40 1 2.4742 3.5656 -0.8701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878175525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:49 Heat of formation + Delta-G solvation = -57.229865 kcal Electronic energy + Delta-G solvation = -21156.765415 eV Core-core repulsion = 17936.665400 eV Total energy + Delta-G solvation = -3220.100015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75952 -39.13463 -36.85541 -36.22176 -33.16439 -32.12459 -31.54590 -28.66065 -27.77098 -27.01787 -25.74718 -23.84699 -23.30707 -21.78456 -20.68851 -19.90394 -17.71945 -16.85188 -16.49733 -16.26766 -15.56521 -15.42062 -14.94551 -14.53361 -14.29944 -13.97924 -13.75480 -13.55054 -13.33179 -13.02496 -12.35632 -12.31283 -12.24960 -11.94649 -11.89444 -11.73964 -11.37022 -11.12867 -10.98633 -10.92580 -10.84358 -10.67234 -10.42751 -10.14057 -9.86729 -9.24530 -8.96279 -8.54341 -8.42574 -7.27716 -6.04141 -4.05420 0.74445 1.38602 2.52193 2.60306 3.31285 3.37573 3.42178 3.76013 4.42532 4.60541 4.78880 4.84448 4.92923 5.00177 5.05125 5.18224 5.23892 5.30753 5.32791 5.48075 5.65647 5.67819 5.71481 5.81854 5.99959 6.03340 6.13901 6.21229 6.24687 6.32345 6.33391 6.54357 6.71541 6.76849 6.92663 7.24880 7.31176 7.66196 7.77789 8.04714 8.16392 8.51506 9.02224 9.58898 11.06720 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023937 B = 0.003750 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.464065 B = 7465.413333 C = 8004.762457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.511 3.489 4 O -0.507 6.507 5 C -0.139 4.139 6 C -0.052 4.052 7 C -0.081 4.081 8 C 0.089 3.911 9 N -0.535 5.535 10 C 0.034 3.966 11 C 0.192 3.808 12 C -0.507 4.507 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.055 4.055 21 C -0.137 4.137 22 C -0.027 4.027 23 C -0.120 4.120 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.134 0.866 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.012 0.988 31 H 0.074 0.926 32 H 0.046 0.954 33 H -0.008 1.008 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.035 10.931 -8.251 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.358 3.642 4 O -0.398 6.398 5 C -0.140 4.140 6 C -0.070 4.070 7 C -0.081 4.081 8 C -0.039 4.039 9 N -0.259 5.259 10 C -0.114 4.114 11 C 0.067 3.933 12 C -0.546 4.546 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.074 4.074 21 C -0.155 4.155 22 C -0.028 4.028 23 C -0.176 4.176 24 H 0.080 0.920 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.010 0.990 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.929 11.473 -8.055 19.761 hybrid contribution -0.141 -0.952 0.676 1.176 sum -14.070 10.521 -7.379 19.055 Atomic orbital electron populations 1.23256 0.76189 1.03733 1.02443 1.86586 1.23379 1.32829 1.84304 1.21298 0.89229 0.81240 0.72450 1.90764 1.67086 1.35515 1.46410 1.18823 0.88495 0.94738 1.11981 1.21363 0.93493 0.97584 0.94600 1.19969 0.93130 0.96091 0.98934 1.21061 0.98170 0.92366 0.92339 1.62166 1.10340 1.46514 1.06863 1.22286 0.91329 0.97307 1.00518 1.19763 0.89357 0.86356 0.97779 1.21154 1.23250 1.16572 0.93579 0.91837 1.24981 0.96251 0.95569 0.97772 1.69955 1.29690 1.20363 1.33870 0.86503 0.77735 0.78338 0.84891 1.20750 1.21247 1.19752 1.21379 1.00685 0.91473 0.93832 1.20987 0.92448 0.98880 1.03167 1.19930 0.94029 0.93756 0.95041 1.21070 0.99958 0.93444 1.03142 0.91969 0.88031 0.91861 0.84856 0.94729 0.90176 0.96975 0.90684 0.93482 0.99014 0.95116 0.92913 0.84983 0.85231 0.90756 0.92180 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.40 9.84 -40.55 -0.40 -4.80 16 3 C 0.51 7.04 7.83 34.61 0.27 7.32 16 4 O -0.51 -7.42 13.14 -19.24 -0.25 -7.68 16 5 C -0.14 -1.94 5.87 -104.99 -0.62 -2.56 16 6 C -0.05 -0.74 7.52 -39.17 -0.29 -1.04 16 7 C -0.08 -1.22 4.88 -104.68 -0.51 -1.73 16 8 C 0.09 1.54 5.11 -4.98 -0.03 1.51 16 9 N -0.53 -11.32 4.74 -245.82 -1.17 -12.49 16 10 C 0.03 0.67 8.95 60.06 0.54 1.21 16 11 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 12 C -0.51 -14.10 8.46 -34.44 -0.29 -14.40 16 13 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 16 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 20 C -0.06 -0.75 9.69 -39.49 -0.38 -1.13 16 21 C -0.14 -1.66 9.66 -39.64 -0.38 -2.04 16 22 C -0.03 -0.35 5.92 -104.21 -0.62 -0.96 16 23 C -0.12 -1.35 8.73 36.01 0.31 -1.03 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.13 1.85 7.60 -52.48 -0.40 1.45 16 28 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 29 H 0.08 1.35 7.87 -51.93 -0.41 0.94 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 32 H 0.05 0.82 6.16 -51.93 -0.32 0.50 16 33 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 34 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.54 8.04 -51.93 -0.42 0.13 16 40 H 0.09 1.08 5.86 -51.93 -0.30 0.78 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -30.97 333.89 -8.04 -39.01 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.92 Total: -2.74 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.05 Total: -7.10 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.43 Total: -38.21 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.65 Total: -12.48 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.97 -8.04 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878175525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.215 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds