Wall clock time and date at job start Mon Mar 30 2020 02:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34715 * 117.00017 * 2 1 4 4 O 1.21468 * 119.99783 * 359.97438 * 3 2 1 5 5 C 1.47733 * 119.99971 * 180.02562 * 3 2 1 6 6 C 1.39643 * 120.15039 * 353.76833 * 5 3 2 7 7 C 1.37919 * 119.84827 * 180.02562 * 6 5 3 8 8 C 1.50701 * 119.92473 * 180.02562 * 7 6 5 9 9 N 1.46907 * 109.46978 * 90.00054 * 8 7 6 10 10 C 1.46905 * 110.99768 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47329 * 35.00063 * 10 9 8 12 12 C 1.53004 * 109.46997 * 274.99872 * 10 9 8 13 13 C 1.50700 * 109.46804 * 154.99832 * 10 9 8 14 14 H 1.07994 * 120.00211 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99679 * 179.97438 * 13 10 9 16 16 N 1.31517 * 119.99643 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99934 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47074 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47215 * 119.99940 * 17 15 13 20 20 H 1.48497 * 109.46899 * 239.99876 * 17 15 13 21 21 C 1.38384 * 120.14925 * 0.27054 * 7 6 5 22 22 C 1.38348 * 120.30371 * 359.45636 * 21 7 6 23 23 C 1.37967 * 120.14680 * 0.54082 * 22 21 7 24 24 C 1.50706 * 120.07447 * 179.70517 * 23 22 21 25 25 H 1.08994 * 109.46965 * 60.00145 * 1 2 3 26 26 H 1.09002 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47377 * 300.00022 * 1 2 3 28 28 H 1.08005 * 120.07702 * 0.04580 * 6 5 3 29 29 H 1.08995 * 109.47292 * 330.00171 * 8 7 6 30 30 H 1.08996 * 109.47316 * 209.99383 * 8 7 6 31 31 H 1.00897 * 110.99749 * 303.95113 * 9 8 7 32 32 H 1.09004 * 109.46794 * 300.00163 * 12 10 9 33 33 H 1.08998 * 109.46703 * 59.99946 * 12 10 9 34 34 H 1.08991 * 109.47096 * 180.02562 * 12 10 9 35 35 H 0.97002 * 119.99293 * 180.02562 * 16 15 13 36 36 H 1.08007 * 119.84794 * 179.72853 * 21 7 6 37 37 H 1.07998 * 119.92356 * 180.25359 * 22 21 7 38 38 H 1.09001 * 109.47047 * 263.44571 * 24 23 22 39 39 H 1.09002 * 109.46905 * 23.44976 * 24 23 22 40 40 H 1.08996 * 109.46890 * 143.45093 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3021 0.1156 0.1300 7 6 5.6790 0.1950 0.1292 8 6 6.5045 -1.0580 0.2694 9 7 6.7805 -1.6141 -1.0621 10 6 7.5845 -2.8396 -0.9644 11 1 7.2975 -3.3922 -0.0697 12 6 9.0674 -2.4716 -0.8829 13 6 7.3455 -3.6955 -2.1816 14 1 6.6648 -3.3622 -2.9509 15 6 7.9967 -4.9037 -2.3134 16 7 8.8268 -5.3088 -1.3772 17 14 7.7010 -5.9643 -3.8224 18 1 6.7307 -5.2879 -4.7204 19 1 8.9834 -6.1687 -4.5428 20 1 7.1535 -7.2795 -3.4034 21 6 6.3043 1.4233 0.0050 22 6 5.5542 2.5779 -0.1303 23 6 4.1761 2.5128 -0.1311 24 6 3.3606 3.7723 -0.2720 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.8154 -0.8433 0.2310 29 1 5.9560 -1.7900 0.8622 30 1 7.4452 -0.8198 0.7656 31 1 5.9240 -1.7833 -1.5679 32 1 9.3543 -1.9191 -1.7777 33 1 9.2401 -1.8525 -0.0026 34 1 9.6640 -3.3809 -0.8109 35 1 9.2852 -6.1586 -1.4702 36 1 7.3828 1.4803 0.0094 37 1 6.0486 3.5328 -0.2309 38 1 3.0596 4.1226 0.7153 39 1 3.9592 4.5397 -0.7629 40 1 2.4733 3.5656 -0.8703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878820260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:52 Heat of formation + Delta-G solvation = -81.758713 kcal Electronic energy + Delta-G solvation = -20963.691069 eV Core-core repulsion = 17742.527403 eV Total energy + Delta-G solvation = -3221.163665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.76344 -40.11685 -37.89173 -37.39541 -35.03530 -33.45362 -32.54801 -30.68705 -28.82010 -28.04946 -27.24769 -25.23458 -24.60038 -22.76092 -21.75991 -21.22869 -18.97946 -18.46192 -17.70106 -17.44964 -16.88365 -16.59910 -16.49555 -15.71177 -15.50288 -15.33073 -14.86389 -14.65852 -14.45516 -13.96628 -13.89271 -13.61213 -13.24712 -13.08674 -13.02578 -12.90278 -12.82334 -12.59621 -12.54486 -12.35796 -12.17766 -12.05787 -11.80985 -11.72803 -11.13482 -10.87458 -10.56994 -10.02271 -9.63269 -9.04314 -8.12516 -6.26231 -0.31264 0.32377 1.41940 1.44130 1.46908 1.55659 1.70511 2.42393 2.70422 3.16494 3.55834 3.72014 3.87981 3.90634 4.01947 4.21192 4.27005 4.32083 4.40491 4.55271 4.68078 4.72544 4.74778 4.81699 4.84148 4.86679 5.00379 5.10064 5.12108 5.22056 5.26197 5.35855 5.48871 5.54902 5.62523 5.68395 5.88080 5.89413 6.24594 6.46104 6.65347 6.76343 6.98936 7.44170 8.93153 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.003911 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.785719 B = 7157.278863 C = 8131.884398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.509 3.491 4 O -0.520 6.520 5 C -0.151 4.151 6 C -0.057 4.057 7 C -0.099 4.099 8 C 0.101 3.899 9 N -0.679 5.679 10 C 0.213 3.787 11 H -0.027 1.027 12 C -0.113 4.113 13 C -0.537 4.537 14 H 0.057 0.943 15 C 0.015 3.985 16 N -0.917 5.917 17 Si 0.961 3.039 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.058 4.058 22 C -0.128 4.128 23 C -0.029 4.029 24 C -0.116 4.116 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.067 0.933 28 H 0.131 0.869 29 H 0.025 0.975 30 H 0.077 0.923 31 H 0.331 0.669 32 H 0.028 0.972 33 H 0.026 0.974 34 H 0.056 0.944 35 H 0.262 0.738 36 H 0.143 0.857 37 H 0.163 0.837 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.745 14.808 4.169 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.357 3.643 4 O -0.411 6.411 5 C -0.152 4.152 6 C -0.076 4.076 7 C -0.100 4.100 8 C -0.028 4.028 9 N -0.309 5.309 10 C 0.105 3.895 11 H -0.010 1.010 12 C -0.171 4.171 13 C -0.575 4.575 14 H 0.076 0.924 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.786 3.214 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.076 4.076 22 C -0.146 4.146 23 C -0.029 4.029 24 C -0.172 4.172 25 H 0.084 0.916 26 H 0.146 0.854 27 H 0.086 0.914 28 H 0.149 0.851 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.161 0.839 37 H 0.180 0.820 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.315 15.324 4.109 19.487 hybrid contribution -0.817 -1.644 -0.252 1.854 sum -12.132 13.680 3.857 18.687 Atomic orbital electron populations 1.23568 0.74222 1.05685 1.02824 1.86579 1.25407 1.32273 1.83898 1.21335 0.89321 0.81441 0.72246 1.90750 1.67365 1.35859 1.47175 1.19000 0.88793 0.95144 1.12287 1.21331 0.93411 0.97815 0.95040 1.19827 0.93069 0.95535 1.01560 1.20860 0.98057 0.92382 0.91503 1.60739 1.22855 1.31727 1.15622 1.18964 0.91202 0.85144 0.94173 1.00978 1.21538 0.98590 0.99519 0.97503 1.21607 1.26180 1.03619 1.06084 0.92438 1.25695 0.94728 0.98844 0.99187 1.70027 1.28981 1.21697 1.34919 0.85467 0.78014 0.78383 0.79506 1.19215 1.20579 1.20632 1.21558 1.01360 0.91306 0.93379 1.21300 0.91998 0.99773 1.01513 1.20274 0.94739 0.94005 0.93923 1.21060 0.99647 0.93239 1.03253 0.91604 0.85434 0.91428 0.85075 0.95653 0.90471 0.85178 0.95307 0.95549 0.92518 0.92841 0.83937 0.81988 0.90426 0.89673 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.37 -9.14 9.84 -56.25 -0.55 -9.70 16 3 C 0.51 13.90 7.83 70.33 0.55 14.45 16 4 O -0.52 -14.87 13.13 19.94 0.26 -14.61 16 5 C -0.15 -4.10 5.87 -20.10 -0.12 -4.22 16 6 C -0.06 -1.62 9.26 22.53 0.21 -1.41 16 7 C -0.10 -2.89 5.39 -19.90 -0.11 -3.00 16 8 C 0.10 3.48 5.61 85.56 0.48 3.96 16 9 N -0.68 -28.30 6.29 -499.44 -3.14 -31.44 16 10 C 0.21 10.75 2.60 44.17 0.11 10.87 16 11 H -0.03 -1.51 7.80 -2.39 -0.02 -1.53 16 12 C -0.11 -5.54 9.19 71.98 0.66 -4.88 16 13 C -0.54 -29.33 8.59 25.60 0.22 -29.11 16 14 H 0.06 3.11 7.62 -2.91 -0.02 3.08 16 15 C 0.01 0.81 5.30 84.66 0.45 1.26 16 16 N -0.92 -52.37 11.32 21.45 0.24 -52.13 16 17 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 21 C -0.06 -1.42 9.69 22.33 0.22 -1.20 16 22 C -0.13 -2.70 9.66 22.23 0.21 -2.49 16 23 C -0.03 -0.68 5.91 -19.60 -0.12 -0.80 16 24 C -0.12 -2.32 8.73 71.24 0.62 -1.70 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.13 3.71 7.63 -2.91 -0.02 3.69 16 29 H 0.03 0.90 8.00 -2.39 -0.02 0.88 16 30 H 0.08 2.60 7.38 -2.39 -0.02 2.58 16 31 H 0.33 13.83 8.21 -89.70 -0.74 13.10 16 32 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.03 1.12 7.45 -2.39 -0.02 1.11 16 34 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 35 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 37 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.27 8.04 -2.39 -0.02 1.25 16 40 H 0.07 1.76 5.85 -2.39 -0.01 1.75 16 Total: -1.00 -63.05 334.82 3.73 -59.32 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.30 Total: 19.85 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 4.59 Total: -16.57 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.90 Total: -83.57 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.29 Total: -24.31 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -63.05 3.73 -59.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878820260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.443 kcal (2) G-P(sol) polarization free energy of solvation -63.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds