Wall clock time and date at job start Mon Mar 30 2020 02:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34715 * 117.00017 * 2 1 4 4 O 1.21468 * 119.99783 * 359.97438 * 3 2 1 5 5 C 1.47733 * 119.99971 * 180.02562 * 3 2 1 6 6 C 1.39643 * 120.15039 * 353.76833 * 5 3 2 7 7 C 1.37919 * 119.84827 * 180.02562 * 6 5 3 8 8 C 1.50701 * 119.92473 * 180.02562 * 7 6 5 9 9 N 1.46907 * 109.46978 * 90.00054 * 8 7 6 10 10 C 1.46905 * 110.99768 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47329 * 35.00063 * 10 9 8 12 12 C 1.53004 * 109.46997 * 274.99872 * 10 9 8 13 13 C 1.50700 * 109.46804 * 154.99832 * 10 9 8 14 14 H 1.07994 * 120.00211 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99679 * 179.97438 * 13 10 9 16 16 N 1.31517 * 119.99643 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99934 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47074 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47215 * 119.99940 * 17 15 13 20 20 H 1.48497 * 109.46899 * 239.99876 * 17 15 13 21 21 C 1.38384 * 120.14925 * 0.27054 * 7 6 5 22 22 C 1.38348 * 120.30371 * 359.45636 * 21 7 6 23 23 C 1.37967 * 120.14680 * 0.54082 * 22 21 7 24 24 C 1.50706 * 120.07447 * 179.70517 * 23 22 21 25 25 H 1.08994 * 109.46965 * 60.00145 * 1 2 3 26 26 H 1.09002 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47377 * 300.00022 * 1 2 3 28 28 H 1.08005 * 120.07702 * 0.04580 * 6 5 3 29 29 H 1.08995 * 109.47292 * 330.00171 * 8 7 6 30 30 H 1.08996 * 109.47316 * 209.99383 * 8 7 6 31 31 H 1.00897 * 110.99749 * 303.95113 * 9 8 7 32 32 H 1.09004 * 109.46794 * 300.00163 * 12 10 9 33 33 H 1.08998 * 109.46703 * 59.99946 * 12 10 9 34 34 H 1.08991 * 109.47096 * 180.02562 * 12 10 9 35 35 H 0.97002 * 119.99293 * 180.02562 * 16 15 13 36 36 H 1.08007 * 119.84794 * 179.72853 * 21 7 6 37 37 H 1.07998 * 119.92356 * 180.25359 * 22 21 7 38 38 H 1.09001 * 109.47047 * 263.44571 * 24 23 22 39 39 H 1.09002 * 109.46905 * 23.44976 * 24 23 22 40 40 H 1.08996 * 109.46890 * 143.45093 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3021 0.1156 0.1300 7 6 5.6790 0.1950 0.1292 8 6 6.5045 -1.0580 0.2694 9 7 6.7805 -1.6141 -1.0621 10 6 7.5845 -2.8396 -0.9644 11 1 7.2975 -3.3922 -0.0697 12 6 9.0674 -2.4716 -0.8829 13 6 7.3455 -3.6955 -2.1816 14 1 6.6648 -3.3622 -2.9509 15 6 7.9967 -4.9037 -2.3134 16 7 8.8268 -5.3088 -1.3772 17 14 7.7010 -5.9643 -3.8224 18 1 6.7307 -5.2879 -4.7204 19 1 8.9834 -6.1687 -4.5428 20 1 7.1535 -7.2795 -3.4034 21 6 6.3043 1.4233 0.0050 22 6 5.5542 2.5779 -0.1303 23 6 4.1761 2.5128 -0.1311 24 6 3.3606 3.7723 -0.2720 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.8154 -0.8433 0.2310 29 1 5.9560 -1.7900 0.8622 30 1 7.4452 -0.8198 0.7656 31 1 5.9240 -1.7833 -1.5679 32 1 9.3543 -1.9191 -1.7777 33 1 9.2401 -1.8525 -0.0026 34 1 9.6640 -3.3809 -0.8109 35 1 9.2852 -6.1586 -1.4702 36 1 7.3828 1.4803 0.0094 37 1 6.0486 3.5328 -0.2309 38 1 3.0596 4.1226 0.7153 39 1 3.9592 4.5397 -0.7629 40 1 2.4733 3.5656 -0.8703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878820260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:52 Heat of formation + Delta-G solvation = -65.008175 kcal Electronic energy + Delta-G solvation = -20962.964711 eV Core-core repulsion = 17742.527403 eV Total energy + Delta-G solvation = -3220.437308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74195 -39.05435 -36.68883 -35.89736 -33.46046 -31.87120 -31.52620 -29.12668 -27.88409 -26.78455 -25.26362 -24.04872 -23.37620 -21.75517 -20.19543 -19.77452 -17.81218 -16.96055 -16.48119 -16.30586 -15.55232 -15.44417 -14.89977 -14.44560 -14.13096 -13.88687 -13.62538 -13.53416 -13.10116 -13.00237 -12.40256 -12.35668 -12.24008 -11.89839 -11.83140 -11.57234 -11.30510 -11.05863 -10.90749 -10.80335 -10.74573 -10.28436 -10.19061 -10.13752 -9.94306 -8.99529 -8.86412 -8.55572 -8.45862 -7.31807 -6.04721 -4.11054 0.73682 1.37889 2.51636 2.62163 3.27803 3.35845 3.40255 3.76559 4.39407 4.60774 4.78446 4.84284 4.95079 5.02187 5.06197 5.22998 5.26769 5.31983 5.45712 5.52303 5.65610 5.68502 5.75595 5.83870 6.04748 6.07781 6.22334 6.25583 6.32612 6.53886 6.72141 6.85350 6.92362 7.10782 7.19589 7.46218 7.67011 7.76419 7.86508 8.24582 8.34290 8.62575 8.99170 9.55116 11.01614 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.003911 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.785719 B = 7157.278863 C = 8131.884398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.353 6.353 3 C 0.511 3.489 4 O -0.508 6.508 5 C -0.137 4.137 6 C -0.053 4.053 7 C -0.085 4.085 8 C 0.095 3.905 9 N -0.682 5.682 10 C 0.210 3.790 11 H 0.002 0.998 12 C -0.124 4.124 13 C -0.518 4.518 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.056 4.056 22 C -0.137 4.137 23 C -0.027 4.027 24 C -0.120 4.120 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.135 0.865 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.332 0.668 32 H 0.031 0.969 33 H 0.004 0.996 34 H 0.081 0.919 35 H 0.260 0.740 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.300 13.514 4.694 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.358 3.642 4 O -0.398 6.398 5 C -0.139 4.139 6 C -0.072 4.072 7 C -0.086 4.086 8 C -0.034 4.034 9 N -0.314 5.314 10 C 0.103 3.897 11 H 0.020 0.980 12 C -0.183 4.183 13 C -0.556 4.556 14 H 0.079 0.921 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.075 4.075 22 C -0.155 4.155 23 C -0.028 4.028 24 C -0.176 4.176 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.080 0.920 28 H 0.153 0.847 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.149 0.851 32 H 0.051 0.949 33 H 0.023 0.977 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.855 14.022 4.628 18.327 hybrid contribution -0.890 -1.292 -0.463 1.635 sum -11.745 12.730 4.166 17.814 Atomic orbital electron populations 1.23261 0.76161 1.03791 1.02406 1.86592 1.23399 1.32754 1.84229 1.21297 0.89232 0.81262 0.72445 1.90761 1.67103 1.35526 1.46448 1.18835 0.88544 0.94723 1.11758 1.21375 0.93500 0.97585 0.94718 1.20054 0.93161 0.95989 0.99391 1.20915 0.97505 0.91476 0.93494 1.60826 1.23060 1.34022 1.13468 1.19151 0.90313 0.84063 0.96200 0.98007 1.21718 0.99329 1.00479 0.96756 1.21292 1.26113 1.02799 1.05410 0.92136 1.24916 0.94983 0.97619 0.96466 1.69909 1.28348 1.21285 1.33335 0.86467 0.78072 0.80131 0.82897 1.19736 1.20966 1.21093 1.21375 1.00583 0.91539 0.93955 1.20988 0.92467 0.98927 1.03142 1.19936 0.94025 0.93811 0.94985 1.21073 1.00067 0.93454 1.03033 0.91888 0.87979 0.91961 0.84696 0.95060 0.90677 0.85059 0.94937 0.97706 0.90059 0.92972 0.85086 0.85261 0.90852 0.92142 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.35 -4.51 9.84 -40.53 -0.40 -4.90 16 3 C 0.51 7.11 7.83 34.61 0.27 7.38 16 4 O -0.51 -7.45 13.13 -19.24 -0.25 -7.71 16 5 C -0.14 -1.92 5.87 -104.98 -0.62 -2.54 16 6 C -0.05 -0.76 9.26 -39.17 -0.36 -1.12 16 7 C -0.09 -1.27 5.39 -104.68 -0.56 -1.84 16 8 C 0.10 1.65 5.61 -4.97 -0.03 1.62 16 9 N -0.68 -14.20 6.29 -109.21 -0.69 -14.89 16 10 C 0.21 5.22 2.60 -68.86 -0.18 5.04 16 11 H 0.00 0.06 7.80 -51.93 -0.40 -0.34 16 12 C -0.12 -3.04 9.19 37.16 0.34 -2.70 16 13 C -0.52 -14.03 8.59 -34.44 -0.30 -14.33 16 14 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 15 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 17 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C -0.06 -0.75 9.69 -39.49 -0.38 -1.13 16 22 C -0.14 -1.64 9.66 -39.64 -0.38 -2.03 16 23 C -0.03 -0.35 5.91 -104.21 -0.62 -0.96 16 24 C -0.12 -1.34 8.73 36.01 0.31 -1.03 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.14 1.87 7.63 -52.48 -0.40 1.47 16 29 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 30 H 0.07 1.29 7.38 -51.93 -0.38 0.90 16 31 H 0.33 6.88 8.21 -39.29 -0.32 6.56 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 34 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.55 8.04 -51.93 -0.42 0.14 16 40 H 0.09 1.12 5.85 -51.93 -0.30 0.81 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -29.64 334.82 -8.06 -37.70 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.84 Total: 3.83 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.53 Total: -10.63 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: -0.06 Total: -39.41 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.65 Total: -12.61 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.64 -8.06 -37.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878820260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.312 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds