Wall clock time and date at job start Mon Mar 30 2020 02:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34720 * 116.99914 * 2 1 4 4 O 1.21469 * 119.99629 * 359.97438 * 3 2 1 5 5 C 1.47722 * 120.00148 * 179.97438 * 3 2 1 6 6 C 1.39644 * 120.14954 * 353.77573 * 5 3 2 7 7 C 1.37927 * 119.84897 * 180.02562 * 6 5 3 8 8 C 1.50694 * 119.92772 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47155 * 270.02471 * 8 7 6 10 10 C 1.46900 * 110.99963 * 66.04523 * 9 8 7 11 11 C 1.46901 * 111.00170 * 189.99679 * 9 8 7 12 12 C 1.50698 * 109.47250 * 169.99902 * 11 9 8 13 13 H 1.07998 * 119.99774 * 0.02562 * 12 11 9 14 14 C 1.37877 * 119.99831 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00356 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99613 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.46882 * 90.00533 * 16 14 12 18 18 H 1.48504 * 109.46823 * 210.00185 * 16 14 12 19 19 H 1.48493 * 109.47142 * 330.00209 * 16 14 12 20 20 C 1.38388 * 120.14840 * 0.02562 * 7 6 5 21 21 C 1.38349 * 120.30245 * 0.27136 * 20 7 6 22 22 C 1.37969 * 120.14811 * 359.44818 * 21 20 7 23 23 C 1.50705 * 120.07342 * 180.27888 * 22 21 20 24 24 H 1.09001 * 109.46924 * 60.00218 * 1 2 3 25 25 H 1.08997 * 109.46562 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47425 * 300.00087 * 1 2 3 27 27 H 1.08007 * 120.07710 * 0.04114 * 6 5 3 28 28 H 1.09002 * 109.47204 * 30.01890 * 8 7 6 29 29 H 1.08998 * 109.47544 * 150.02597 * 8 7 6 30 30 H 1.09001 * 109.47228 * 60.00179 * 10 9 8 31 31 H 1.08999 * 109.47398 * 180.02562 * 10 9 8 32 32 H 1.09000 * 109.47376 * 300.00007 * 10 9 8 33 33 H 1.08998 * 109.46943 * 290.00148 * 11 9 8 34 34 H 1.09001 * 109.46756 * 49.99528 * 11 9 8 35 35 H 0.97001 * 120.00180 * 179.97438 * 15 14 12 36 36 H 1.07994 * 119.84947 * 179.97438 * 20 7 6 37 37 H 1.08001 * 119.92390 * 179.70734 * 21 20 7 38 38 H 1.08997 * 109.46733 * 263.69667 * 23 22 21 39 39 H 1.08998 * 109.47028 * 23.69908 * 23 22 21 40 40 H 1.08994 * 109.46825 * 143.69843 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3020 0.1157 0.1320 7 6 5.6790 0.1952 0.1323 8 6 6.5044 -1.0575 0.2746 9 7 6.7631 -1.3144 1.6977 10 6 5.5185 -1.6331 2.4099 11 6 7.7555 -2.3841 1.8677 12 6 8.1771 -2.4533 3.3128 13 1 7.7501 -1.7712 4.0331 14 6 9.1070 -3.3882 3.7157 15 7 9.6265 -4.2191 2.8387 16 14 9.6290 -3.4743 5.5072 17 1 8.7380 -4.4110 6.2378 18 1 11.0308 -3.9572 5.5917 19 1 9.5333 -2.1234 6.1162 20 6 6.3044 1.4230 0.0032 21 6 5.5543 2.5788 -0.1212 22 6 4.1762 2.5130 -0.1288 23 6 3.3608 3.7725 -0.2708 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.8152 -0.8431 0.2330 28 1 5.9622 -1.9005 -0.1539 29 1 7.4515 -0.9302 -0.2496 30 1 5.0661 -2.5223 1.9709 31 1 5.7386 -1.8184 3.4612 32 1 4.8270 -0.7947 2.3262 33 1 7.3171 -3.3369 1.5710 34 1 8.6254 -2.1749 1.2450 35 1 10.2811 -4.8766 3.1220 36 1 7.3828 1.4797 0.0045 37 1 6.0486 3.5342 -0.2169 38 1 3.0586 4.1228 0.7161 39 1 3.9598 4.5398 -0.7611 40 1 2.4742 3.5656 -0.8701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878175525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:49 Heat of formation + Delta-G solvation = -75.186727 kcal Electronic energy + Delta-G solvation = -21157.544083 eV Core-core repulsion = 17936.665400 eV Total energy + Delta-G solvation = -3220.878683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.77490 -40.22920 -38.20503 -37.44716 -34.90073 -33.65827 -32.57069 -30.00412 -28.83477 -28.61867 -27.14419 -25.11094 -24.76003 -22.79218 -22.33923 -21.10306 -18.78599 -18.49391 -17.72236 -17.44874 -16.81662 -16.65751 -16.48582 -16.03160 -15.59869 -15.46050 -14.89036 -14.80818 -14.45676 -13.96321 -13.93049 -13.55006 -13.44444 -13.18667 -13.07011 -12.99045 -12.77267 -12.71817 -12.54750 -12.41190 -12.38113 -12.07234 -11.80641 -11.77271 -11.28189 -11.12062 -10.60706 -10.01019 -9.62745 -9.00806 -8.19067 -6.28782 -0.30809 0.31960 1.42637 1.43528 1.47698 1.55374 1.70493 2.41480 2.68001 3.13774 3.46873 3.64854 3.75168 3.88959 3.98791 4.18405 4.28198 4.33096 4.38895 4.46715 4.55386 4.65970 4.70482 4.73122 4.76325 4.80881 4.83715 4.98831 5.07353 5.11163 5.19643 5.22772 5.32187 5.36510 5.54866 5.62035 5.66264 5.89052 6.05556 6.31131 6.61061 6.66089 6.87004 7.40827 8.91814 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023937 B = 0.003750 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.464065 B = 7465.413333 C = 8004.762457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.510 3.490 4 O -0.520 6.520 5 C -0.151 4.151 6 C -0.054 4.054 7 C -0.095 4.095 8 C 0.092 3.908 9 N -0.541 5.541 10 C 0.041 3.959 11 C 0.207 3.793 12 C -0.523 4.523 13 H 0.062 0.938 14 C 0.004 3.996 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.266 1.266 20 C -0.059 4.059 21 C -0.128 4.128 22 C -0.029 4.029 23 C -0.116 4.116 24 H 0.067 0.933 25 H 0.129 0.871 26 H 0.064 0.936 27 H 0.133 0.867 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.014 0.986 31 H 0.056 0.944 32 H 0.069 0.931 33 H -0.035 1.035 34 H 0.010 0.990 35 H 0.264 0.736 36 H 0.140 0.860 37 H 0.161 0.839 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.633 12.396 -7.812 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.357 3.643 4 O -0.412 6.412 5 C -0.152 4.152 6 C -0.072 4.072 7 C -0.096 4.096 8 C -0.036 4.036 9 N -0.265 5.265 10 C -0.107 4.107 11 C 0.081 3.919 12 C -0.561 4.561 13 H 0.080 0.920 14 C -0.194 4.194 15 N -0.574 5.574 16 Si 0.792 3.208 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.190 1.190 20 C -0.078 4.078 21 C -0.146 4.146 22 C -0.029 4.029 23 C -0.172 4.172 24 H 0.086 0.914 25 H 0.147 0.853 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.088 0.912 33 H -0.018 1.018 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.158 0.842 37 H 0.179 0.821 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.552 12.943 -7.625 20.915 hybrid contribution -0.044 -1.373 0.462 1.449 sum -14.596 11.570 -7.163 19.955 Atomic orbital electron populations 1.23569 0.74219 1.05711 1.02796 1.86573 1.25382 1.32182 1.83916 1.21304 0.89249 0.81469 0.72238 1.90754 1.67349 1.35915 1.47159 1.18992 0.88828 0.95092 1.12329 1.21315 0.93210 0.97897 0.94827 1.19749 0.93156 0.95544 1.01133 1.21041 0.98813 0.93808 0.89899 1.62064 1.10462 1.44349 1.09621 1.22220 0.90986 0.98370 0.99170 1.19419 0.89651 0.86415 0.96452 1.21458 1.23465 1.16656 0.94570 0.92031 1.25866 0.96177 0.95064 1.02339 1.70074 1.30274 1.21024 1.36068 0.85416 0.77427 0.78641 0.79342 1.19932 1.20708 1.18991 1.21548 1.01336 0.91394 0.93479 1.21282 0.92062 0.99625 1.01595 1.20263 0.94648 0.94040 0.93966 1.21057 0.99713 0.93255 1.03156 0.91421 0.85328 0.91727 0.84950 0.94656 0.90164 0.96776 0.92483 0.91201 1.01778 0.97220 0.92675 0.84182 0.82095 0.90794 0.89597 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.36 -8.68 9.84 -56.30 -0.55 -9.23 16 3 C 0.51 13.56 7.83 70.33 0.55 14.11 16 4 O -0.52 -14.66 13.14 19.94 0.26 -14.40 16 5 C -0.15 -4.04 5.87 -20.10 -0.12 -4.15 16 6 C -0.05 -1.50 7.52 22.54 0.17 -1.33 16 7 C -0.10 -2.80 4.88 -19.90 -0.10 -2.89 16 8 C 0.09 3.20 5.11 85.55 0.44 3.64 16 9 N -0.54 -23.15 4.74 -931.65 -4.42 -27.57 16 10 C 0.04 1.60 8.95 127.69 1.14 2.74 16 11 C 0.21 10.89 4.72 85.56 0.40 11.30 16 12 C -0.52 -29.51 8.46 25.60 0.22 -29.29 16 13 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 14 C 0.00 0.20 5.46 84.65 0.46 0.67 16 15 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 16 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 C -0.06 -1.50 9.69 22.33 0.22 -1.29 16 21 C -0.13 -2.76 9.66 22.23 0.21 -2.54 16 22 C -0.03 -0.68 5.92 -19.60 -0.12 -0.79 16 23 C -0.12 -2.32 8.73 71.24 0.62 -1.69 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 25 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.13 3.63 7.60 -2.91 -0.02 3.60 16 28 H 0.04 1.22 8.06 -2.39 -0.02 1.20 16 29 H 0.08 2.75 7.87 -2.39 -0.02 2.73 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 2.42 6.76 -2.39 -0.02 2.40 16 32 H 0.07 2.40 6.16 -2.39 -0.01 2.38 16 33 H -0.04 -2.03 8.12 -2.39 -0.02 -2.04 16 34 H 0.01 0.54 7.93 -2.39 -0.02 0.52 16 35 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 1.26 8.04 -2.39 -0.02 1.24 16 40 H 0.08 1.77 5.86 -2.39 -0.01 1.75 16 Total: -1.00 -66.34 333.89 3.92 -62.42 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.02 Total: 8.02 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.30 Total: -9.85 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -4.14 Total: -83.04 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.29 Total: -23.63 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -66.34 3.92 -62.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878175525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.770 kcal (2) G-P(sol) polarization free energy of solvation -66.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds