Wall clock time and date at job start Mon Mar 30 2020 01:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47158 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47265 * 119.99969 * 9 7 5 12 12 H 1.48503 * 109.46681 * 239.99686 * 9 7 5 13 13 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 14 14 C 1.46900 * 110.99890 * 274.99873 * 13 2 1 15 15 H 1.09003 * 109.64231 * 35.00192 * 14 13 2 16 16 C 1.53026 * 109.64471 * 274.58348 * 14 13 2 17 17 C 1.50168 * 110.09492 * 191.09668 * 16 14 13 18 18 C 1.29438 * 124.14851 * 16.71003 * 17 16 14 19 19 C 1.50073 * 124.07600 * 359.76684 * 18 17 16 20 20 C 1.53023 * 110.14749 * 17.12588 * 19 18 17 21 21 H 1.08997 * 109.63955 * 70.25084 * 20 19 18 22 22 C 1.52999 * 109.81457 * 190.77859 * 20 19 18 23 23 F 1.39906 * 109.46682 * 179.05172 * 22 20 19 24 24 F 1.39901 * 109.47268 * 299.04930 * 22 20 19 25 25 F 1.39898 * 109.47062 * 59.05217 * 22 20 19 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 30 30 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 31 31 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00276 * 151.05158 * 13 2 1 33 33 H 1.09001 * 109.35176 * 311.08452 * 16 14 13 34 34 H 1.08998 * 109.35843 * 70.67070 * 16 14 13 35 35 H 1.07996 * 117.88550 * 196.92193 * 17 16 14 36 36 H 1.08004 * 117.96360 * 179.78446 * 18 17 16 37 37 H 1.09001 * 109.35603 * 256.91786 * 19 18 17 38 38 H 1.08996 * 109.35718 * 137.33607 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 3.5765 -1.8371 -3.2999 9 14 6.0922 -1.0615 -2.4364 10 1 6.5838 -0.2920 -1.2653 11 1 6.6855 -2.4227 -2.4193 12 1 6.4871 -0.3650 -3.6871 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 1 1.2586 0.9343 2.2934 16 6 3.4145 0.9756 2.3321 17 6 3.6089 1.7057 3.6299 18 6 2.9416 1.4566 4.7107 19 6 1.8755 0.4058 4.8173 20 6 1.9875 -0.5789 3.6514 21 1 2.8823 -1.1895 3.7722 22 6 0.7514 -1.4797 3.6128 23 9 0.8512 -2.3622 2.5318 24 9 0.6684 -2.2088 4.8039 25 9 -0.3954 -0.6918 3.4673 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.7517 -1.7715 -1.2055 30 1 1.6055 -0.2618 -2.1369 31 1 4.0609 -2.2439 -4.0352 32 1 2.9173 -1.1205 1.0288 33 1 4.2296 0.2651 2.1947 34 1 3.4170 1.6891 1.5080 35 1 4.3503 2.4903 3.6619 36 1 3.1658 2.0417 5.5904 37 1 0.8953 0.8821 4.7952 38 1 1.9920 -0.1329 5.7577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879671818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:54 Heat of formation + Delta-G solvation = -169.616694 kcal Electronic energy + Delta-G solvation = -23223.781675 eV Core-core repulsion = 19456.951461 eV Total energy + Delta-G solvation = -3766.830214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.82316 -48.38695 -48.17899 -40.19953 -37.37939 -34.72104 -32.99052 -32.32281 -29.33834 -28.80022 -26.47552 -25.14022 -23.75974 -22.29383 -21.14188 -19.63864 -19.02076 -18.54637 -18.50501 -18.35349 -16.78780 -16.61100 -16.02096 -15.50446 -15.35533 -15.10823 -14.94840 -14.73610 -14.55273 -14.45775 -14.35910 -14.24293 -14.08286 -13.56872 -13.48833 -13.34926 -13.17827 -12.80788 -12.72207 -12.60741 -12.38414 -12.24777 -11.93335 -11.76486 -11.49620 -11.19840 -10.95315 -10.56119 -9.91014 -9.12744 -8.16721 -6.26585 1.39846 1.40115 1.41349 1.52448 2.01708 2.41576 2.95980 3.08848 3.17695 3.23047 3.51460 3.93149 3.98201 4.00168 4.21548 4.26177 4.35309 4.42752 4.45790 4.61808 4.70447 4.78841 4.82151 4.94786 5.03836 5.09485 5.14797 5.23439 5.35888 5.52166 5.57906 5.71045 5.87441 6.01948 6.23328 6.38607 6.63951 6.89482 7.42178 8.95437 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.006060 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.186262 B = 4619.362035 C = 5240.710355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.103 3.897 3 H 0.032 0.968 4 C 0.028 3.972 5 C -0.526 4.526 6 H 0.065 0.935 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.959 3.041 10 H -0.258 1.258 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.677 5.677 14 C 0.093 3.907 15 H 0.084 0.916 16 C -0.115 4.115 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.085 4.085 20 C -0.117 4.117 21 H 0.116 0.884 22 C 0.460 3.540 23 F -0.174 7.174 24 F -0.195 7.195 25 F -0.192 7.192 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.052 0.948 29 H -0.006 1.006 30 H -0.008 1.008 31 H 0.261 0.739 32 H 0.348 0.652 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.245 6.137 18.320 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.006 4.006 3 H 0.050 0.950 4 C -0.009 4.009 5 C -0.564 4.564 6 H 0.083 0.917 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.784 3.216 10 H -0.182 1.182 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.309 5.309 14 C -0.018 4.018 15 H 0.102 0.898 16 C -0.153 4.153 17 C -0.174 4.174 18 C -0.165 4.165 19 C -0.122 4.122 20 C -0.137 4.137 21 H 0.134 0.866 22 C 0.406 3.594 23 F -0.155 7.155 24 F -0.176 7.176 25 F -0.173 7.173 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.012 0.988 30 H 0.011 0.989 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.152 0.848 37 H 0.107 0.893 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.881 5.763 18.311 19.412 hybrid contribution 1.386 0.063 -1.070 1.752 sum -1.495 5.826 17.242 18.261 Atomic orbital electron populations 1.21728 0.95203 1.01053 1.00650 1.21337 0.94403 0.95047 0.89851 0.95007 1.19120 0.95055 0.94574 0.92164 1.21570 0.93004 1.33668 1.08178 0.91698 1.25896 1.03155 0.94995 0.95502 1.70115 1.37419 1.36982 1.12842 0.85494 0.80074 0.77767 0.78257 1.18183 1.20902 1.21030 1.60774 1.34300 1.31433 1.04368 1.21607 0.97958 0.92966 0.89253 0.89790 1.21131 0.97376 0.99567 0.97243 1.22093 1.01057 1.00510 0.93784 1.22026 0.97001 0.98695 0.98739 1.20534 0.99971 0.94983 0.96709 1.22553 0.94972 0.97416 0.98786 0.86636 1.20531 0.85730 0.80206 0.72911 1.93261 1.96135 1.70416 1.55700 1.93132 1.96847 1.79656 1.47999 1.93106 1.54308 1.74369 1.95549 0.93791 0.92450 0.92943 0.98779 0.98920 0.93021 0.83160 0.90961 0.91374 0.86438 0.84804 0.89348 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 9.40 71.98 0.68 -3.96 16 2 C 0.10 4.14 2.41 44.92 0.11 4.25 16 3 H 0.03 1.28 7.27 -2.39 -0.02 1.26 16 4 C 0.03 1.45 4.57 29.85 0.14 1.59 16 5 C -0.53 -28.19 8.12 25.60 0.21 -27.99 16 6 H 0.06 3.26 7.49 -2.91 -0.02 3.23 16 7 C 0.00 0.13 5.46 84.66 0.46 0.59 16 8 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 9 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 10 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 N -0.68 -24.28 3.85 -468.74 -1.81 -26.08 16 14 C 0.09 2.60 1.64 45.06 0.07 2.67 16 15 H 0.08 2.39 7.00 -2.39 -0.02 2.37 16 16 C -0.11 -2.99 5.43 29.69 0.16 -2.83 16 17 C -0.16 -3.12 9.80 27.07 0.27 -2.86 16 18 C -0.15 -2.47 9.80 27.04 0.27 -2.20 16 19 C -0.08 -1.51 5.21 29.66 0.15 -1.35 16 20 C -0.12 -2.78 2.06 -10.65 -0.02 -2.81 16 21 H 0.12 2.66 8.13 -2.39 -0.02 2.64 16 22 C 0.46 12.75 2.67 71.98 0.19 12.94 16 23 F -0.17 -5.98 15.19 44.97 0.68 -5.30 16 24 F -0.19 -5.07 17.05 44.97 0.77 -4.30 16 25 F -0.19 -5.45 16.25 44.97 0.73 -4.71 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.82 7.43 -2.39 -0.02 1.81 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.35 13.72 6.80 -89.69 -0.61 13.11 16 33 H 0.07 2.01 7.91 -2.39 -0.02 1.99 16 34 H 0.07 1.96 7.64 -2.39 -0.02 1.94 16 35 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.13 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.09 1.55 7.50 -2.39 -0.02 1.53 16 38 H 0.10 1.47 8.12 -2.39 -0.02 1.45 16 Total: -1.00 -61.33 315.35 5.82 -55.52 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.45 Total: 17.59 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 2.68 Total: -21.95 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.52 Total: -82.08 kcal Atomic # 9 Polarization: -16.50 SS G_CDS: 2.18 Total: -14.31 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -61.33 5.82 -55.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879671818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.100 kcal (2) G-P(sol) polarization free energy of solvation -61.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds