Wall clock time and date at job start Mon Mar 30 2020 02:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38171 * 119.93609 * 2 1 4 4 C 1.38887 * 120.04140 * 179.97438 * 3 2 1 5 5 N 1.39920 * 120.03942 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00379 * 33.33250 * 5 4 3 7 7 O 1.21291 * 120.00154 * 5.27588 * 6 5 4 8 8 C 1.50704 * 120.00048 * 185.27330 * 6 5 4 9 9 C 1.52998 * 109.46968 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47248 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.47423 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00175 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00101 * 179.97438 * 11 10 9 14 14 N 1.31522 * 120.00037 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99918 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.47188 * 90.00524 * 15 13 11 17 17 H 1.48506 * 109.47060 * 210.00072 * 15 13 11 18 18 H 1.48499 * 109.47197 * 330.00168 * 15 13 11 19 19 C 1.38794 * 119.91589 * 359.77575 * 4 3 2 20 20 C 1.38590 * 119.87472 * 0.47843 * 19 4 3 21 21 O 1.35899 * 120.02153 * 179.77358 * 20 19 4 22 22 C 1.38166 * 119.94236 * 179.97438 * 2 1 3 23 23 C 1.50705 * 119.95587 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.47409 * 270.01742 * 1 2 3 25 25 H 1.09003 * 109.47669 * 30.02013 * 1 2 3 26 26 H 1.09004 * 109.46720 * 150.02170 * 1 2 3 27 27 H 1.08001 * 119.97691 * 0.02562 * 3 2 1 28 28 H 0.97009 * 119.99473 * 213.33680 * 5 4 3 29 29 H 1.08998 * 109.46985 * 300.00296 * 8 6 5 30 30 H 1.09000 * 109.47067 * 60.00340 * 8 6 5 31 31 H 1.09007 * 109.47571 * 300.00114 * 9 8 6 32 32 H 1.09002 * 109.47370 * 59.99753 * 9 8 6 33 33 H 1.08999 * 109.46984 * 299.99777 * 10 9 8 34 34 H 1.09002 * 109.47454 * 59.99415 * 10 9 8 35 35 H 0.96999 * 119.99862 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.06488 * 180.25418 * 19 4 3 37 37 H 0.96702 * 113.99491 * 269.72369 * 21 20 19 38 38 H 1.09004 * 109.46963 * 269.97661 * 23 22 2 39 39 H 1.08999 * 109.46991 * 29.97605 * 23 22 2 40 40 H 1.09000 * 109.46799 * 149.98066 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1974 0.0000 4 6 3.5853 1.1999 0.0005 5 7 4.2835 2.4125 0.0011 6 6 3.7746 3.4829 0.6424 7 8 2.7607 3.3712 1.2987 8 6 4.4652 4.8188 0.5443 9 6 3.6885 5.8555 1.3585 10 6 4.3892 7.2119 1.2583 11 6 3.6246 8.2328 2.0608 12 1 2.7282 7.9433 2.5891 13 6 4.0694 9.5365 2.1206 14 7 3.4023 10.4274 2.8214 15 14 5.6202 10.0371 1.2075 16 1 5.2651 10.4830 -0.1637 17 1 6.2847 11.1494 1.9331 18 1 6.5437 8.8769 1.1272 19 6 4.2798 -0.0018 0.0058 20 6 3.5847 -1.2008 0.0004 21 8 4.2616 -2.3792 0.0009 22 6 2.1966 -1.1972 0.0005 23 6 1.4407 -2.5011 0.0005 24 1 -0.3634 0.0003 1.0276 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6551 2.1319 0.0004 28 1 5.1340 2.4826 -0.4603 29 1 5.4784 4.7337 0.9370 30 1 4.5049 5.1314 -0.4992 31 1 2.6750 5.9407 0.9662 32 1 3.6490 5.5426 2.4019 33 1 5.4027 7.1270 1.6504 34 1 4.4284 7.5245 0.2148 35 1 3.7155 11.3445 2.8638 36 1 5.3597 -0.0026 0.0104 37 1 4.4575 -2.7205 -0.8824 38 1 1.2585 -2.8154 1.0282 39 1 0.4886 -2.3690 -0.5133 40 1 2.0286 -3.2617 -0.5132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882124288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:30 Heat of formation + Delta-G solvation = -75.452107 kcal Electronic energy + Delta-G solvation = -20529.062296 eV Core-core repulsion = 17308.172106 eV Total energy + Delta-G solvation = -3220.890191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78737 -39.43585 -37.11280 -35.38857 -34.35404 -32.40154 -31.89967 -31.10526 -28.65741 -27.42931 -26.24564 -23.86439 -22.45496 -21.30057 -20.43150 -19.92400 -18.33207 -17.38424 -16.66357 -16.52481 -16.15709 -15.72253 -15.22405 -14.92386 -14.32383 -14.08578 -13.73000 -13.57384 -13.34936 -13.11295 -12.94499 -12.66695 -12.52625 -12.13476 -12.00286 -11.77383 -11.65454 -11.62573 -11.03170 -10.82321 -10.81312 -10.17476 -10.02357 -9.88738 -9.72466 -9.50723 -9.16296 -8.74243 -8.52650 -8.11208 -6.02217 -4.00311 1.04285 1.09244 2.64343 2.97669 3.30192 3.37551 3.39988 3.47303 3.98139 4.45513 4.55434 4.72696 4.80582 4.95274 5.05093 5.09845 5.30856 5.31584 5.44053 5.44737 5.49361 5.51113 5.57512 5.62027 5.77395 5.80551 6.00516 6.11284 6.17714 6.30364 6.45471 6.50375 6.62927 6.77222 6.88193 7.29462 7.34652 7.41004 7.41893 7.80463 8.16966 8.57168 9.04327 9.59576 11.11454 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037722 B = 0.002906 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.092531 B = 9634.234536 C =10204.084273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.126 4.126 4 C 0.169 3.831 5 N -0.682 5.682 6 C 0.512 3.488 7 O -0.511 6.511 8 C -0.140 4.140 9 C -0.088 4.088 10 C -0.014 4.014 11 C -0.520 4.520 12 H 0.073 0.927 13 C 0.064 3.936 14 N -0.904 5.904 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.266 1.266 19 C -0.180 4.180 20 C 0.123 3.877 21 O -0.494 6.494 22 C -0.133 4.133 23 C -0.106 4.106 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.410 0.590 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.011 0.989 35 H 0.263 0.737 36 H 0.130 0.870 37 H 0.386 0.614 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 -26.094 -11.314 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.147 4.147 4 C 0.074 3.926 5 N -0.328 5.328 6 C 0.301 3.699 7 O -0.385 6.385 8 C -0.180 4.180 9 C -0.126 4.126 10 C -0.052 4.052 11 C -0.558 4.558 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.543 5.543 15 Si 0.709 3.291 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.191 1.191 19 C -0.201 4.201 20 C 0.078 3.922 21 O -0.304 6.304 22 C -0.134 4.134 23 C -0.163 4.163 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.157 0.843 28 H 0.246 0.754 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.148 0.852 37 H 0.242 0.758 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.271 -25.830 -10.158 27.757 hybrid contribution 1.502 0.426 -1.120 1.922 sum 1.774 -25.405 -11.278 27.852 Atomic orbital electron populations 1.20871 0.90683 1.02918 1.02853 1.19517 0.96227 0.91504 0.98100 1.21115 0.92520 0.98902 1.02125 1.17522 0.91373 0.85099 0.98579 1.43808 1.24974 1.09308 1.54752 1.21442 0.85191 0.85867 0.77387 1.90719 1.24567 1.84730 1.38449 1.21909 1.01155 0.91134 1.03792 1.21294 0.98758 0.93582 0.99002 1.19602 0.96247 0.92677 0.96624 1.21151 1.11529 0.92905 1.30186 0.90919 1.25057 0.96903 0.96563 0.95123 1.69925 1.39799 1.03252 1.41327 0.86758 0.84054 0.78304 0.79999 1.20341 1.21430 1.19051 1.21038 1.00258 0.90764 1.08009 1.17871 0.89061 0.84617 1.00644 1.84842 1.76467 1.35873 1.33205 1.19979 0.92845 0.95706 1.04914 1.20667 0.99493 0.93678 1.02424 0.90685 0.91221 0.91060 0.84284 0.75372 0.88989 0.88864 0.91970 0.91931 0.96617 0.97044 0.92763 0.85228 0.75803 0.91245 0.91325 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.60 36.00 0.35 -0.71 16 2 C -0.05 -0.60 5.87 -104.68 -0.61 -1.22 16 3 C -0.13 -1.69 8.31 -39.37 -0.33 -2.02 16 4 C 0.17 2.12 6.28 -83.72 -0.53 1.59 16 5 N -0.68 -7.93 5.34 -9.88 -0.05 -7.99 16 6 C 0.51 7.70 7.57 -10.99 -0.08 7.61 16 7 O -0.51 -9.68 13.67 5.55 0.08 -9.60 16 8 C -0.14 -2.06 5.70 -27.88 -0.16 -2.21 16 9 C -0.09 -1.78 4.44 -26.73 -0.12 -1.90 16 10 C -0.01 -0.33 4.04 -27.89 -0.11 -0.45 16 11 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 12 H 0.07 2.29 7.99 -52.48 -0.42 1.88 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 15 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 19 C -0.18 -1.96 9.90 -39.25 -0.39 -2.35 16 20 C 0.12 1.30 6.67 -39.24 -0.26 1.04 16 21 O -0.49 -4.33 12.54 -19.42 -0.24 -4.57 16 22 C -0.13 -1.40 5.90 -104.43 -0.62 -2.02 16 23 C -0.11 -0.83 9.38 36.01 0.34 -0.49 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.07 0.50 5.93 -51.93 -0.31 0.19 16 27 H 0.14 2.08 6.41 -52.49 -0.34 1.74 16 28 H 0.41 3.28 8.82 -40.82 -0.36 2.92 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 32 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 34 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.39 1.47 9.06 45.56 0.41 1.88 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.44 5.93 -51.93 -0.31 0.14 16 40 H 0.06 0.42 7.53 -51.93 -0.39 0.03 16 LS Contribution 332.18 15.07 5.01 5.01 Total: -1.00 -35.42 332.18 -7.08 -42.50 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.02 Total: 1.93 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.95 Total: -16.72 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.72 Total: -35.49 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.17 Total: -14.18 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.42 -7.08 -42.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882124288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.948 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds