Wall clock time and date at job start Mon Mar 30 2020 02:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38171 * 119.93609 * 2 1 4 4 C 1.38887 * 120.04140 * 179.97438 * 3 2 1 5 5 N 1.39920 * 120.03942 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00379 * 33.33250 * 5 4 3 7 7 O 1.21291 * 120.00154 * 5.27588 * 6 5 4 8 8 C 1.50704 * 120.00048 * 185.27330 * 6 5 4 9 9 C 1.52998 * 109.46968 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47248 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.47423 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00175 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00101 * 179.97438 * 11 10 9 14 14 N 1.31522 * 120.00037 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99918 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.47188 * 90.00524 * 15 13 11 17 17 H 1.48506 * 109.47060 * 210.00072 * 15 13 11 18 18 H 1.48499 * 109.47197 * 330.00168 * 15 13 11 19 19 C 1.38794 * 119.91589 * 359.77575 * 4 3 2 20 20 C 1.38590 * 119.87472 * 0.47843 * 19 4 3 21 21 O 1.35899 * 120.02153 * 179.77358 * 20 19 4 22 22 C 1.38166 * 119.94236 * 179.97438 * 2 1 3 23 23 C 1.50705 * 119.95587 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.47409 * 270.01742 * 1 2 3 25 25 H 1.09003 * 109.47669 * 30.02013 * 1 2 3 26 26 H 1.09004 * 109.46720 * 150.02170 * 1 2 3 27 27 H 1.08001 * 119.97691 * 0.02562 * 3 2 1 28 28 H 0.97009 * 119.99473 * 213.33680 * 5 4 3 29 29 H 1.08998 * 109.46985 * 300.00296 * 8 6 5 30 30 H 1.09000 * 109.47067 * 60.00340 * 8 6 5 31 31 H 1.09007 * 109.47571 * 300.00114 * 9 8 6 32 32 H 1.09002 * 109.47370 * 59.99753 * 9 8 6 33 33 H 1.08999 * 109.46984 * 299.99777 * 10 9 8 34 34 H 1.09002 * 109.47454 * 59.99415 * 10 9 8 35 35 H 0.96999 * 119.99862 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.06488 * 180.25418 * 19 4 3 37 37 H 0.96702 * 113.99491 * 269.72369 * 21 20 19 38 38 H 1.09004 * 109.46963 * 269.97661 * 23 22 2 39 39 H 1.08999 * 109.46991 * 29.97605 * 23 22 2 40 40 H 1.09000 * 109.46799 * 149.98066 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1974 0.0000 4 6 3.5853 1.1999 0.0005 5 7 4.2835 2.4125 0.0011 6 6 3.7746 3.4829 0.6424 7 8 2.7607 3.3712 1.2987 8 6 4.4652 4.8188 0.5443 9 6 3.6885 5.8555 1.3585 10 6 4.3892 7.2119 1.2583 11 6 3.6246 8.2328 2.0608 12 1 2.7282 7.9433 2.5891 13 6 4.0694 9.5365 2.1206 14 7 3.4023 10.4274 2.8214 15 14 5.6202 10.0371 1.2075 16 1 5.2651 10.4830 -0.1637 17 1 6.2847 11.1494 1.9331 18 1 6.5437 8.8769 1.1272 19 6 4.2798 -0.0018 0.0058 20 6 3.5847 -1.2008 0.0004 21 8 4.2616 -2.3792 0.0009 22 6 2.1966 -1.1972 0.0005 23 6 1.4407 -2.5011 0.0005 24 1 -0.3634 0.0003 1.0276 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6551 2.1319 0.0004 28 1 5.1340 2.4826 -0.4603 29 1 5.4784 4.7337 0.9370 30 1 4.5049 5.1314 -0.4992 31 1 2.6750 5.9407 0.9662 32 1 3.6490 5.5426 2.4019 33 1 5.4027 7.1270 1.6504 34 1 4.4284 7.5245 0.2148 35 1 3.7155 11.3445 2.8638 36 1 5.3597 -0.0026 0.0104 37 1 4.4575 -2.7205 -0.8824 38 1 1.2585 -2.8154 1.0282 39 1 0.4886 -2.3690 -0.5133 40 1 2.0286 -3.2617 -0.5132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882124288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:29 Heat of formation + Delta-G solvation = -101.067509 kcal Electronic energy + Delta-G solvation = -20530.173064 eV Core-core repulsion = 17308.172106 eV Total energy + Delta-G solvation = -3222.000958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.75313 -40.40937 -37.91964 -36.43893 -36.04765 -34.18842 -33.04738 -31.88229 -30.28313 -28.26035 -27.24149 -25.46579 -23.39071 -22.48199 -21.64470 -21.29659 -19.15424 -18.94726 -18.25434 -17.49119 -17.15274 -16.70863 -16.36358 -16.16335 -15.74604 -15.11684 -15.06596 -14.77542 -14.64765 -14.16400 -13.85300 -13.84699 -13.57274 -13.42717 -13.19254 -12.85631 -12.74718 -12.58559 -12.45880 -12.31128 -11.80110 -11.74044 -11.55967 -11.50126 -11.33650 -11.10756 -10.78696 -10.74877 -9.58602 -9.00237 -8.27720 -6.33519 0.16085 0.25404 1.38787 1.42418 1.54183 1.54364 1.99106 2.39202 2.62411 3.07515 3.27605 3.66385 3.86723 4.00718 4.08907 4.15338 4.23187 4.26501 4.31377 4.64509 4.69592 4.72410 4.80489 4.86653 4.89733 4.91308 4.94839 5.03076 5.07344 5.11241 5.23618 5.36483 5.47923 5.55957 5.59610 5.63331 5.68111 5.93287 6.30422 6.40133 6.75513 6.86061 7.11980 7.30914 8.90017 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037722 B = 0.002906 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.092531 B = 9634.234536 C =10204.084273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.153 4.153 4 C 0.151 3.849 5 N -0.662 5.662 6 C 0.513 3.487 7 O -0.562 6.562 8 C -0.127 4.127 9 C -0.082 4.082 10 C -0.009 4.009 11 C -0.540 4.540 12 H 0.019 0.981 13 C -0.004 4.004 14 N -0.958 5.958 15 Si 0.962 3.038 16 H -0.264 1.264 17 H -0.287 1.287 18 H -0.234 1.234 19 C -0.178 4.178 20 C 0.125 3.875 21 O -0.498 6.498 22 C -0.138 4.138 23 C -0.105 4.105 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.430 0.570 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.266 0.734 36 H 0.151 0.849 37 H 0.410 0.590 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 -28.275 -13.624 31.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.063 4.063 3 C -0.173 4.173 4 C 0.056 3.944 5 N -0.309 5.309 6 C 0.302 3.698 7 O -0.439 6.439 8 C -0.167 4.167 9 C -0.120 4.120 10 C -0.046 4.046 11 C -0.578 4.578 12 H 0.037 0.963 13 C -0.200 4.200 14 N -0.599 5.599 15 Si 0.784 3.216 16 H -0.189 1.189 17 H -0.214 1.214 18 H -0.157 1.157 19 C -0.199 4.199 20 C 0.080 3.920 21 O -0.311 6.311 22 C -0.139 4.139 23 C -0.162 4.162 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.113 0.887 27 H 0.131 0.869 28 H 0.269 0.731 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.169 0.831 37 H 0.269 0.731 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.167 -28.072 -12.517 30.899 hybrid contribution 0.506 0.997 -0.350 1.171 sum 3.673 -27.075 -12.867 30.201 Atomic orbital electron populations 1.20916 0.89469 1.03902 1.02992 1.19771 0.97353 0.91359 0.97864 1.21096 0.93347 0.98683 1.04212 1.17652 0.91236 0.85792 0.99716 1.43503 1.25357 1.08310 1.53764 1.21475 0.84502 0.86741 0.77032 1.90716 1.26802 1.85480 1.40923 1.21749 1.01254 0.89079 1.04591 1.21061 0.98305 0.94073 0.98596 1.19544 0.96175 0.92461 0.96470 1.21567 1.10646 0.94963 1.30664 0.96289 1.26216 1.01395 0.96278 0.96129 1.70113 1.42392 1.03912 1.43450 0.85487 0.78860 0.78752 0.78463 1.18882 1.21353 1.15707 1.21221 1.01282 0.90143 1.07275 1.17984 0.89249 0.85177 0.99616 1.84787 1.76099 1.34918 1.35340 1.20305 0.93295 0.96368 1.03922 1.20730 1.00134 0.92553 1.02740 0.90897 0.91659 0.88673 0.86905 0.73057 0.85910 0.85731 0.94333 0.94497 0.95018 0.95073 0.92519 0.83139 0.73050 0.91375 0.89949 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.60 71.23 0.68 -1.40 16 2 C -0.06 -1.42 5.87 -19.90 -0.12 -1.54 16 3 C -0.15 -4.21 8.31 22.41 0.19 -4.02 16 4 C 0.15 3.65 6.28 38.14 0.24 3.89 16 5 N -0.66 -14.37 5.34 -303.55 -1.62 -15.99 16 6 C 0.51 15.14 7.57 87.66 0.66 15.80 16 7 O -0.56 -22.22 13.67 -3.06 -0.04 -22.26 16 8 C -0.13 -3.45 5.70 29.85 0.17 -3.28 16 9 C -0.08 -3.34 4.44 30.59 0.14 -3.21 16 10 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 11 C -0.54 -32.37 9.66 25.60 0.25 -32.13 16 12 H 0.02 1.28 7.99 -2.91 -0.02 1.26 16 13 C 0.00 -0.26 5.47 84.65 0.46 0.20 16 14 N -0.96 -61.95 13.96 21.45 0.30 -61.65 16 15 Si 0.96 43.65 27.47 68.60 1.88 45.53 16 16 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.23 -9.38 6.54 99.48 0.65 -8.73 16 19 C -0.18 -3.52 9.90 22.49 0.22 -3.30 16 20 C 0.13 2.37 6.67 22.49 0.15 2.52 16 21 O -0.50 -7.16 12.54 -92.41 -1.16 -8.32 16 22 C -0.14 -2.67 5.90 -19.74 -0.12 -2.79 16 23 C -0.11 -1.39 9.38 71.24 0.67 -0.72 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 26 H 0.09 1.19 5.93 -2.39 -0.01 1.17 16 27 H 0.11 3.65 6.41 -2.91 -0.02 3.63 16 28 H 0.43 5.59 8.82 -92.70 -0.82 4.77 16 29 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.04 1.71 8.10 -2.38 -0.02 1.69 16 32 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 33 H 0.03 1.36 7.20 -2.39 -0.02 1.35 16 34 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 35 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 36 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.41 1.64 9.06 -74.06 -0.67 0.97 16 38 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.08 0.85 5.93 -2.39 -0.01 0.83 16 40 H 0.08 0.80 7.53 -2.39 -0.02 0.78 16 Total: -1.00 -81.77 332.18 2.60 -79.17 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.48 Total: 13.79 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 3.72 Total: -30.27 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.32 Total: -77.64 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.20 Total: -30.58 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Total: -81.77 2.60 -79.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882124288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.896 kcal (2) G-P(sol) polarization free energy of solvation -81.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds